For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VVGNHRSVSTQYETGRSSARSDSEQPVAPAGWRVLAPFRYREYRLLIAAVSLSIFAEGMWAVVMALQVIE LSNDPAALSLVATCLGAGLVGFVLVGGLAADRLSQRGIIIVVEAVNTVAVTAVAVLGFVDALRIWHMAVA AAALGIAAAFFFPAYSAILPRILPPEQLLAANGIEGVVRPVFQRAVGPAIAGLVVGALFPSAGALVVAVL FATGLALLVATRPPKAKDTGAQHEPRPHLLRDLRDGWVFMLRTPWLLWTLLFASLFVLVVLGPIEVLLPF VVAERFTHGAQTYGFILAFFGLGSALGALGVSSRRLPRRYLTVMMAMWSVGSVPLVIVGVTSSFPLMALA TFVIGVTDGTAMVIWGTLLQRRVPPELLGRVSSLDFFVSLAFMPVSFAIVGPLSKIVSMEAIFLAAGLLP VLLAAVAVWAAKMHRDEVAHPLR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. vanbaalenii PYR-1 | Mvan_4580 | - | - | 100% (443) | H+ antiporter protein |
| M. vanbaalenii PYR-1 | Mvan_4461 | - | 9e-24 | 27.25% (411) | H+ antiporter protein |
| M. vanbaalenii PYR-1 | Mvan_1167 | - | 2e-17 | 25.79% (380) | protein of unknown function DUF894, DitE |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1288c | - | 6e-21 | 27.43% (401) | integral membrane transport protein |
| M. gilvum PYR-GCK | Mflv_2234 | - | 3e-24 | 27.43% (412) | H+ antiporter protein |
| M. tuberculosis H37Rv | Rv1258c | - | 6e-21 | 27.43% (401) | integral membrane transport protein |
| M. leprae Br4923 | MLBr_02143 | - | 8e-05 | 24.17% (331) | hypothetical protein MLBr_02143 |
| M. abscessus ATCC 19977 | MAB_2780c | - | 6e-97 | 44.58% (415) | putative transporter |
| M. marinum M | MMAR_4182 | - | 4e-19 | 26.77% (396) | hypothetical protein MMAR_4182 |
| M. avium 104 | MAV_1406 | - | 1e-19 | 27.68% (401) | transporter, major facilitator family protein |
| M. smegmatis MC2 155 | MSMEG_5187 | - | 0.0 | 76.67% (420) | tetracycline-resistance determinant TetV |
| M. thermoresistible (build 8) | TH_1986 | - | 1e-177 | 72.18% (435) | tetracycline-resistance determinant TetV |
| M. ulcerans Agy99 | MUL_0051 | - | 9e-07 | 22.42% (397) | integral membrane protein |
CLUSTAL 2.0.9 multiple sequence alignment
MSMEG_5187|M.smegmatis_MC2_155 --------------------------------------------------
TH_1986|M.thermoresistible__bu --------------------------------------------------
Mvan_4580|M.vanbaalenii_PYR-1 --------------------------------------------------
MAB_2780c|M.abscessus_ATCC_199 --------------------------------------------------
Mb1288c|M.bovis_AF2122/97 --------------------------------------------------
Rv1258c|M.tuberculosis_H37Rv --------------------------------------------------
MMAR_4182|M.marinum_M --------------------------------------------------
MAV_1406|M.avium_104 --------------------------------------------------
Mflv_2234|M.gilvum_PYR-GCK --------------------------------------------------
MUL_0051|M.ulcerans_Agy99 --------------------------------------------------
MLBr_02143|M.leprae_Br4923 MSGRRRNHPGRLASIPGLRTRTGSRNQHPGIANYPADSSDFRPAQQRRAL
MSMEG_5187|M.smegmatis_MC2_155 ---------------------------------------MRSPR------
TH_1986|M.thermoresistible__bu --------------------------------VSTQYDIEPSAG------
Mvan_4580|M.vanbaalenii_PYR-1 -------------------------MVGNHRSVSTQYETGRSSARSDS--
MAB_2780c|M.abscessus_ATCC_199 --------------------------MDFPEQLKTEGVLGKNSGGSSGGE
Mb1288c|M.bovis_AF2122/97 --------------------------------------------------
Rv1258c|M.tuberculosis_H37Rv --------------------------------------------------
MMAR_4182|M.marinum_M --------------------------------------------------
MAV_1406|M.avium_104 --------------------------------------------------
Mflv_2234|M.gilvum_PYR-GCK --------------------------------------------------
MUL_0051|M.ulcerans_Agy99 --------------------------------------------------
MLBr_02143|M.leprae_Br4923 EQREQQAGQLDPARRSPSMPSANRYLPPLGQQQSEPQHNSAPPCGPYPGE
MSMEG_5187|M.smegmatis_MC2_155 ----PVAGWRVLAPFRIREYRLLIAAVTLSIFA-----------------
TH_1986|M.thermoresistible__bu ----TSGGWRVLAPFRIREYRLLITAVAITIFA-----------------
Mvan_4580|M.vanbaalenii_PYR-1 EQPVAPAGWRVLAPFRYREYRLLIAAVSLSIFA-----------------
MAB_2780c|M.abscessus_ATCC_199 SHPSTSGLPRALRPMRHRDYRLLTLGLAITLLG-----------------
Mb1288c|M.bovis_AF2122/97 -----------MRNSNRGPAFLILFATLMAAAG-----------------
Rv1258c|M.tuberculosis_H37Rv -----------MRNSNRGPAFLILFATLMAAAG-----------------
MMAR_4182|M.marinum_M -----------MRNSSRGPAFLILFATLAACAG-----------------
MAV_1406|M.avium_104 ---------------------MILFATLLATAG-----------------
Mflv_2234|M.gilvum_PYR-GCK -------MTPDTTPRSRTPLLLIMFAALMAGAG-----------------
MUL_0051|M.ulcerans_Agy99 -MHASAPVELWRSVRSLPDFWRLLQVRIASQFG-----------------
MLBr_02143|M.leprae_Br4923 RIKVTRAAAQRSREMGYRMYWMVQRAATADGADKSGLTALTWPVVTNFAV
:
MSMEG_5187|M.smegmatis_MC2_155 EGMWSVVMALQVIAIDNDPASLSLVATCLGVGLVAFVLVGGITADRIN--
TH_1986|M.thermoresistible__bu EGMWAVVMALQVIAIDNDPASLSLVATCMGVGLVAFVLVGGITADRIN--
Mvan_4580|M.vanbaalenii_PYR-1 EGMWAVVMALQVIELSNDPAALSLVATCLGAGLVGFVLVGGLAADRLS--
MAB_2780c|M.abscessus_ATCC_199 NGMWTVALVWQVIRMGLGPAQVAVVGTTFSVGLLLSVLPAGVAADRLP--
Mb1288c|M.bovis_AF2122/97 DGVSIVAFPWLVLQREGSAGQASIVASATMLPLLFATLVAGTAVDYFG--
Rv1258c|M.tuberculosis_H37Rv DGVSIVAFPWLVLQREGSAGQASIVASATMLPLLFATLVAGTAVDYFG--
MMAR_4182|M.marinum_M NGISIVAFPWLVLEREGSAGQASIVAGAITLPLLFSTLVAGTAVDYFG--
MAV_1406|M.avium_104 TGISIVAFPWLALQHRHSATDASIVAAAMTLPLVLATLIAGTAVDFFG--
Mflv_2234|M.gilvum_PYR-GCK NGISIVAFPWLVLQRTGSALDASIVAMAGTLPLLAATLIAGAAVDFLG--
MUL_0051|M.ulcerans_Agy99 DGLFQAGLAGALLFNPDRAADPMAIARAFAVLFLPYSLLGPFAGALMDRW
MLBr_02143|M.leprae_Br4923 DSAMAVALANTLFFAAASGESKSKVALYLLITIAPFAVIAPLIGPALDRL
. . : : :. : : . :
MSMEG_5187|M.smegmatis_MC2_155 --QRTIIIAVEVVNFVTVAVISALALLGVLKIWH--MAVAAGILGIAAAF
TH_1986|M.thermoresistible__bu --QRTIIIAVEAVNAVTVAVVAMLGLTGQLRIWH--LAVAAAVLGIAAAF
Mvan_4580|M.vanbaalenii_PYR-1 --QRGIIIVVEAVNTVAVTAVAVLGFVDALRIWH--MAVAAAALGIAAAF
MAB_2780c|M.abscessus_ATCC_199 --KLWVMRCSLAVQTALMLTTATLALTGAAHIWH--LALNSLLFGIAEGF
Mb1288c|M.bovis_AF2122/97 --RRRVSMVADALSGAAVAGVPLVAWGYGGDAVN--VLVLAVLAALAAAF
Rv1258c|M.tuberculosis_H37Rv --RRRVSMVADALSGAAVAGVPLVAWGYGGDAVN--VLVLAVLAALAAAF
MMAR_4182|M.marinum_M --RRPVSMVSDALSGSAVAIVPLIAWAFGDDAVS--VAVLAALGACSATF
MAV_1406|M.avium_104 --RRRVSLVCDWLSGAAVTAVPLTAWIFGAAAID--VAELAVLAFCAAAF
Mflv_2234|M.gilvum_PYR-GCK --RRRVSMISDALSALSVAAVPVIALVFGADAVN--VAVLAALAALGAFF
MUL_0051|M.ulcerans_Agy99 --DRRLVIVGANIGRLILIAGIGTILAFEAGDLL--LLFVALLANGLARF
MLBr_02143|M.leprae_Br4923 QHGRRVALATSFVLRTGLATLLIMNYDGATGSYPSMVLYPCALAMMVLSK
: : : : .
