For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_4382 | - | - | 100% (480) | amino acid permease-associated region |
| M. thermoresistible (build 8) | TH_0471 | - | 3e-28 | 23.73% (472) | POSSIBLE CATIONIC AMINO ACID TRANSPORT INTEGRAL MEMBRANE |
| M. thermoresistible (build 8) | TH_3126 | - | 1e-12 | 28.57% (259) | PUTATIVE putative amino acid permease-associated region |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2022c | - | 2e-30 | 27.65% (452) | integral membrane protein |
| M. gilvum PYR-GCK | Mflv_1611 | - | 0.0 | 74.32% (479) | amino acid permease-associated region |
| M. tuberculosis H37Rv | Rv1999c | - | 2e-30 | 27.65% (452) | integral membrane protein |
| M. leprae Br4923 | MLBr_01974 | - | 1e-19 | 24.20% (467) | putative permease |
| M. abscessus ATCC 19977 | MAB_2598 | - | 2e-31 | 28.28% (442) | hypothetical protein MAB_2598 |
| M. marinum M | MMAR_2407 | rocE_1 | 2e-32 | 25.28% (447) | cationic amino acid transport integral membrane protein, |
| M. avium 104 | MAV_2087 | - | 7e-28 | 26.92% (442) | amino acid transporter |
| M. smegmatis MC2 155 | MSMEG_5848 | - | 0.0 | 77.20% (478) | amino acid permease-associated region |
| M. ulcerans Agy99 | MUL_1244 | rocE | 7e-29 | 25.93% (455) | cationic amino acid transport integral membrane protein RocE |
| M. vanbaalenii PYR-1 | Mvan_5147 | - | 0.0 | 75.32% (474) | amino acid permease-associated region |
CLUSTAL 2.0.9 multiple sequence alignment
Mb2022c|M.bovis_AF2122/97 --------------------------------------------------
Rv1999c|M.tuberculosis_H37Rv --------------------------------------------------
MAB_2598|M.abscessus_ATCC_1997 --------------------------------------------------
MAV_2087|M.avium_104 --------------------------------------------------
MUL_1244|M.ulcerans_Agy99 --------------------------------------------------
MMAR_2407|M.marinum_M --------------------------------------------------
Mflv_1611|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_5147|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_5848|M.smegmatis_MC2_155 --------------------------------------------------
TH_4382|M.thermoresistible__bu --------------------------------------------------
MLBr_01974|M.leprae_Br4923 MFLSADVSCIEIVDINCSELRNDRRIPPQLALFCTNAANKAESAVTSHGQ
Mb2022c|M.bovis_AF2122/97 --------------------------------------------MRRPLD
Rv1999c|M.tuberculosis_H37Rv --------------------------------------------MRRPLD
MAB_2598|M.abscessus_ATCC_1997 --------------------------------------------MSSQQ-
MAV_2087|M.avium_104 -------------------------------------------------M
MUL_1244|M.ulcerans_Agy99 ---------------------------MPATSIRLREQMLRRRPAGGAPV
MMAR_2407|M.marinum_M ---------------------------MAAPTIGLIQQMLRRRPVIGAPV
Mflv_1611|M.gilvum_PYR-GCK -----------------------------------------MSEHTTGTG
Mvan_5147|M.vanbaalenii_PYR-1 -----------------------------------------MSESVAGPR
MSMEG_5848|M.smegmatis_MC2_155 ---------------------------------------------MTNPE
TH_4382|M.thermoresistible__bu ---------------------------------------------MSGTR
MLBr_01974|M.leprae_Br4923 LPIMANRRWAPHTRRQSGRATSTCSSLMRFSASESRAHSRFECYTLVRWS
Mb2022c|M.bovis_AF2122/97 PRDIPDELRRRLGLLDAVVIGLGSMIGAGIFAALAPAAYAAGSGLLLGLA
Rv1999c|M.tuberculosis_H37Rv PRDIPDELRRRLGLLDAVVIGLGSMIGAGIFAALAPAAYAAGSGLLLGLA
MAB_2598|M.abscessus_ATCC_1997 ----PGALRRELGTFDAVMIGLGSMIGAGIFAALAPAARSAGSALLIGLC
MAV_2087|M.avium_104 APGTADHLRRGIGTFQLTMFGVGSTIGTGIFFVMSQAVPEAGPAVIVSFL
MUL_1244|M.ulcerans_Agy99 AEGAAGSLKRSFGTFELTMFGVGSTVGTGIFFVLAEAVPEAGPAVIVSFI
MMAR_2407|M.marinum_M AHGASDQLKRSIGTFQLTLFGVGATVGTGIFFVLSEAVPEAGPGVVASFV
Mflv_1611|M.gilvum_PYR-GCK TTEKQPELRRVMGPGLLLLFVVGDILGTGVYALVGDVAGEVGGAAWLPFL
Mvan_5147|M.vanbaalenii_PYR-1 SPEKQPELKRVMGPGLLLLFVVGDILGTGVYALVGDVAGEVGGAAWLPFL
MSMEG_5848|M.smegmatis_MC2_155 MVEEQPQLRRVMGPGLLLLFVVGDILGTGVYALTGQVAKEVGGAAWLPFL
TH_4382|M.thermoresistible__bu TEQAQPELRRVLGPGLLLLFIVGDILGTGIYALVGDVAGEVGGAAWLPFL
MLBr_01974|M.leprae_Br4923 IRGQGGRAISKLGFWSVVMLGINSIIGAGIFMTPGEVIKIAGPFAPIAYT
:* :: :. :*:*:: . . .*
Mb2022c|M.bovis_AF2122/97 VAAVVAYCNAISSARLAARYPASGGTYVYGRMRLG------DFWGYLAGW
Rv1999c|M.tuberculosis_H37Rv VAAVVAYCNAISSARLAARYPASGGTYVYGRMRLG------DFWGYLAGW
MAB_2598|M.abscessus_ATCC_1997 VAAVIAYCNATSSARLAAVYPASGGTYVYGRERLG------DFWGYLAGW
MAV_2087|M.avium_104 LAGVAAGLAAVCYAELASAVPVSGSSYSYAYTTLG------EVVAMGVAA
MUL_1244|M.ulcerans_Agy99 IAGVAAGLAAICCAELASAVPVSGSSYSYAYATLG------EAVAMGVAS
MMAR_2407|M.marinum_M IAGIAAGLAAVCYAELASAVPVSGSTYSYAYTTLG------ELVAMGVAA
Mflv_1611|M.gilvum_PYR-GCK VAFAIATITAFSYLELVTKYPQAAGAALYAHKAFGI-----HFITFLVAF
Mvan_5147|M.vanbaalenii_PYR-1 VAFAIATVTAFSYLELVTKYPQAAGAALYAHKAFGI-----HFITFLVAF
MSMEG_5848|M.smegmatis_MC2_155 VAFLVATVTAFSYLELVTKYPQAAGAALYAHKAFGI-----HFVTFLVAF
TH_4382|M.thermoresistible__bu IAFLIATVTAFSYLELVTKYPQAAGAALYVHKAFGI-----QFVTFLVAF
MLBr_01974|M.leprae_Br4923 LAGIFAAVLAIVFATAAKYVKTNGSSYAYTTAAFGHRIGIYVGVTHAITA
:* * * . ..: * :*
Mb2022c|M.bovis_AF2122/97 GFVVGKTASCAAMALTVGFYVWPAQAHAVAVAVVVALTAVNY--------
Rv1999c|M.tuberculosis_H37Rv GFVVGKTASCAAMALTVGFYVWPAQAHAVAVAVVVALTAVNY--------
MAB_2598|M.abscessus_ATCC_1997 GFVVGKTASCAAMALTIGFYAWPGHAHAVAVASVVALTAINY--------
MAV_2087|M.avium_104 CLLLEYGVATAAVSVNWSGYLNKLLSNVVGFQLPHALSAAPW-DAQPG--
MUL_1244|M.ulcerans_Agy99 CLLLEYGVATAAVAVGLSGYVNKLLHNVFGFQLPQALSEAPW-DERPGEA
MMAR_2407|M.marinum_M CLLLEYGVSTAAVAVGWSQYVNKLLDNFFGHHLPQALSAAPWGDASPG--
Mflv_1611|M.gilvum_PYR-GCK VVMCSGITSASTASRAFAANFFTGVGVEDAPKAGVLILALVFMAALAAIN
Mvan_5147|M.vanbaalenii_PYR-1 VVMCSGITSAATASRAFAANFFEGAGID-ASKLGVVVLALLFMAALAAVN
MSMEG_5848|M.smegmatis_MC2_155 IVMCSGITSASTASRFFAANFFTGLHLD-WGKAGVVVLALLFMALIAAVN
TH_4382|M.thermoresistible__bu IVMCSGITSASTASRFFAANLEVGLGQE-WGRLGVAGVALLFMALLAMVN
MLBr_01974|M.leprae_Br4923 SIAWGVLASSFVSTLLRVAFPEKIWADNDELISVKTLTFLVFIAVLLAIN
. .: . : :
Mb2022c|M.bovis_AF2122/97 --------------------AGIQKSAWLTRSIVAVVLVVLTAVVVAAYG
Rv1999c|M.tuberculosis_H37Rv --------------------AGIQKSAWLTRSIVAVVLVVLTAVVVAAYG
MAB_2598|M.abscessus_ATCC_1997 --------------------VGVQKSAWLTRVIVAIVLSVLAAIVATAAG
MAV_2087|M.avium_104 --YVNLPAVMLIGMCALLLIRGASESAKVNAIMVMVKLGVLVVFGILAFT
MUL_1244|M.ulcerans_Agy99 AGYLNLPAIILIGLCALLLIRGVSESAKVNAIMVLIKLGVLGMFVILALT
MMAR_2407|M.marinum_M --IINLPAVVLVGLCAVLLIRGASESAKVNTIMVLIKLSVLVMFAVIALT
Mflv_1611|M.gilvum_PYR-GCK -------------------FRGVGESVKLNVILTIVEITGLVLVILVGLW
Mvan_5147|M.vanbaalenii_PYR-1 -------------------YRGVGESVRLNVVLTIVEITGLVVVVLVGLW
MSMEG_5848|M.smegmatis_MC2_155 -------------------FRGVSESVKLNVFLTFIEITGLALVILVGLW
TH_4382|M.thermoresistible__bu -------------------LRGVGESVRLNVLLTIVEISGLLLVIFVGLW
MLBr_01974|M.leprae_Br4923 ----------IFGNLVIRWANGISALGKIFALSVFIAGGLWTIITQHVNN
* : . : .
Mb2022c|M.bovis_AF2122/97 SGAADPARLDIGVDAHVWG---------MLQAAGLLFFAFAGYARIATLG
Rv1999c|M.tuberculosis_H37Rv SGAADPARLDIGVDAHVWG---------MLQAAGLLFFAFAGYARIATLG
MAB_2598|M.abscessus_ATCC_1997 SGSVDIAALDL-TGTSWRG---------VLQAAGLLFFAFAGYARIATLG
MAV_2087|M.avium_104 --AFDMHHLDDFAPFGVAG---------VGTAAGTIFFSYIGLDAVSTAG
MUL_1244|M.ulcerans_Agy99 --AYDTNHLKDFAPFGVAG---------VGAAAGTIFFSFIGLDAVSTAG
MMAR_2407|M.marinum_M --AFDADRFAEFAPFGVAG---------IGAAAGTIFFSYIGLDAVSTAG
Mflv_1611|M.gilvum_PYR-GCK AFTGG-GEVDFSRVVAFETAEDKNTFLAITAATSLAFFAMVGFEDSVNMA
Mvan_5147|M.vanbaalenii_PYR-1 AFTGG-ADVDFSRITAFETGEDKNTFLAVTAATSLAFFAMVGFEDSVNMA
MSMEG_5848|M.smegmatis_MC2_155 AFTGGSADIDFSRVVAFDTPSDKGVFLAVSTATSLAFFAMVGFEDSVNMA
TH_4382|M.thermoresistible__bu AFTGGGADVDFTRVVAFETTTDKSVFLAVSAATSLAFFAMVGFEDSVNMA
MLBr_01974|M.leprae_Br4923 YVTSRSAYQPTTYSLLGVTEIGKSTAASMTLATIVALYAFTGFESIANAA
: : *: ::: * . .
Mb2022c|M.bovis_AF2122/97 EEVRDPARTIPRAIPLALGITLAVYALVAVAVIAVLGPQRLARAAAPLSE
Rv1999c|M.tuberculosis_H37Rv EEVRDPARTIPRAIPLALGITLAVYALVAVAVIAVLGPQRLARAAAPLSE
MAB_2598|M.abscessus_ATCC_1997 EEVRDPARTIPRAIPIALGIALVVYVVVALAVLITLGPSRLASSAAPLLD
MAV_2087|M.avium_104 DEVTNPQKTMPRALIAALLTVTGVYVFVALAALGTQPWQDFGGQQEAGLA
MUL_1244|M.ulcerans_Agy99 EEVRNPQQSVPRALIAALFVVTGVYVLVAFAALGTQPWQMFAGQEEAGLA
MMAR_2407|M.marinum_M DEVKNPQKTMPLAIMAALVTVTTVYVVVTVAALGAQPWRDFEGQQ-AGLA
Mflv_1611|M.gilvum_PYR-GCK EETKDPVRTFPKILLSGLSIAGVVYILVSIVAVALVPVGKLEESDTPLVE
Mvan_5147|M.vanbaalenii_PYR-1 EETKDPVNTFPKILLSGLSIAGVVYVLISIVAVALVPVGRLEESDTPLVE
MSMEG_5848|M.smegmatis_MC2_155 EETKDPVRIFPKMLLTGLGIAGLVYVVVSIVAVALVPVGVLAGSETPLVE
TH_4382|M.thermoresistible__bu EETRDPVVIFPRALLTGLGIAGAVYVVVAIVAVALVPVGTLQASDVPLVE
MLBr_01974|M.leprae_Br4923 EEMNTPDRTLPKAIPLTILTVGVIYILALVVAMLLGSDKIVATNHTVKLA
:* * .* : : . :* . ...: .
Mb2022c|M.bovis_AF2122/97 AMRVAGVN--WLIPVVQIGAAVAALGSLLALILGVSRTTLAMARDRHLPR
Rv1999c|M.tuberculosis_H37Rv AMRVAGVN--WLIPVVQIGAAVAALGSLLALILGVSRTTLAMARDRHLPR
MAB_2598|M.abscessus_ATCC_1997 AVTAAGAG--WMEPVVRIGAVVAATGSLLALILGVSRTTFAMARDRHLPH
MAV_2087|M.avium_104 TILDHVTHGSWASTILAAGAVISIFSVTLVTMYGITRILFAMGRDGLLPP
MUL_1244|M.ulcerans_Agy99 TILDNVTHSAWASTVLAMGAVISIFTVTLVTMYGQTRILFAMGRDGLLPA
MMAR_2407|M.marinum_M TVLDRVVSGHYWGSVLAAGAVISIFSVTLVVLYGQTRILFAMGRDGLLPP
Mflv_1611|M.gilvum_PYR-GCK VVRAGAPG-LPIDTILPFMTMFAVSNTALINMLMASRLIYGMARQHVLPP
Mvan_5147|M.vanbaalenii_PYR-1 VVRAGAPG-LPIDAILPFMTMFAVSNTALINMLMASRLIYGMARQHVLPP
MSMEG_5848|M.smegmatis_MC2_155 VVKAGAPG-LPIETILPFISMFAVSNTALINMLMASRLIYGMARQRVLPP
TH_4382|M.thermoresistible__bu VVKAGAPG-LPIEELLPWISMFAVSNTALINMLMASRLIYGMARQRVLPP
MLBr_01974|M.leprae_Br4923 AAVGNNTF----RTIIVVGALVSMFGINVAASFGAPRLWTALSDGRILPT
. :: : .: : .* .:. **
Mb2022c|M.bovis_AF2122/97 WLAAVHPRFKVPFRAELVVGAVVA-------ALAATADIRGAIGFSSFGV
Rv1999c|M.tuberculosis_H37Rv WLAAVHPRFKVPFRAELVVGAVVA-------ALAATADIRGAIGFSSFGV
MAB_2598|M.abscessus_ATCC_1997 TLATVHPKYGVPYRAEILVGLVVS-------VLAATADLRGAIGFSSFAV
MAV_2087|M.avium_104 RFARVNPRTMTPVNNTVIVAVAAA-------TLAAFIPLQNLADMVSIGT
MUL_1244|M.ulcerans_Agy99 RFAAVHPRFQTPVSNTVVVAIAAA-------VLAALVPLNRLADMVSIGT
MMAR_2407|M.marinum_M VFAKVRPPNMTPVYNTIIVAVVIC-------ILAGFVPLSYLADVVSIGT
Mflv_1611|M.gilvum_PYR-GCK ALGLVHPTRRSPWVAIIFTTVIAFGLIAYVSAFASSNAISILGGTTSLLL
Mvan_5147|M.vanbaalenii_PYR-1 VLGTVHPTRRSPWVAILFTTLIAFGLIIYVSTFASSNAIAVLGGTTSLLL
MSMEG_5848|M.smegmatis_MC2_155 VLGSVHPRRLTPWVAILFTTLIAFGLIFYVSAFANSSAIAVLGGTTSLLL
TH_4382|M.thermoresistible__bu VLGSVHPRRRTPWVAIIFTTLIAFGLIFYVTAFADSTAIAVLGGTTSLLL
MLBr_01974|M.leprae_Br4923 RLSSKN-RFGVPIVAFGITAFLTLAFP-----LSLRFDSLNLTGLAVIAR
:. . * .. :: . :
Mb2022c|M.bovis_AF2122/97 LVYYAIANASALTLGLDEGR--PRR--------LIPLVGLIGCVVLAFAL
Rv1999c|M.tuberculosis_H37Rv LVYYAIANASALTLGLDEGR--PRR--------LIPLVGLIGCVVLAFAL
MAB_2598|M.abscessus_ATCC_1997 LVYYAVANASAWTLTPSQGR--PAR--------IIPAVGLVGCVIVSLAL
MAV_2087|M.avium_104 LTAFVVVSVGVIVLRVREPD--LPRGFRVPGYPVTPVLSIMACGYILASL
MUL_1244|M.ulcerans_Agy99 LTAFIVVSVGVIILRVREPA--LPRGFWVPGYPVTPILSILACGYLLYSL
MMAR_2407|M.marinum_M LVAFIVVSVGVVILRVREPD--LPRGFKVPLYPVTPVLSVLACGYILFSL
Mflv_1611|M.gilvum_PYR-GCK LSVFAVVNVAVLVLRRDVVR----AGGHFTTPTALPVIGFLASLYLVLPF
Mvan_5147|M.vanbaalenii_PYR-1 LAVFAVVNVAVLALRRDVRE----AGGHFKTPTALPVIGFLASLFLVTPL
MSMEG_5848|M.smegmatis_MC2_155 LAVFAVVNIAVLVLRRDLRE----KGTHFKTPTVLPVIGFIASTYLVLPF
TH_4382|M.thermoresistible__bu LAVFAMVNVAVLVLRRDESRDPVVARRHFRTPTFLPVVGFVASLYLVTPL
MLBr_01974|M.leprae_Br4923 FIQFIIVPIALFALARSRTTNSVYVKRNVFTDKVLPITAVVVSAGLMVSF
: : :. . * * ..: . : .:
Mb2022c|M.bovis_AF2122/97 P---LSSVAAGAAVLGVGVAAYGVRRIITRRARQTDSGDTQRSGHPSAT-
Rv1999c|M.tuberculosis_H37Rv P---LSSVAAGAAVLGVGVAAYGVRRIITRRARQTDSGDTQRSGHPSAT-
MAB_2598|M.abscessus_ATCC_1997 P---LSSVAAGTGVLAVGVIVYALRRVSGPGRRE----------------
MAV_2087|M.avium_104 H---WYTWIAFSGWVLLALIFYFVWGRHHSALN---DAAVD--PSGQER-
MUL_1244|M.ulcerans_Agy99 H---WYTWIAFGGWVGIALIFYLFWGRHHSRLN---APALHDNPTGEER-
MMAR_2407|M.marinum_M P---WYTWLAFSIWVSVVLVFYFVWGRHHSALNDGGDGVIGAMPADAGDS
Mflv_1611|M.gilvum_PYR-GCK SGRPVQQYIVAGGLVVIGVVLFFITQLINKQLGIKSGRITDPTHLGSSPD
Mvan_5147|M.vanbaalenii_PYR-1 SGRPAQQYIVAATLVAIGVVLFFVTQLINRQLGIRDGHITDPTRLGSGTD
MSMEG_5848|M.smegmatis_MC2_155 SGRPAQQYILAGILIAIGIVLFGITTIINRRLGISSKAQIDPTHLTDAP-
TH_4382|M.thermoresistible__bu SGRPAQQYLLSVVLIVIGVLLFGVTMAINRQLGIPTRAVGDPAKMVLPPD
MLBr_01974|M.leprae_Br4923 DYRSIFLTRGGPNYFSISLIAITFIGIPAVAYLHYYRTSGIK--------
. : : .
Mb2022c|M.bovis_AF2122/97 --------
Rv1999c|M.tuberculosis_H37Rv --------
MAB_2598|M.abscessus_ATCC_1997 --------
MAV_2087|M.avium_104 --------
MUL_1244|M.ulcerans_Agy99 --------
MMAR_2407|M.marinum_M DVLAQRDH
Mflv_1611|M.gilvum_PYR-GCK --------
Mvan_5147|M.vanbaalenii_PYR-1 --------
MSMEG_5848|M.smegmatis_MC2_155 --------
TH_4382|M.thermoresistible__bu --------
MLBr_01974|M.leprae_Br4923 --------