For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MTSGSAPQWLTRNLRVLSLVSLLQDAASELLYPLLPIYLTTVLGAPPSVVGAVEGAAEGAASLTKVVSGP LGDRFARRPLIASGYGMAALGKLIVAAAGAWPGVLAGRVVDRLGKGLRGAPRDALLVDGVEPAQRGRAFG FHRTMDTLGAVIGPLLGLAGYELFDHQIGPVLYLAVIPAVLSVLLITWVREPPRNLAKAKPASILDGTRR LSRRYWAVVSFLVLFSIANFPDALLLLRLKQIGFSVVGVIMAYVGYNAVYALASFPAGALADRLGRPVVY AFGLVFFAVGYLGLGITTDTATAWALIAAYGLFTACYDGVGKAWISAIVSAELQSSAQGVFQGLSGFAVL AAGLWAGFLWGVDGRLPLLISGGAGAVFALALLAAAAGTRRRAR
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. marinum M | MMAR_0136 | - | - | 100% (394) | intergral membrane protein |
M. marinum M | MMAR_5094 | - | 4e-11 | 23.98% (392) | integral membrane transport protein |
M. marinum M | MMAR_4767 | - | 2e-07 | 28.78% (205) | integral membrane transport protein |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2288 | - | 1e-22 | 26.04% (361) | integral membrane protein |
M. gilvum PYR-GCK | Mflv_1475 | - | 1e-09 | 26.06% (307) | major facilitator transporter |
M. tuberculosis H37Rv | Rv2265 | - | 1e-22 | 26.04% (361) | integral membrane protein |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_4615 | - | 1e-24 | 26.45% (397) | major facilitator transporter |
M. avium 104 | MAV_1539 | - | 6e-13 | 26.74% (359) | major facilitator family protein transporter |
M. smegmatis MC2 155 | MSMEG_2380 | - | 5e-07 | 24.61% (321) | sugar transporter family protein |
M. thermoresistible (build 8) | TH_0476 | - | 2e-09 | 23.75% (341) | major facilitator superfamily protein MFS_1 |
M. ulcerans Agy99 | MUL_4961 | - | 0.0 | 97.97% (394) | intergral membrane protein |
M. vanbaalenii PYR-1 | Mvan_2778 | - | 1e-30 | 29.72% (397) | major facilitator superfamily transporter |
CLUSTAL 2.0.9 multiple sequence alignment MMAR_0136|M.marinum_M -------------MTSGSAPQWLTRNLRVLSLVSLLQDAASELLYP---L MUL_4961|M.ulcerans_Agy99 -------------MTSGSAPQWLTRNLRVLSLVSLLQDAASELLYP---L Mb2288|M.bovis_AF2122/97 --MGANGDVALSRIGATRPALSAWRFVTVFGVVGLLADVVYEGARS---I Rv2265|M.tuberculosis_H37Rv --MGANGDVALSRIGATRPALSAWRFVTVFGVVGLLADVVYEGARS---I MAB_4615|M.abscessus_ATCC_1997 ----------------MPQRLSAWRFVTTFGVISMLADIVYEGARS---I Mvan_2778|M.vanbaalenii_PYR-1 ------------MTGTPGVGLSAWRFVTTFGVVSLLADIVYEGARS---I