MSMEG_5187|M.smegmatis_MC2_155 FFPAYSAILPRILPPEQ--LLAANGVEGVVRPVFQRS--VGPAVAGMVIG
TH_1986|M.thermoresistible__bu FFPAYSALLPRILPPEQ--LLAANGVEGVVRPVFQRA--VGPAVAGMLVG
Mvan_4580|M.vanbaalenii_PYR-1 FFPAYSAILPRILPPEQ--LLAANGIEGVVRPVFQRA--VGPAIAGLVVG
MAB_2780c|M.abscessus_ATCC_199 YIPAYTALLPSLLPADE--LLAANGIEGILRPVMQLA--AGPAVSAAIVS
Mb1288c|M.bovis_AF2122/97 GPAGMTARDSMLPEAAARAGWSLDRINGAYEAILNLAFIVGPAIGGLMIA
Rv1258c|M.tuberculosis_H37Rv GPAGMTARDSMLPEAAARAGWSLDRINGAYEAILNLAFIVGPAIGGLMIA
MMAR_4182|M.marinum_M DPAGITARQSMLPEAAARAGWSLDRINSSYEAILNLAFVVGPGIGGLMIA
MAV_1406|M.avium_104 DPAGMTARQSMLPEAAARAGWSLDRTNSSYEAMLNLAFIVGPGLGGLLIA
Mflv_2234|M.gilvum_PYR-GCK DPAGMTARETMLPEAAHRAGWTLDRANSFFEAVFNLAYIVGPGIGGLLIA
MUL_0051|M.ulcerans_Agy99 VASGLSASLPHVVPREQ--VVTMNSVATASGAVAAFVGANFMLLPRWLAG
MLBr_02143|M.leprae_Br4923 SFSVLRSAVTPRVMPPSIDLVRVNSRLTVFGLLGGTIAGGAIAAGVEFVC
. : . : : .
MSMEG_5187|M.smegmatis_MC2_155 ATMPSIGAVVVAVLFALGLALLVATRPP--AQPASEHHERPHVLR----D
TH_1986|M.thermoresistible__bu ATFPSLGSAVVATLFGVGLVLLVATRPP--ASPSVPGEHRSRVLR----D
Mvan_4580|M.vanbaalenii_PYR-1 ALFPSAGALVVAVLFATGLALLVATRPPKAKDTGAQHEPRPHLLR----D
MAB_2780c|M.abscessus_ATCC_199 VWSPGGAFLLEGMLVGAGLSCLLLVRHK--HEPPASAEVRQHPLRRALAD
Mb1288c|M.bovis_AF2122/97 TVGGITTMWITATAFGLSILAIAALQLEGAGKPHHTSRPQGLVSG-----
Rv1258c|M.tuberculosis_H37Rv TVGGITTMWITATAFGLSILAIAALQLEGAGKPHHTSRPQGLVSG-----
MMAR_4182|M.marinum_M TVGGITTMWITAGAFGLSLLAIGALRLEGAGRPHHETRPDGLVSG-----
MAV_1406|M.avium_104 TLGGINTMWVTAGCFALSFLAIGALRLEGAGKPPRATRPVGLVTG-----
Mflv_2234|M.gilvum_PYR-GCK TLGGIDTMWVTAGAFVLSIAAIAVLRLEGTARPDPSTMSDGVWAG-----
MUL_0051|M.ulcerans_Agy99 GGDHGAAAVIFTAMIPVAISLLLALRFAPRVLGPDDTKRAIHGSAVY--A
MLBr_02143|M.leprae_Br4923 AHLFKLPGALFVVAAITISGALLSMRIPRWVEVTAGEIPATLSYRLHRKP
: : :
