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ITPSVFEATRPQLTAMAFRMLGSIHDAEDAVQSAWIKASITATDDLRNPAAYLTTVLTRECVDQLRMRQR RREEPLAADMIPADTVAADEHYLRRESISRALMVVLDRLTPSQRVAYVLHDVFAVPFQEIAETLGTSPAS AKKHASRARERIHRTVQIPAAATIDSAVVEAFLAAAAGGDTATMVALMADDCVRVADPTLLPAHTPAVVI GDSAVADETSLFIDRIRVSAPMLVDGRTVHVIAPGGHELAVIDITVTDGRIARIEITRTHPSGRR*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. gilvum PYR-GCK | Mflv_1191 | - | - | 100% (276) | ECF subfamily RNA polymerase sigma-24 factor |
M. gilvum PYR-GCK | Mflv_4852 | - | 4e-32 | 40.09% (222) | RNA polymerase sigma factor SigJ |
M. gilvum PYR-GCK | Mflv_1927 | - | 1e-25 | 31.07% (280) | ECF subfamily RNA polymerase sigma-24 factor |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3361c | sigJ | 6e-32 | 43.00% (207) | RNA polymerase sigma factor SigJ |
M. tuberculosis H37Rv | Rv3328c | sigJ | 6e-32 | 43.00% (207) | RNA polymerase sigma factor SigJ |
M. leprae Br4923 | MLBr_01076 | sigE | 6e-10 | 28.57% (140) | RNA polymerase sigma factor SigE |
M. abscessus ATCC 19977 | MAB_4733 | - | 1e-66 | 53.88% (258) | putative RNA polymerase sigma factor |
M. marinum M | MMAR_3687 | - | 8e-38 | 38.46% (273) | alternative RNA polymerase sigma factor SigJ-like protein |
M. avium 104 | MAV_2475 | - | 7e-56 | 47.25% (273) | RNA polymerase sigma factor |
M. smegmatis MC2 155 | MSMEG_1692 | - | 5e-30 | 31.47% (251) | ECF-family protein RNA polymerase sigma factor |
M. thermoresistible (build 8) | TH_1144 | - | 7e-25 | 29.82% (275) | RNA polymerase sigma factor, sigma-70 family protein |
M. ulcerans Agy99 | MUL_3630 | - | 7e-38 | 38.46% (273) | alternative RNA polymerase sigma factor SigJ- like |
M. vanbaalenii PYR-1 | Mvan_4710 | - | 1e-74 | 55.72% (271) | ECF subfamily RNA polymerase sigma-24 factor |
CLUSTAL 2.0.9 multiple sequence alignment Mb3361c|M.bovis_AF2122/97 -----------------MEVSEFEALRQHLMSVAYRLTGTVADAEDIVQE Rv3328c|M.tuberculosis_H37Rv -----------------MEVSEFEALRQHLMSVAYRLTGTVADAEDIVQE MSMEG_1692|M.smegmatis_MC2_155 MDPAPSSASDPAWTELSEAEAVFTRVRPRLFGVAYRMTGTVAEAEDAVQE TH_1144|M.thermoresistible__bu -----VTVGSAAGAADGEHAERFTLLRPLLFTIAYEILGSATEADDVLQD Mflv_1191|M.gilvum_PYR-GCK ----------------MITPSVFEATRPQLTAMAFRMLGSIHDAEDAVQS Mvan_4710|M.vanbaalenii_PYR-1 --------MTLDSFAQSAVHSAFLEGRPRLLSLAHRLLGSAHDAEDAVQT MAB_4733|M.abscessus_ATCC_1997 ----------------MDLIEKFEAERPRLLSVAHRILGSRHDAEDAVQS MAV_2475|M.avium_104 ---------MNAPRNLAELAQRFDDDRRHLRSVAFQLLGSLADADDAVQS MMAR_3687|M.marinum_M -------------MTDPALLARFQAARPRLGALAYRMLGSLADAEDVVQE MUL_3630|M.ulcerans_Agy99 -------------MTDPALLARFQAARPRLGALAYRMLGSLADAEDVVQE MLBr_01076|M.leprae_Br4923 ------MGDGIGMEREGRWTGNTQCPLRVVPGDESPTLDGRASPEDLIIT : . ..:* : Mb3361c|M.bovis_AF2122/97 AWLRWDSQD------TVIADPRAWLTTVVSRLGLDKLRSAAHRRETYTGT Rv3328c|M.tuberculosis_H37Rv AWLRWDSPD------TVIADPRAWLTTVVSRLGLDKLRSAAHRRETYTGT MSMEG_1692|M.smegmatis_MC2_155 AWLRWQDTDR-----AAVTDPVPFLMTVVTRICLNVLQSARARHETYIGP TH_1144|M.thermoresistible__bu GYLRWSQVDL-----GTVRDTKAFLAQLITREALKVLRTRSRRREDYVGP Mflv_1191|M.gilvum_PYR-GCK AWIKASIT-----ATDDLRNPAAYLTTVLTRECVDQLRMRQRRREEPLAA Mvan_4710|M.vanbaalenii_PYR-1 AWLRVAATP----GPRDIANPSAWLTTVVTRVCLDQLRDRSRRDVLSRRV MAB_4733|M.abscessus_ATCC_1997 AWIRAQSA-----APNRVDNAPGWLTTVTARLCLDQLRARERHGEVPLTA MAV_2475|M.avium_104 AWLKASRA-----DFAAVDNLSGWFTTITAREALDQLRARKRRAELPLAA MMAR_3687|M.marinum_M AWLRLNATTDRPQGAQELVNLDAWLTTVVARLCLNLLRDRRGRGREELVG MUL_3630|M.ulcerans_Agy99 AWLRLNATTDRPEGAQELVNLDAWLTTVVARLCLNLLRDRRGRGREELVG MLBr_01076|M.leprae_Br4923 NLLSPTIMS-----HPPPSRDDDWVEPFDALQGTAVFDATG--------- : :. . : : Mb3361c|M.bovis_AF2122/97 WLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLHDGF Rv3328c|M.tuberculosis_H37Rv WLPEPVVTGLDATDPLAAVVAAEDARFAAMVVLERLRPDQRVAFVLHDGF MSMEG_1692|M.smegmatis_MC2_155 WLPEP---VDTTADPALGAERGAALELATLMLLERLAPPERAAYILREAF TH_1144|M.thermoresistible__bu WLPEPL--LLEDHDPESDVVLAESVSMAMLVLLETLSPDERAVFVLREVF Mflv_1191|M.gilvum_PYR-GCK -----DMIPADTVAADEHYLRRESISRALMVVLDRLTPSQRVAYVLHDVF Mvan_4710|M.vanbaalenii_PYR-1 -----QPVQTVAYAADEEFLHREDVARALMVLLGRLTPAQRAAYVLHDLF MAB_4733|M.abscessus_ATCC_1997 -----EHISDTQFAADEEFLRREEVSRAVLVVLDELSPKQRVAYVLHDLF MAV_2475|M.avium_104 PEELDRLAVAASSPADEDTLLAESVSTALLVVLDRLSPAQRVAFVLHDVF MMAR_3687|M.marinum_M QLPDPIVDGVAAFDPEHHAMLADAVGLALFVVLDTLAPAERLAFVLHDVF MUL_3630|M.ulcerans_Agy99 QLPDPIVDGVAAFDPEHHAMLADAVGLALFVVLDTLAPAERLAFVLHDVF MLBr_01076|M.leprae_Br4923 ---------DKATMPSWEELVRQHAARVYWLAYRLSGNQHDAEDLTQETF . . : . : :: * Mb3361c|M.bovis_AF2122/97 AVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDP---AHNEV Rv3328c|M.tuberculosis_H37Rv AVPFAEVAEVLGTSEAAARQLASRARKAVTAQPALISGDPDP---AHNEV MSMEG_1692|M.smegmatis_MC2_155 DYPYEQIAETVGVSVPNARQLVSRARRRVTTRR--AAPVATA---EQDRL TH_1144|M.thermoresistible__bu DFDYDEIAGAVGKSVPAVRQVAHRSREHVRARRKRFDPVPAA---QTTEL Mflv_1191|M.gilvum_PYR-GCK AVPFQEIAETLGTSPASAKKHASRARERIHRTVQIPAAAT-----IDSAV Mvan_4710|M.vanbaalenii_PYR-1 AVPFDRVADILGVTPAGAKKHASRARARLRPVEPPSTGAPGD--AVDREV MAB_4733|M.abscessus_ATCC_1997 AVPFGDIAAVLDTTAVSAKKLASRARARLGAADPERAREVG----SQLEI MAV_2475|M.avium_104 AMPFETIAELLNRSPDAAKKLASRARARLHAAPAGPPRRDGHRIERHVEV MMAR_3687|M.marinum_M AVPFDQIAPILERTPEATRKLASRARRRIERAEPFPDRDLC----AQREV MUL_3630|M.ulcerans_Agy99 AVPFDQIAPILERTPEATRKLASRARRRIERAEPFPDRDLC----AQREV MLBr_01076|M.leprae_Br4923 IRVFRSVQN---YQPGTFEGWLHRITTNLFLDMVRRRARIR-----MDAL : : . * : : Mb3361c|M.bovis_AF2122/97 VGRLMAAMAAGDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRF Rv3328c|M.tuberculosis_H37Rv VGRLMAAMAAGDLDTVVSLLHPDVTFTGDSNGKAPTAVRAVRGSDKVVRF MSMEG_1692|M.smegmatis_MC2_155 LRAFVTAARSGDLDALEEILAEDVVSHTDGNGARNAAQIPVVGRTTVAKF TH_1144|M.thermoresistible__bu AEEFIHAATTGDLDRLLSLLAPGATFTTDHGGKAPAVARPVEGAKKVANL Mflv_1191|M.gilvum_PYR-GCK VEAFLAAAAGGDTATMVALMADDCVRVADPTLLPAHTPAVVIGDSAVADE Mvan_4710|M.vanbaalenii_PYR-1 VDAFLRAAGGGDIVRMVALMAPDAVRIVDPELLPTGTAAVVTGATAIAEE MAB_4733|M.abscessus_ATCC_1997 VEAFLSAARGGDIERLITLMAPDVIRTVDHTLIPSGAATLVRGAQAVAEE MAV_2475|M.avium_104 VQAFLAASRGGDIAALLQLLAADVLRTVDPVLVPADVPTALRGATRVAQE MMAR_3687|M.marinum_M VDAFFAAGRSGNFERLVSVLHPDVVLRGD--FGPNTPRFRAQGAATVAKL MUL_3630|M.ulcerans_Agy99 VDAFFAAGRSGNFERLVSVLHPDVVLRGD--FGPNTPRFRAQGAATVAKL MLBr_01076|M.leprae_Br4923 PDDYDRVPAD---EPNPEQIYHDSRLGPDLQAALDSLPPEFRAAVVLCDI . : . * . : Mb3361c|M.bovis_AF2122/97 ILGLVQRYGPGLFGANQLALVNGELGAYTAGLPGVDGYRAMAPRITAITV Rv3328c|M.tuberculosis_H37Rv ILGLVQRYGPGLFGANQLALVNGELGAYTAGLPGVDGYRAMAPRITAITV MSMEG_1692|M.smegmatis_MC2_155 VR-AFRNR---LWPGASLRWITANGHSAVLVVHDDS-----PAAFLTVAA TH_1144|M.thermoresistible__bu VMGFFRNRH--RVPDLRLEATNCNHAPAVLVYTGDH-----LEAVVLLEI Mflv_1191|M.gilvum_PYR-GCK TSLFIDRIR------VSAPMLVDGRTVHVIAPGGHE-----LAVIDITV- Mvan_4710|M.vanbaalenii_PYR-1 TRHFADRIR------ASVRMRVSGREAHIIAPGGHP-----LGIIDIRC- MAB_4733|M.abscessus_ATCC_1997 TRSFTDRIA------VAAILLIDGRVGAVIAPGGHP-----FALIRMDT- MAV_2475|M.avium_104 TRRFAGRAR------AGAVMLIDGTPGIVIAARGRA-----QILLMIGIG MMAR_3687|M.marinum_M ARSYAGPER------TVLNALVNGAAGAVISISEQA-----SAVMGFLV- MUL_3630|M.ulcerans_Agy99 ARSYAGPER------TVLNTLVNGAAGAVISISEQA-----SAVMRFLV- MLBr_01076|M.leprae_Br4923 EGLSYEEIG------ATLGVKLGTVRSRIHRGRQ---------------- Mb3361c|M.bovis_AF2122/97 RDGKVCALWDIANPDKFTGSPLKERRAQPTGRGRHHRN------------ Rv3328c|M.tuberculosis_H37Rv RDGKVCALWDIANPDKFTGSPLKERRAQPTGRGRHHRN------------ MSMEG_1692|M.smegmatis_MC2_155 SADGIHRLLWVLAPEKLAGIAQAQGR------------------------ TH_1144|M.thermoresistible__bu VDGAITNLYATRNPDKLAAVAAPRTITR---------------------- Mflv_1191|M.gilvum_PYR-GCK TDGRIARIEITRTHPSGRR------------------------------- Mvan_4710|M.vanbaalenii_PYR-1 SGGLITGITITPVCAADVLEPAAQPA------------------------ MAB_4733|M.abscessus_ATCC_1997 DGRLVTCIDIAPYTSGDAALSLIATAGSKVSYSPGESGRRIDPRGSGLPR MAV_2475|M.avium_104 ADDRIHTIDITGDPERIRRAALALPPAVRFRNITT--------------- MMAR_3687|M.marinum_M RNGRIAAIDVLADPQRIATLDISGLSGPGG-------------------- MUL_3630|M.ulcerans_Agy99 RNGRIAAIDVLADPQRIATLDISGLSGPGG-------------------- MLBr_01076|M.leprae_Br4923 ---ALRDYLLTAHPRDGATTDATHVKSA---------------------- : Mb3361c|M.bovis_AF2122/97 --- Rv3328c|M.tuberculosis_H37Rv --- MSMEG_1692|M.smegmatis_MC2_155 --- TH_1144|M.thermoresistible__bu --- Mflv_1191|M.gilvum_PYR-GCK --- Mvan_4710|M.vanbaalenii_PYR-1 --- MAB_4733|M.abscessus_ATCC_1997 VDH MAV_2475|M.avium_104 --- MMAR_3687|M.marinum_M --- MUL_3630|M.ulcerans_Agy99 --- MLBr_01076|M.leprae_Br4923 ---