For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. ulcerans Agy99 MUL_2998 (oxyR)

annotation: hydrogen peroxide-inducible genes activator, OxyR
coordinates: 3319276 - 3320220
length: 314

IGITDKSYQPTLAGLRAFVAVAEKQHFGSAANALGVSQSTLSQALAALEAGLDLHLVERSTRRVFLTTEG
RSLLPHAQAAVEAVEAFTTAAAGEADPLNGSIRFGIIPTVAPYVLPTVLAGLTRRLPTLTVRVIEDQTER
LLTALREGSLDTALIALPADYGGLTEIPIYEEDFVLALPPGHPMADRHGVPVAALSELPLLLLDEGHCLR
DQALDVCQNAGVRAEHADTRADSLATAVQCVNGGLGVTLIPQSAVSVEAARSRVGLTHFAAPTPGRRIGL
VYRASSGRDEAYRQLAAIMGESISNEQQVRLVN*
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. ulcerans Agy99MUL_2998oxyR-100% (314)hydrogen peroxide-inducible genes activator, OxyR
M. ulcerans Agy99MUL_2698-2e-1627.96% (304) LysR family transcriptional regulator
M. ulcerans Agy99MUL_4020-4e-1526.45% (242) LuxR family transcriptional regulator

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb2303c-4e-1528.44% (211) LysR family transcriptional regulator
M. gilvum PYR-GCKMflv_1346-1e-2533.60% (250) LysR family transcriptional regulator
M. tuberculosis H37RvRv2282c-4e-1528.44% (211) LysR family transcriptional regulator
M. leprae Br4923MLBr_02041oxyR1e-12771.29% (310) putative LysR-family transcriptional regulator
M. abscessus ATCC 19977MAB_4409-1e-10161.26% (302) hydrogen peroxide-inducible genes activator
M. marinum MMMAR_2756oxyR1e-17198.73% (314) hydrogen peroxide-inducible genes activator, OxyR
M. avium 104MAV_2838-1e-12975.65% (308) hydrogen peroxide-inducible genes activator
M. smegmatis MC2 155MSMEG_5654-3e-2831.00% (271) transcriptional regulator, LysR family protein
M. thermoresistible (build 8)TH_3504-2e-1230.00% (250) PUTATIVE putative transcriptional regulator
M. vanbaalenii PYR-1Mvan_1027-2e-2331.40% (258) LysR family transcriptional regulator

CLUSTAL 2.0.9 multiple sequence alignment


MUL_2998|M.ulcerans_Agy99           -----MIGITDKSYQPTLAGLRAFVAVAEKQHFGSAANALGVSQSTLSQA
MMAR_2756|M.marinum_M               MLATILIGMTDKSYQPTLAGLRAFVAVAEKQHFGSAANALGVSQSTLSQA
MLBr_02041|M.leprae_Br4923          --------MSDKSYQPTIAGLRAFVAVVEKGHFSAAASFLGVRQSTLSQA
MAV_2838|M.avium_104                --------MPDKTYQPTIAGLRAFVAVAEKRQFSGAATALGVSQSTLSQA
MAB_4409|M.abscessus_ATCC_1997      --------MSDRSYQPTVVGLRAFVAIARKRHFGSAAGELGVSQPSLSQA
Mflv_1346|M.gilvum_PYR-GCK          ---------------MKLRHLRYFRAVAEELHFGRAAQRLLIAQPPLSQQ
MSMEG_5654|M.smegmatis_MC2_155      -----------------MRHLRCFVVLAEELHFGRAAQRLHVAQPALSQL
Mvan_1027|M.vanbaalenii_PYR-1       --------------MFSLARLSCFVAVAEELHFGRAAERLHMTQPPLSRQ
Mb2303c|M.bovis_AF2122/97           --------MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRR
Rv2282c|M.tuberculosis_H37Rv        --------MPLSSRMPGLTCFEIFLAIAEAGSLGGAARELGLTQQAVSRR
TH_3504|M.thermoresistible__bu      ----------VPSPKIDLRRLAQFVAVAELGSFTRAAATLHLSQQALSSA
                                                     :  :  * .:..   :  **  * : * .:*  

MUL_2998|M.ulcerans_Agy99           LAALEAGLDLHLVERSTRRVFLTTEGRSLLPHAQAAVEAVEAFTTAAAGE
MMAR_2756|M.marinum_M               LAALEAGLDLHLVERSTRRVFLTTEGRSLLPHAQAAVEAVEAFTTAAAGE
MLBr_02041|M.leprae_Br4923          LAALESGLGVQLIERSTRRVFVTTQGRHLLPRAQAAIEAMDAFTAAAAGE
MAV_2838|M.avium_104                LAALEAGLGTQLVERSTRRVFLTPQGAELLPHAQAVVEAADAFTAAAAGS
MAB_4409|M.abscessus_ATCC_1997      LSMLEEGLGVRLVERNTRKVLLTPEGDALLEKAISALNAVDEFTSAASGV
Mflv_1346|M.gilvum_PYR-GCK          IRQLEREVGADLLRRTTRSVELTEAGRAFLERTVRILDAVDDAVDQARRI
MSMEG_5654|M.smegmatis_MC2_155      IQRVERELGAQLFLRTRRTVSLTEAGQTLLPEARRILRDADRVTQAVRAV
Mvan_1027|M.vanbaalenii_PYR-1       VQQLENELGVQLIDRTTRNVTLTPAGAAFLPDARRILQLAEGAAQTVKRI
Mb2303c|M.bovis_AF2122/97           LASMEAQIGVRLAIRTTRGSQLTPAGIVVAEWAARLLEVADEIDAGLGSL
Rv2282c|M.tuberculosis_H37Rv        LASMEAQIGVRLAIRTTRGSQLTPAGIVVAEWAARLLEVADEIDAGLGSL
TH_3504|M.thermoresistible__bu      VRALENDVGADLFTRDGRRISLTTAGRTLLAEGKPLLAAARTVAEHVRQT
                                    :  :*  :.  *  *  *   :*  *  .       :             

MUL_2998|M.ulcerans_Agy99           ADPLNGSIRFGIIPTVAPYVLPTVLAGLTRRLP----TLTVRVI-EDQTE
MMAR_2756|M.marinum_M               ADPLNGSIRFGIIPTVAPYVLPTVLAGLTRRLP----TLTVRVI-EDQTE
MLBr_02041|M.leprae_Br4923          SDPLRGGMRLGLIPTVAPYVLPTMLTGLTHRLP----TLTLRVV-EDQTE
MAV_2838|M.avium_104                ADPLRAGMRLGLIPTVAPYVLPTVLAGIAERRP----GLTLRVT-EDQTE
MAB_4409|M.abscessus_ATCC_1997      RDPFAQTLRLGLIPTVAPYVLPMVLSGLSREFP----EMSLRVT-EDQTH
Mflv_1346|M.gilvum_PYR-GCK          GTGAEGRLVVGCVGSATYSLLPRLVRELRAALP----AVDLRVRGEMLAP
MSMEG_5654|M.smegmatis_MC2_155      HRGETGSVTIGFVGSAADDVLPRLVAAHRRHHP----GVSIRLE-EGTTA
Mvan_1027|M.vanbaalenii_PYR-1       PAGDLGTVVVGFTAASAHAVLPRLLERARERLP----DVKLDLR-EMVTA
Mb2303c|M.bovis_AF2122/97           RTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMRRGGTVPEVILTATNSE
Rv2282c|M.tuberculosis_H37Rv        RTEGRQRIRVVASQTIAEQLMPHWMLSLRAADMRRGGTVPEVILTATNSE
TH_3504|M.thermoresistible__bu      EAAAQAHYVIGHTPALSGAEAYALIEPAVTAYP----STSFTLR-QLYPD
                                             .    : :       :                 :     . 

MUL_2998|M.ulcerans_Agy99           RLLTALREGSLDTALIALPADYGGLTEIPIYEEDFVLALPPGHPMADRH-
MMAR_2756|M.marinum_M               RLLTALREGSLDTALIALPADYGGLTEIPIYEEDFVLALPPGHPMADRH-
MLBr_02041|M.leprae_Br4923          HLLTALREGALDAAMIALPVETAGIAEIPIYDEDFVLALPPGHPLSGKR-
MAV_2838|M.avium_104                RLLAVLREGALDAALIALPAETAGVTAIPIYDEDFVLALPPGHPLAGKR-
MAB_4409|M.abscessus_ATCC_1997      RLLRSLSDGTLDVAVMALPVQTQGMAEIPMYREDFVLALPSGHPLAGSK-
Mflv_1346|M.gilvum_PYR-GCK          EQLAALHAKDIDLALMRPPVDDPALTAVSLRRDRLLVALPAGHRCADRD-
MSMEG_5654|M.smegmatis_MC2_155      QQLEWLRDQRITVGLGRTPIDDPAVSTVVLARESLVLAVPDSHALSGAE-
Mvan_1027|M.vanbaalenii_PYR-1       AQIEGLMTGELDLGMARPPLKRPGLVSRPLLHEQLLAALPEGHPLADMTR
Mb2303c|M.bovis_AF2122/97           HAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGHKWARRSR
Rv2282c|M.tuberculosis_H37Rv        HAIAAVRDGIADLGFIENPCPPTGLGSVVVARDELVVVVPPGHKWARRSR
TH_3504|M.thermoresistible__bu      ALTDAVFDGTVQLGLRRGVVPTPELATAVIGYHRVRVAFVDSHPLAARE-
                                         :       ..         :    :  . .  ..  .*  :    