MSMEG_5187|M.smegmatis_MC2_155 LREGFAFVLKTPWLL---------WTVLFASMFVLVVLGPIEVLLPFIAQ
TH_1986|M.thermoresistible__bu LRDGFMFMVATPWLL---------WTLLFASVFVLVVLGPIEVLLPFIAQ
Mvan_4580|M.vanbaalenii_PYR-1 LRDGWVFMLRTPWLL---------WTLLFASLFVLVVLGPIEVLLPFVVA
MAB_2780c|M.abscessus_ATCC_199 LAEGFRYMVRTTWFF---------ATLLFAIGYVLVVVGPIEILLPFVIR
Mb1288c|M.bovis_AF2122/97 IAEGLRFVWNLRVLR---------TLGMIDLTVTALYLPMESVLFPKYFT
Rv1258c|M.tuberculosis_H37Rv IAEGLRFVWNLRVLR---------TLGMIDLTVTALYLPMESVLFPKYFT
MMAR_4182|M.marinum_M VTQGLRFVWNLRVLR---------ALALIDLTVTALYLPMESVLFPTYFS
MAV_1406|M.avium_104 IAEGVRFVWNLRVLR---------TLGLIDLAVTALYLPMESVLFPKYFA
Mflv_2234|M.gilvum_PYR-GCK ILEGLRFVWNNKVLR---------TLAFVDLAATGLYMPMESVLFPKYFT
MUL_0051|M.ulcerans_Agy99 VITGWMHGVRTVVQIP------TVAAALSGLAAHRMVVGVNSLLILLLVH
MLBr_02143|M.leprae_Br4923 LRQSWPEEVKKVSGRLRQPLGRNIITSLWGNCTIKVMVGFLFLYPAFVAK
: . : : : :
MSMEG_5187|M.smegmatis_MC2_155 DRFADGARAYGFILAFFGIGSAMGALTVSSRR--MPRRYLTTMMLMWGLG
TH_1986|M.thermoresistible__bu ERFTDGARMYGFVLAAFGVGSAVGALTVSSRQ--MPRRYLTVMMLMWALG
Mvan_4580|M.vanbaalenii_PYR-1 ERFTHGAQTYGFILAFFGLGSALGALGVSSRR--LPRRYLTVMMAMWSVG
MAB_2780c|M.abscessus_ATCC_199 DHGGD-PGAHATVLALFGLAGAVGSFIVSSLP--LARRYLTVMILMWGAG
Mb1288c|M.bovis_AF2122/97 D--HQQPVQLGWALMAIAGGGLVGALGYAVLA--IRVPRRVTMSTAVLTL
Rv1258c|M.tuberculosis_H37Rv D--HQQPVQLGWALMAIAGGGLVGALGYAVLA--IRVPRRVTMSTAVLTL
MMAR_4182|M.marinum_M D--RQQPAQLGSVLVALSLGSLVGALGYGMLS--NYVSRRTIMLTAVLTL
MAV_1406|M.avium_104 D--QHQPAQLGWALMALALGGVAGALGYAVLS--ARLRRRTAVLTATLTF
Mflv_2234|M.gilvum_PYR-GCK D--RDEPAQLGWVLMALSIGGLLGALGFAVLS--KYLKRRTVMLTAVLTL
MUL_0051|M.ulcerans_Agy99 HMRDVDVEGLGTALLFFAATGLGAFLANVLTPGLIRRWGRYATTNGALAA
MLBr_02143|M.leprae_Br4923 EHQANGWVQLGMLGLIGTAAAIGNFAGNFTSARLQLGRPAVLVVRCTIAV
. . .