Mflv_1475|M.gilvum_PYR-GCK -----------------MAPLSPTAQRAPLLAAGFTTAFGAHAVAG---T TH_0476|M.thermoresistible__bu ----------------------VRRFAFPLLAYAFAAVMVGTTVPT---P MAV_1539|M.avium_104 -------MVMPNGPVAHQAGTRGYRRMTAALCGAGLASFAAMYCTQ---A MSMEG_2380|M.smegmatis_MC2_155 MELRFDILRSRDSMERMAAPVIGTLRRWSMLVIALTSTMCANVFINGAAF . MMAR_0136|M.marinum_M LPIYLTTVLGAPPSVVGAVEGAAEGAASLTKVVSGPLGDRFAR-RPLIAS MUL_4961|M.ulcerans_Agy99 LPIYLATVLGAPPSVVGAVEGAAEGAASLTKIVSGPLGDRFAR-RPLIAS Mb2288|M.bovis_AF2122/97 TGPLLAS-LGATGLVVGVVTGVGEAAALGLRLVSGPLADRSRRFWAWTIA Rv2265|M.tuberculosis_H37Rv TGPLLAS-LGATGLVVGVVTGVGEAAALGLRLVSGPLADRSRRFWAWTIA MAB_4615|M.abscessus_ATCC_1997 TGPLLAS-LGASALVVGVVTGIGEAAALALRLVSGPLTDRTRKFWAWTIS Mvan_2778|M.vanbaalenii_PYR-1 TGPLLAS-LGATAVVVGVVTGVGEAAALILRMVSGPLADRTGRFWTWTIG Mflv_1475|M.gilvum_PYR-GCK LGTTTTG-TAASLLTLGAMLAIYDGAEVILKPLFGTLADRIGA-RTVLIA TH_0476|M.thermoresistible__bu MYAVYAERLGFGVLTTTVVFAGYTAGVLFALVVFGRWSDALGR-RPMLLA MAV_1539|M.avium_104 LLPALSAHHRIGPATAALTVSLTTGALALSIIPASVLSERYGRTRVMLIS MSMEG_2380|M.smegmatis_MC2_155 LIPTLHAERGLDLARSGLLSSMPSFGMVTTLIAWGYVVDRFGE-RLVLGL . . . : MMAR_0136|M.marinum_M GYGMAALGKLIVAAAGAWPGVLAGRVVDRLGKGLRGAPRDALLVDGVEPA MUL_4961|M.ulcerans_Agy99 GYGMAALGKLIVAAAGAWPGVLAGRVVDRLGKGLRGAPRDALLVDGVDPA Mb2288|M.bovis_AF2122/97 GYTLTVVTVPLLGIAGALWVACALVIAERVGKAVRGPAKDTLLSHAASVT Rv2265|M.tuberculosis_H37Rv GYTLTVVTVPLLGIAGALWVACALVIAERVGKAVRGPAKDTLLSHAASVT MAB_4615|M.abscessus_ATCC_1997 GYALTVVTVPFLGVSSVLWIAATLVIAERVGKAVRSPAKDTLLSHATAVT Mvan_2778|M.vanbaalenii_PYR-1 GYFLTVVTVPFLGAVGVLWAAAALIIAERVGKAVRSPAKDTLLSHATAVT Mflv_1475|M.gilvum_PYR-GCK GLAVFAVASLSFAVADETAWLWAARLGQGIGAAAFSPAASALVARLAPAS TH_0476|M.thermoresistible__bu GVGCAIVSALVFLIAGSVPQLIAARFVSGMSAGIFTGTATAAVIEAAPER MAV_1539|M.avium_104 GVASSVIG-LLLPFSPSLGVLVFGRAVQGVALAGIPAVAMALLAEEVDAS MSMEG_2380|M.smegmatis_MC2_155 GSALTAAAALAAASVQSLFAVGLFLLLGGMAAASSNSASGRLVVGWFPPE * :. . : MMAR_0136|M.marinum_M QRGRAFGFHRTMDTLGAVIGPLLGLAGYELFDHQIGPVLYLAVIPAVLSV MUL_4961|M.ulcerans_Agy99 QRGRAFGFHRTMDTLGAVIGPLLGLAGYELFDHQIGPVLYLAVIPAMLSV Mb2288|M.bovis_AF2122/97 GRGRGFAVHEALDQVGAMIGPLTVAGMLAITGNAYAPALGVLTLPGGAAL Rv2265|M.tuberculosis_H37Rv