For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_3524 | - | - | 100% (207) | - |
| M. thermoresistible (build 8) | TH_0258 | - | 6e-11 | 35.51% (107) | transcriptional repressor, TetR family protein, putative |
| M. thermoresistible (build 8) | TH_4015 | - | 1e-10 | 25.57% (176) | PUTATIVE - |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3860c | - | 1e-11 | 32.12% (193) | transcriptional regulatory protein TetR-family |
| M. gilvum PYR-GCK | Mflv_1676 | - | 9e-15 | 33.86% (189) | TetR family transcriptional regulator |
| M. tuberculosis H37Rv | Rv3830c | - | 1e-11 | 32.12% (193) | transcriptional regulatory protein TetR-family |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_3837 | - | 4e-12 | 27.27% (187) | transcriptional regulatory protein TetR |
| M. marinum M | MMAR_2812 | - | 4e-13 | 33.33% (189) | TetR family transcriptional regulator |
| M. avium 104 | MAV_2657 | - | 6e-16 | 35.23% (176) | transcriptional regulator |
| M. smegmatis MC2 155 | MSMEG_1420 | - | 2e-12 | 28.42% (190) | transcriptional regulatory protein |
| M. ulcerans Agy99 | MUL_2933 | - | 1e-13 | 33.86% (189) | TetR family transcriptional regulator |
| M. vanbaalenii PYR-1 | Mvan_0384 | - | 3e-14 | 37.34% (158) | TetR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
Mb3860c|M.bovis_AF2122/97 --MVRPP--QTARSERTREALRQAALVRFLAQGVEATSAEQIAEDAGVSL
Rv3830c|M.tuberculosis_H37Rv --MVRPP--QTARSERTREALRQAALVRFLAQGVEATSAEQIAEDAGVSL
Mflv_1676|M.gilvum_PYR-GCK --MVRPA--QTVRSERTREALRQAAVVRFLAQGVEETTAEQIAADAGVSL
MMAR_2812|M.marinum_M --MTVPTNRHELRRRSTHEALRRAALKSFACKGFAQVTVTELAREAGVTE
MUL_2933|M.ulcerans_Agy99 --MTVPTNRHELRRRSTHEALRRAALKSFARKGFAQVTVTELAREAGVTE
MAB_3837|M.abscessus_ATCC_1997 --MNAQPARVGRRPSTTRDEITAVAMTLFAQHGFDEVSVDDIAAAAGIAR
MSMEG_1420|M.smegmatis_MC2_155 ---MSEGSRAGRRRSTTQDHIAGVAIDLFAARGFDAVSVDDVAAAAGISR
TH_3524|M.thermoresistible__bu -----------VRGHRNREALIAAAIDLFTVNGYEQTTVEQIAEAAGVAP
MAV_2657|M.avium_104 -MARGDRSPRDAHADRVRNALLNAALNLFSTNGYDETTTDQIAESVGVSP
Mvan_0384|M.vanbaalenii_PYR-1 MTTGEQPSLRERKKTRTRETVRREAFRLFELNGYAQTTVDQIAEAADVSP
: :: : *. * .* .:. ::* ..::
Mb3860c|M.bovis_AF2122/97 RTFYRHFRSKHDLLFADYDAGLHWFRAALDARPADESIIDSVQ-AAIFSF
Rv3830c|M.tuberculosis_H37Rv RTFYRHFRSKHDLLFADYDAGLHWFRAALDARPADESIIDSVQ-AAIFSF
Mflv_1676|M.gilvum_PYR-GCK RTFYRHFASKHDLLFADYDAGLHWFRAALATRSPEDPILDTVQ-AAIMAA
MMAR_2812|M.marinum_M RTFFRHFPTKEAVLFQDYENQLEWLAQALAQRPVSEPLFDAVL-ASVAAF
MUL_2933|M.ulcerans_Agy99 RTFFRHFPTKEAVLFQDYENQLEWLARALAQRPVSEPLFDAVL-ASVAAF