MSMEG_5187|M.smegmatis_MC2_155 SIPLVIVGYTSSFPLMAAATFVIGVTDGAGMVIWGTLLQRRVPTEMLG--
TH_1986|M.thermoresistible__bu SVPLLVIGFTWSFLLMSAASFAIGVTDGAGMVIWGTLLQRRVPRELLG--
Mvan_4580|M.vanbaalenii_PYR-1 SVPLVIVGVTSSFPLMALATFVIGVTDGTAMVIWGTLLQRRVPPELLG--
MAB_2780c|M.abscessus_ATCC_199 SLPLIFIGFTGHVWMIAVAMIIVGGTMQAANVIWGTLMQRRVPEEMLG--
Mb1288c|M.bovis_AF2122/97 GLASMVIAFLPPLPVIMVLCAVVGLVYGPIQPIYNYVIQTRAAQHLRG--
Rv1258c|M.tuberculosis_H37Rv GLASMVIAFLPPLPVIMVLCAVVGLVYGPIQPIYNYVIQTRAAQHLRG--
MMAR_4182|M.marinum_M GAATTGIALLPPLPVILVLCALIGVVYGPIQPIYNYVMQTRAPHYLRG--
MAV_1406|M.avium_104 GATTAGIAVLPPLPVILGLCAVTGVVYGPIQPIYNFVMQTRAPHHLRG--
Mflv_2234|M.gilvum_PYR-GCK GVAMTVIAFLPPLPIILVLCALVGFVYGPIAPIYNYVMQTRAPQHLRG--
MUL_0051|M.ulcerans_Agy99 AAVTQLAGAGLLLPVMVVCGFLLGVAGQVVKLCADSAMQIDVDGALRG--
MLBr_02143|M.leprae_Br4923 TVLALAASVAGNLLMTTIATLITSGSSAIAKASLDASLQNDLPEESRASG
. . : . . :* .
MSMEG_5187|M.smegmatis_MC2_155 --RVSSLDFFVSLAFMPLSFAIVGPLSKVVSMEVIFATAGLVPVAIAAVA
TH_1986|M.thermoresistible__bu --RVSSLDFFVSLVFMPVSFAIAGPLSKVVSMQTIFLVAGLAPLLFAVVA
Mvan_4580|M.vanbaalenii_PYR-1 --RVSSLDFFVSLAFMPVSFAIVGPLSKIVSMEAIFLAAGLLPVLLAAVA
MAB_2780c|M.abscessus_ATCC_199 --RAASMDFFVSLVGLPASFALVVPVAHVIGNTTVFVIAGVAPLVLAAAA
Mb1288c|M.bovis_AF2122/97 --RVVGVMTSLAYAAGPLGLLLAGPLTDAAGLHATFLALALPIVCTGLVA
Rv1258c|M.tuberculosis_H37Rv --RVVGVMTSLAYAAGPLGLLLAGPLTDAAGLHATFLALALPIVCTGLVA
MMAR_4182|M.marinum_M --RVVGVMTSLAYAAGPLGLLLAGPVADAAGLKVAFFALALPIAITGLMC
MAV_1406|M.avium_104 --RVVGVMAGLTYAAGPLGLLVAGPLADAAGLKATFLTLAVPILAIGVVA
Mflv_2234|M.gilvum_PYR-GCK --RVVGVMGSLAYAAGPLGLILAGPLADSAGLHVTFLALSLPMLALGIVS
MUL_0051|M.ulcerans_Agy99 --HVFAVQDALFWVSYIVSVTVAAALIPDDGRAPVFVLVGSLIYLLGLCV
MLBr_02143|M.leprae_Br4923 FGRSESTLQLAWVLGGALGVMVYTDLWVGFTAVSALLILGLAQTVVSFRG
: . .. : : : . .
MSMEG_5187|M.smegmatis_MC2_155 FTAARMHRDEVANPLL-------------
TH_1986|M.thermoresistible__bu MTAARMPRDELEHPLN-------------
Mvan_4580|M.vanbaalenii_PYR-1 VWAAKMHRDEVAHPLR-------------
MAB_2780c|M.abscessus_ATCC_199 HIVARLGRDEMAHPLG-------------
Mb1288c|M.bovis_AF2122/97 IRLPALRELDLAPQADIDRPVGSAQ----
Rv1258c|M.tuberculosis_H37Rv IRLPALRELDLAPQADIDRPVGSAQ----
MMAR_4182|M.marinum_M IRLPSLRELDHAPTQDISETSLL------
MAV_1406|M.avium_104 CGLPSLRELDRAPQFADDPGA--------
Mflv_2234|M.gilvum_PYR-GCK VFLPALRELDTPHP---------------
MUL_0051|M.ulcerans_Agy99 HSIVGRRSSASNVEGC-------------
MLBr_02143|M.leprae_Br4923 DSLIPGLGGNRPVMIEQESMRRAAAVSPQ