GRGRGFAVHEALDQVGAMIGPLTVAGMLAITGNAYAPALGVLTLPGGAAL MAB_4615|M.abscessus_ATCC_1997 GRGKGFAVHEAMDQIGAITGPLLVAGMLALTHVNYLPTFAILALPGGATL Mvan_2778|M.vanbaalenii_PYR-1 GRGRGFAVHEAMDQIGAVAGPLAVAAMLVVFGGDYAPTLALLAVPGVGVL Mflv_1475|M.gilvum_PYR-GCK GQGRAFGTYGSYKSVGYTLGPLIGGAIVTFGG-----LQALFAVMAALAA TH_0476|M.thermoresistible__bu RRSRAAAVATVANIGGLGAGPLLAGILVQYAPWPLHLTFWVHIVLMVLAA MAV_1539|M.avium_104 SLGSAMGRYIAGTTIGGLAGRIVPSVVVQVGTWRVALLACSLITLAGTAV MSMEG_2380|M.smegmatis_MC2_155 QRGLVMGIRQTATPLGVGLGALVIPRLAESHGVSAALLFPAVVCGIAAVV . . * * : MMAR_0136|M.marinum_M LLITWVR----EPPRN----LAKAKPASILDGTRRLSRRYWAVVSFLVLF MUL_4961|M.ulcerans_Agy99 LLIAWVR----EPPRN----LAKAKPASILDGTRRLPRRYWAVVSFLVLF Mb2288|M.bovis_AF2122/97 ALLLWLQRRVPRPESY--EDCPVVLGNPSAPRPWALPAQFWLYCGFTAIT Rv2265|M.tuberculosis_H37Rv ALLLWLQRRVPRPESY--EDCPVVLGNPSAPRPWALPAQFWLYCGFTAIT MAB_4615|M.abscessus_ATCC_1997 LLLFWLRRRVPHPERY--EHDDYIRGAADRPHKLSLPLSFWLYSGFTAIT Mvan_2778|M.vanbaalenii_PYR-1 ALLAWLRVRVPEPARYEVEAAPSTKPVARVSFLRSLPRSFWTYAGFSAAT Mflv_1475|M.gilvum_PYR-GCK AVAVWAAVAVPRLAVLP-RTRQTLLDTVRRFSESSFVTPTLALAAATAAL TH_0476|M.thermoresistible__bu AAIAVAPETSPRTGRLG-------VQRLSLPPQVRKVFAIASLAAFAGFA MAV_1539|M.avium_104 FAVLVPRSRFFTPKPAS-------VRAALRNLAGHLRNPVLAKLFAVGFV MSMEG_2380|M.smegmatis_MC2_155 SAVFVLDPPRPPRAEAP---------AEHLANPYRGSSVLWRIHAVSVLL MMAR_0136|M.marinum_M SIA--NFPDALLLLRLKQIG-FSVVGVIMAYVGYNAVYALASFPAGALAD MUL_4961|M.ulcerans_Agy99 SIA--NFPDALLLLRLKQIG-FSVVGVIMAYVGYNAVYALASFPVGALAD Mb2288|M.bovis_AF2122/97 MLG--FGTFGLLSFHMVSHGVLAAAMVPVVYAAAMAADALTALASGFSYD Rv2265|M.tuberculosis_H37Rv MLG--FGTFGLLSFHMVSHGVLAAAMVPVVYAAAMAADALTALASGFSYD MAB_4615|M.abscessus_ATCC_1997 MIG--FATFGVLSFHMVQRGVLPVPAVPIVYAAAMAADAVAALLSGWAYD Mvan_2778|M.vanbaalenii_PYR-1 MLG--FTTFGVLSFHQVERGVVHVAVVPVIYAAAMVADALAALATGWVYD Mflv_1475|M.gilvum_PYR-GCK SAG--VGFLPVLGTDFGLSPVVTGAVVSVLALTTAVVQPLAGRAADSGRI TH_0476|M.thermoresistible__bu VTG--LFTAVAPSFLAEVIGVRNHAVAGAVAASIFAASAVTQVLGASVSP MAV_1539|M.avium_104 LMGGFVTVYNYLGYRLAARPFGLAPSVVGLLFLLYLVGTGTSVVAGRLAD MSMEG_2380|M.smegmatis_MC2_155 VVPQGVLWTFALVWLITDRG-WSAASAGILVTVTQLLGAGGRIAAGKWSD . . MMAR_0136|M.marinum_M RLGR---PVVYAFGLVFFAVGYLGLGITTDTATAWALIAAYGLFTACYDG MUL_4961|M.ulcerans_Agy99 RLGR---PVVYAFGLVLFAVGYLGLGITTDTATAWALIAAYGLFTACYDG Mb2288|M.bovis_AF2122/97 RYGA---KTLAVLPILSILVVLFAF--TDNVTMVVIGTLVWGAAVGIQES Rv2265|M.tuberculosis_H37Rv RYGA---KTLAVLPILSILVVLFAF--TDNVTMVVIGTLVWGAAVGIQES MAB_4615|M.abscessus_ATCC_1997 RVGP---KSLAALPIVGATVPMLAF--TDSLPGIVLGALLWGAAVGIQES Mvan_2778|M.vanbaalenii_PYR-1 KVGA---VVLGALPVMAGLVPALAF--NDHLVPVVAGALVWGAAVGIQES Mflv_1475|M.gilvum_PYR-GCK SLTS---GLFTGVVVTAAGVAAAALP---GLVGLLGGAVVIGVGCGLITP TH_0476|M.thermoresistible__bu RRAV---AVGCALLIVGMVFLAAALV-WSSLPALIATAVVAGAGQGLSFS MAV_1539|M.avium_104 RRGR---PLVLGAALP-IAVAGLLLTVPPSLAAIVAGVGVFTGGFFAAHT MSMEG_2380|M.smegmatis_MC2_155 VIGYRLRPIRTIALAAAVTMAALALTDWLSSPVSIALMVAASVITVSDNG . : MMAR_0136|M.marinum_M VGKAWISAIVSAELQ---SSAQGVFQGLSGFAVLAAGLWAGFLWGVDGRL MUL_4961|M.ulcerans_Agy99 VGKAWISAIVSAELQ---SSAQGVFQGLSGFAVLAAGLWAGFLWGVDGRL Mb2288|M.bovis_AF2122/97 TLRGVVADLVASPRR---ASAYGVFAAGLGAATAGGGALIGWLYDIS--I Rv2265|M.tuberculosis_H37Rv TLRGVVADLVASPRR---ASAYGVFAAGLGAATAGGGALIGWLYDIS--I MAB_4615|M.abscessus_ATCC_1997 TLRAVVADLVPPPRR---ATAYGVYAAVLGTATAIGGALTGYLYGVS--I Mvan_2778|M.vanbaalenii_PYR-1 TLRAVVADLVEPARR---ATAYGIYAAVLGCAAAAGGALTGYLYGQS--V Mflv_1475|M.gilvum_PYR-GCK LAFTMLARSTPEERL---GQTMGAAEIGRECGDAAGPLVVAAIAAAS-TV TH_0476|M.thermoresistible__bu RGLAAVSARTPSDQRGEVSSTYFVVAYVALLVPVIGEGWAAHHWGLR-TA MAV_1539|M.avium_104 VASGWVGAVAQRDRA----EASALYLFSYYLGGSVAGAFGGVLYGVGGWS MSMEG_2380|M.smegmatis_MC2_155 LAFTGIAEIAGPFWS---GRALGTQNTSQHLATAVSSPVFGGLIGVAG-Y :. . : . . MMAR_0136|M.marinum_M PLLISGGAGAVFALALLAAAAGTRRRAR------------ MUL_4961|M.ulcerans_Agy99 PLLISGGAGAVFALALLAAAAGTRRRAR------------ Mb2288|M.bovis_AF2122/97 GTLVVVVIALELMALVMMFAIRLPRVAPS----------- Rv2265|M.tuberculosis_H37Rv GTLVVVVIALELMALVMMFAIRLPRVAPS----------- MAB_4615|M.abscessus_ATCC_1997 PMLIAVVGVIQLVALITAAPTLLRHAGQV----------- Mvan_2778|M.vanbaalenii_PYR-1 PLLVGVVIGVQAIALAVLPVVR--RVAR------------ Mflv_1475|M.gilvum_PYR-GCK PFGFLGLAAVVAASGVGVRRGRGRVGGVG----------- TH_0476|M.thermoresistible__bu GISFAVGVAVLAIGCLIAILIQESRDPQAI---------- MAV_1539|M.avium_104 ATVCFVVVLLMAGAALVALLVRDNGFRIGRRVVAGVASVK MSMEG_2380|M.smegmatis_MC2_155 PVAFAVCALLPALAIPLVPVEPARES--------------