MAB_3837|M.abscessus_ATCC_1997 RTVFRYYSSKNAIVWGDFDSHLGVMRALLDETADTVDTSTALR-QAVLTF
MSMEG_1420|M.smegmatis_MC2_155 RTLFRYYASKSAIPWGDFDSHLQHLQNLLRTLSSEVSLGDALR-EALLTF
TH_3524|M.thermoresistible__bu RTFFRHFAAKEDILFHGYADRLAEATRRFRAARSG-SLWKALA-EASEAV
MAV_2657|M.avium_104 RTFFRYFPTKESVLFFGEYDFIDAVSGVYLAQPEEASDFEALA-NSFALL
Mvan_0384|M.vanbaalenii_PYR-1 RTFFRYFPTKESVLFS--DDLLTPIIEAFLAAPAELSPVAAYRHAAAQVF
**.:*:: :* : : : : :
Mb3860c|M.bovis_AF2122/97 P-YDVDAVTKIASLRRGELEPSRIVRHMREVEADFADAIQAQLRRRNCDI
Rv3830c|M.tuberculosis_H37Rv P-YDVDAVTKIASLRRGELEPSRIVRHMREVEADFADAIQAQLRRRNCDI
Mflv_1676|M.gilvum_PYR-GCK P-YDDWAVTKIAAMRSQELDAGRIVRHIRQVEADFADAIDEHLARADGAS
MMAR_2812|M.marinum_M P-HDLEVVRQAATARSELISADRIANHLRVVQSSFAQVLTAFVRDR---Y
MUL_2933|M.ulcerans_Agy99 P-HDLEVVRQAATARSELISADRIANHLRVVQSSFAQVLTAFVRNR---Y
MAB_3837|M.abscessus_ATCC_1997 NDFPVDETPRHRMRMRMILEVPALQAYSMLMYTGWRDVIAQFVARR----
MSMEG_1420|M.smegmatis_MC2_155 NTYADHEMAEHRQRMRVILETEELQAYSMTMYAGWRTVIAEYVADR----
TH_3524|M.thermoresistible__bu ATAIAENPGIFLVRARMYGELPALRATMLRINDDWIDQMTTEVARWLG--
MAV_2657|M.avium_104 APGLKRIRKRIAQYHDAVASSLVLLGRERKNHEANAETVAQVIAER----
Mvan_0384|M.vanbaalenii_PYR-1 AAMAGPDFDYVIARQRLLYALPEAKGALWNEHVKAIRVLTTAIAER----
: :
Mb3860c|M.bovis_AF2122/97 AGAPDARLHIAVTARCVAAAVFGAMEAWMLGSDRSLGELARVCHVALESL
Rv3830c|M.tuberculosis_H37Rv AGAPDARLHIAVTARCVAAAVFGAMEAWMLGSDRSLGELARVCHVALESL
Mflv_1676|M.gilvum_PYR-GCK PGT-DERMRTTVTARCIAAAVFGAMEVWMLGEDSSLPELDRLCRHALDLL
MMAR_2812|M.marinum_M ADVANVDLVAEVAGATIAAALVVAVENWGR--NGCAVDLGELVAASLDLV
MUL_2933|M.ulcerans_Agy99 ADVANVDLVAEVAGATIAAALVVAVENWGR--YGCAEDLGELVAASLDLV
MAB_3837|M.abscessus_ATCC_1997 SGTDPGSLLPQTVAWTLLGVALAAYEQWLAD---ESSKLTTLLGKGFDAA
MSMEG_1420|M.smegmatis_MC2_155 LGMSTTDLMPQTVAWLMLGVALSAYENWLAD---ESVSLRGAIAAAFEVA
TH_3524|M.thermoresistible__bu -SDAAVDVRPRLAATVINGANRTAIDLWVSAD--GKGDLVELMADAVRLV
MAV_2657|M.avium_104 RRMPAPDSECRLLAAVGMLLVERALNQWLST---PGRSLDDLIRQEFAAL
Mvan_0384|M.vanbaalenii_PYR-1 -LDRPEDDQVRVTAGAIIGVFMAASDDAPLD--------GEAFLQALDIL
. * : .
Mb3860c|M.bovis_AF2122/97 RVGISDTWTTLTVSS---------
Rv3830c|M.tuberculosis_H37Rv RVGISDTWTTLTVSS---------
Mflv_1676|M.gilvum_PYR-GCK RTGIADPA----------------
MMAR_2812|M.marinum_M RSGLAPLS----------------
MUL_2933|M.ulcerans_Agy99 RSGLAPLS----------------
MAB_3837|M.abscessus_ATCC_1997 EVGLRALR----------------
MSMEG_1420|M.smegmatis_MC2_155 RPGLDALQPAH-------------
TH_3524|M.thermoresistible__bu RPTLDRIERESRTVANPVRRRDVV
MAV_2657|M.avium_104 PAVLK-------------------
Mvan_0384|M.vanbaalenii_PYR-1 ETGLPE------------------
: