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ITPSVFEATRPQLTAMAFRMLGSIHDAEDAVQSAWIKASITATDDLRNPAAYLTTVLTRECVDQLRMRQR RREEPLAADMIPADTVAADEHYLRRESISRALMVVLDRLTPSQRVAYVLHDVFAVPFQEIAETLGTSPAS AKKHASRARERIHRTVQIPAAATIDSAVVEAFLAAAAGGDTATMVALMADDCVRVADPTLLPAHTPAVVI GDSAVADETSLFIDRIRVSAPMLVDGRTVHVIAPGGHELAVIDITVTDGRIARIEITRTHPSGRR*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. gilvum PYR-GCK | Mflv_1191 | - | - | 100% (276) | ECF subfamily RNA polymerase sigma-24 factor |
| M. gilvum PYR-GCK | Mflv_4852 | - | 4e-32 | 40.09% (222) | RNA polymerase sigma factor SigJ |
| M. gilvum PYR-GCK | Mflv_1927 | - | 1e-25 | 31.07% (280) | ECF subfamily RNA polymerase sigma-24 factor |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3361c | sigJ | 6e-32 | 43.00% (207) | RNA polymerase sigma factor SigJ |
| M. tuberculosis H37Rv | Rv3328c | sigJ | 6e-32 | 43.00% (207) | RNA polymerase sigma factor SigJ |
| M. leprae Br4923 | MLBr_01076 | sigE | 6e-10 | 28.57% (140) | RNA polymerase sigma factor SigE |
| M. abscessus ATCC 19977 | MAB_4733 | - | 1e-66 | 53.88% (258) | putative RNA polymerase sigma factor |
| M. marinum M | MMAR_3687 | - | 8e-38 | 38.46% (273) | alternative RNA polymerase sigma factor SigJ-like protein |
| M. avium 104 | MAV_2475 | - | 7e-56 | 47.25% (273) | RNA polymerase sigma factor |
| M. smegmatis MC2 155 | MSMEG_1692 | - | 5e-30 | 31.47% (251) | ECF-family protein RNA polymerase sigma factor |
| M. thermoresistible (build 8) | TH_1144 | - | 7e-25 | 29.82% (275) | RNA polymerase sigma factor, sigma-70 family protein |
| M. ulcerans Agy99 | MUL_3630 | - | 7e-38 | 38.46% (273) | alternative RNA polymerase sigma factor SigJ- like |
| M. vanbaalenii PYR-1 | Mvan_4710 | - | 1e-74 | 55.72% (271) | ECF subfamily RNA polymerase sigma-24 factor |
CLUSTAL 2.0.9 multiple sequence alignment
Mb3361c|M.bovis_AF2122/97 -----------------MEVSEFEALRQHLMSVAYRLTGTVADAEDIVQE
Rv3328c|M.tuberculosis_H37Rv -----------------MEVSEFEALRQHLMSVAYRLTGTVADAEDIVQE
MSMEG_1692|M.smegmatis_MC2_155 MDPAPSSASDPAWTELSEAEAVFTRVRPRLFGVAYRMTGTVAEAEDAVQE
TH_1144|M.thermoresistible__bu -----VTVGSAAGAADGEHAERFTLLRPLLFTIAYEILGSATEADDVLQD
Mflv_1191|M.gilvum_PYR-GCK ----------------MITPSVFEATRPQLTAMAFRMLGSIHDAEDAVQS
Mvan_4710|M.vanbaalenii_PYR-1 --------MTLDSFAQSAVHSAFLEGRPRLLSLAHRLLGSAHDAEDAVQT
MAB_4733|M.abscessus_ATCC_1997 ----------------MDLIEKFEAERPRLLSVAHRILGSRHDAEDAVQS
MAV_2475|M.avium_104 ---------MNAPRNLAELAQRFDDDRRHLRSVAFQLLGSLADADDAVQS
MMAR_3687|M.marinum_M -------------MTDPALLARFQAARPRLGALAYRMLGSLADAEDVVQE
MUL_3630|M.ulcerans_Agy99 -------------MTDPALLARFQAARPRLGALAYRMLGSLADAEDVVQE
MLBr_01076|M.leprae_Br4923 ------MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIIT
: . ..:* :
Mb3361c|M.bovis_AF2122/97 AWLRWDSQD------TVIADPRAWLTTVVSRLGLDKLRSAAHRRETYTGT
Rv3328c|M.tuberculosis_H37Rv AWLRWDSPD------TVIADPRAWLTTVVSRLGLDKLRSAAHRRETYTGT
MSMEG_1692|M.smegmatis_MC2_155 AWLRWQDTDR-----AAVTDPVPFLMTVVTRICLNVLQSARARHETYIGP
TH_1144|M.thermoresistible__bu GYLRWSQVDL-----GTVRDTKAFLAQLITREALKVLRTRSRRREDYVGP
Mflv_1191|M.gilvum_PYR-GCK AWIKASIT-----ATDDLRNPAAYLTTVLTRECVDQLRMRQRRREEPLAA
Mvan_4710|M.vanbaalenii_PYR-1 AWLRVAATP----GPRDIANPSAWLTTVVTRVCLDQLRDRSRRDVLSRRV
MAB_4733|M.abscessus_ATCC_1997 AWIRAQSA-----APNRVDNAPGWLTTVTARLCLDQLRARERHGEVPLTA
MAV_2475|M.avium_104 AWLKASRA-----DFAAVDNLSGWFTTITAREALDQLRARKRRAELPLAA
MMAR_3687|M.marinum_M AWLRLNATTDRPQGAQELVNLDAWLTTVVARLCLNLLRDRRGRGREELVG
MUL_3630|M.ulcerans_Agy99 AWLRLNATTDRPEGAQELVNLDAWLTTVVARLCLNLLRDRRGRGREELVG
MLBr_01076|M.leprae_Br4923 NLLSPTIMS-----HPPPSRDDDWVEPFDALQGTAVFDATG---------
: :. . : :
Mb3361c|M.bovis_AF2122/97 WLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLHDGF
Rv3328c|M.tuberculosis_H37Rv WLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLHDGF
MSMEG_1692|M.smegmatis_MC2_155 WLPEP---VDTTADPALGAERGAALELATLMLLERLAPPERAAYILREAF
TH_1144|M.thermoresistible__bu WLPEPL--LLEDHDPESDVVLAESVSMAMLVLLETLSPDERAVFVLREVF
Mflv_1191|M.gilvum_PYR-GCK -----DMIPADTVAADEHYLRRESISRALMVVLDRLTPSQRVAYVLHDVF
Mvan_4710|M.vanbaalenii_PYR-1 -----QPVQTVAYAADEEFLHREDVARALMVLLGRLTPAQRAAYVLHDLF
MAB_4733|M.abscessus_ATCC_1997 -----EHISDTQFAADEEFLRREEVSRAVLVVLDELSPKQRVAYVLHDLF
MAV_2475|M.avium_104 PEELDRLAVAASSPADEDTLLAESVSTALLVVLDRLSPAQRVAFVLHDVF
MMAR_3687|M.marinum_M QLPDPIVDGVAAFDPEHHAMLADAVGLALFVVLDTLAPAERLAFVLHDVF
MUL_3630|M.ulcerans_Agy99 QLPDPIVDGVAAFDPEHHAMLADAVGLALFVVLDTLAPAERLAFVLHDVF
MLBr_01076|M.leprae_Br4923 ---------DKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETF
. . : . : :: *
Mb3361c|M.bovis_AF2122/97 AVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDP---AHNEV
Rv3328c|M.tuberculosis_H37Rv AVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDP---AHNEV
MSMEG_1692|M.smegmatis_MC2_155 DYPYEQIAETVGVSVPNARQLVSRARRRVTTRR--AAPVATA---EQDRL
TH_1144|M.thermoresistible__bu DFDYDEIAGAVGKSVPAVRQVAHRSREHVRARRKRFDPVPAA---QTTEL
Mflv_1191|M.gilvum_PYR-GCK AVPFQEIAETLGTSPASAKKHASRARERIHRTVQIPAAAT-----IDSAV
Mvan_4710|M.vanbaalenii_PYR-1 AVPFDRVADILGVTPAGAKKHASRARARLRPVEPPSTGAPGD--AVDREV
MAB_4733|M.abscessus_ATCC_1997 AVPFGDIAAVLDTTAVSAKKLASRARARLGAADPERAREVG----SQLEI
MAV_2475|M.avium_104 AMPFETIAELLNRSPDAAKKLASRARARLHAAPAGPPRRDGHRIERHVEV
MMAR_3687|M.marinum_M AVPFDQIAPILERTPEATRKLASRARRRIERAEPFPDRDLC----AQREV
MUL_3630|M.ulcerans_Agy99 AVPFDQIAPILERTPEATRKLASRARRRIERAEPFPDRDLC----AQREV
MLBr_01076|M.leprae_Br4923 IRVFRSVQN---YQPGTFEGWLHRITTNLFLDMVRRRARIR-----MDAL
: : . * : :
Mb3361c|M.bovis_AF2122/97 VGRLMAAMAAGDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRF
Rv3328c|M.tuberculosis_H37Rv VGRLMAAMAAGDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRF
MSMEG_1692|M.smegmatis_MC2_155 LRAFVTAARSGDLDALEEILAEDVVSHTDGNGARNAAQIPVVGRTTVAKF
TH_1144|M.thermoresistible__bu AEEFIHAATTGDLDRLLSLLAPGATFTTDHGGKAPAVARPVEGAKKVANL
Mflv_1191|M.gilvum_PYR-GCK VEAFLAAAAGGDTATMVALMADDCVRVADPTLLPAHTPAVVIGDSAVADE
Mvan_4710|M.vanbaalenii_PYR-1 VDAFLRAAGGGDIVRMVALMAPDAVRIVDPELLPTGTAAVVTGATAIAEE
MAB_4733|M.abscessus_ATCC_1997 VEAFLSAARGGDIERLITLMAPDVIRTVDHTLIPSGAATLVRGAQAVAEE
MAV_2475|M.avium_104 VQAFLAASRGGDIAALLQLLAADVLRTVDPVLVPADVPTALRGATRVAQE
MMAR_3687|M.marinum_M VDAFFAAGRSGNFERLVSVLHPDVVLRGD--FGPNTPRFRAQGAATVAKL
MUL_3630|M.ulcerans_Agy99 VDAFFAAGRSGNFERLVSVLHPDVVLRGD--FGPNTPRFRAQGAATVAKL
MLBr_01076|M.leprae_Br4923 PDDYDRVPAD---EPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDI
. : . * . :
Mb3361c|M.bovis_AF2122/97 ILGLVQRYGPGLFGANQLALVNGELGAYTAGLPGVDGYRAMAPRITAITV
Rv3328c|M.tuberculosis_H37Rv ILGLVQRYGPGLFGANQLALVNGELGAYTAGLPGVDGYRAMAPRITAITV
MSMEG_1692|M.smegmatis_MC2_155 VR-AFRNR---LWPGASLRWITANGHSAVLVVHDDS-----PAAFLTVAA
TH_1144|M.thermoresistible__bu VMGFFRNRH--RVPDLRLEATNCNHAPAVLVYTGDH-----LEAVVLLEI
Mflv_1191|M.gilvum_PYR-GCK TSLFIDRIR------VSAPMLVDGRTVHVIAPGGHE-----LAVIDITV-
Mvan_4710|M.vanbaalenii_PYR-1 TRHFADRIR------ASVRMRVSGREAHIIAPGGHP-----LGIIDIRC-
MAB_4733|M.abscessus_ATCC_1997 TRSFTDRIA------VAAILLIDGRVGAVIAPGGHP-----FALIRMDT-
MAV_2475|M.avium_104 TRRFAGRAR------AGAVMLIDGTPGIVIAARGRA-----QILLMIGIG
MMAR_3687|M.marinum_M ARSYAGPER------TVLNALVNGAAGAVISISEQA-----SAVMGFLV-
MUL_3630|M.ulcerans_Agy99 ARSYAGPER------TVLNTLVNGAAGAVISISEQA-----SAVMRFLV-
MLBr_01076|M.leprae_Br4923 EGLSYEEIG------ATLGVKLGTVRSRIHRGRQ----------------
Mb3361c|M.bovis_AF2122/97 RDGKVCALWDIANPDKFTGSPLKERRAQPTGRGRHHRN------------
Rv3328c|M.tuberculosis_H37Rv RDGKVCALWDIANPDKFTGSPLKERRAQPTGRGRHHRN------------
MSMEG_1692|M.smegmatis_MC2_155 SADGIHRLLWVLAPEKLAGIAQAQGR------------------------
TH_1144|M.thermoresistible__bu VDGAITNLYATRNPDKLAAVAAPRTITR----------------------
Mflv_1191|M.gilvum_PYR-GCK TDGRIARIEITRTHPSGRR-------------------------------
Mvan_4710|M.vanbaalenii_PYR-1 SGGLITGITITPVCAADVLEPAAQPA------------------------
MAB_4733|M.abscessus_ATCC_1997 DGRLVTCIDIAPYTSGDAALSLIATAGSKVSYSPGESGRRIDPRGSGLPR
MAV_2475|M.avium_104 ADDRIHTIDITGDPERIRRAALALPPAVRFRNITT---------------
MMAR_3687|M.marinum_M RNGRIAAIDVLADPQRIATLDISGLSGPGG--------------------
MUL_3630|M.ulcerans_Agy99 RNGRIAAIDVLADPQRIATLDISGLSGPGG--------------------
MLBr_01076|M.leprae_Br4923 ---ALRDYLLTAHPRDGATTDATHVKSA----------------------
:
Mb3361c|M.bovis_AF2122/97 ---
Rv3328c|M.tuberculosis_H37Rv ---
MSMEG_1692|M.smegmatis_MC2_155 ---
TH_1144|M.thermoresistible__bu ---
Mflv_1191|M.gilvum_PYR-GCK ---
Mvan_4710|M.vanbaalenii_PYR-1 ---
MAB_4733|M.abscessus_ATCC_1997 VDH
MAV_2475|M.avium_104 ---
MMAR_3687|M.marinum_M ---
MUL_3630|M.ulcerans_Agy99 ---
MLBr_01076|M.leprae_Br4923 ---