MUL_2998|M.ulcerans_Agy99           GVPVAALSELPLLLLDEG--HCLRDQALDVCQN---AGVRAEHADTRADS
MMAR_2756|M.marinum_M               GVPVAALSELPLLLLDEG--HCLRDQALDVCQN---AGVRAELADTRAAS
MLBr_02041|M.leprae_Br4923          RVPTTALAQLPLLLLDEG--HCLRDQTLDICRK---SGVQAELANTRAAS
MAV_2838|M.avium_104                RVPATALADLPLLLLDEG--HCLRDQALDVCHK---AGVRAELANTRAAS
MAB_4409|M.abscessus_ATCC_1997      NVEPADLADMPLLLLDEG--HCLRDQALEVCQL---AGVRPDLGHTRAAS
Mflv_1346|M.gilvum_PYR-GCK          EVSLADLRDEDFISHAGGGRSRMSALLAALCAD---AGFSPRIRD-EVDE
MSMEG_5654|M.smegmatis_MC2_155      SAELAGLAEEPFIMFPRHLGPGLYDIIHSACAA---AGFTPSVVY-ETVR
Mvan_1027|M.vanbaalenii_PYR-1       ELTLIDLDGQDFVMYSPVQARYFNELLISTFTI---AGTTPRYVQ-YVTQ
Mb2303c|M.bovis_AF2122/97           VVSARELAQTPLVTREPN--SGIRDSLTAALRDTLGEDMQQAPPVLELSS
Rv2282c|M.tuberculosis_H37Rv        VVSARELAQTPLVTREPN--SGIRDSLTAALRDTLGEDMQQAPPVLELSS
TH_3504|M.thermoresistible__bu      SVDITELAREQVALWAPPGTSYYSDFLMGACRR---AGFEPDYVVSRVQG
                                          *    .                         .            

MUL_2998|M.ulcerans_Agy99           LATAVQCVNGGLGVTLIPQSAVSVEAARSRVGLTHFAAPTPGRRIGLVYR
MMAR_2756|M.marinum_M               LATAVQCVNGGLGVTLIPQSAVSVEAARSRVGLAHFAAPTPGRRIGLVYR
MLBr_02041|M.leprae_Br4923          LATAVQCVTGGLGVTLLPQSAAPVESVRSKLGLAQFAAPCPGRRIGLAFR
MAV_2838|M.avium_104                LATAVQCVTGGLGVTLIPQSAVPVEASRSRLGLAQFAAPRPGRRIGLVFR
MAB_4409|M.abscessus_ATCC_1997      LATAVQCVEGGLGVTLIPGTAVTAETASGGLATATFAAPVPGRRIGLVYR
Mflv_1346|M.gilvum_PYR-GCK          TSTLVTLVAGGLGVALVPEPTAALEI-GGVTYRPLAAKAGATIELLAVYR
MSMEG_5654|M.smegmatis_MC2_155      MQTIVGLVSGGLGVALVPESVRNLGR-KGVRYVHLADAP-PAIELSMMWR
Mvan_1027|M.vanbaalenii_PYR-1       VHTMLVLVRSGIGIALVPASAATLHP-EGVVFRTIGAFRERPVELDAVWR
Mb2303c|M.bovis_AF2122/97           AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWV
Rv2282c|M.tuberculosis_H37Rv        AAAVRAAVLAGAGPAAMSRLAIADDLAFGRLLAVDIPALNLRRQLRAIWV
TH_3504|M.thermoresistible__bu      AATVAAPLTTG-GIAFVTAAAGPTMN---GRVQVVDLTPPLLVPVQALWQ
                                      :    :  * * : :.  .                       :   : 

MUL_2998|M.ulcerans_Agy99           ASSGRDEAYRQLAAIMGESISNEQQVRLVN-
MMAR_2756|M.marinum_M               ASSGRDEAYRQLAAIMGESISNEQQVRLVN-
MLBr_02041|M.leprae_Br4923          SASGRSASYRQIAKIIGELISTEHHVRLVA-
MAV_2838|M.avium_104                SSSGRDDSYRELAGLIGELISSQHQVRLVK-
MAB_4409|M.abscessus_ATCC_1997      AISAREDAYRRLAELLTRLVSAVHPVTADAA
Mflv_1346|M.gilvum_PYR-GCK          SADASPLTAKVVDVLRATV------------
MSMEG_5654|M.smegmatis_MC2_155      NDCESPHLQPLRKTARHL-------------
Mvan_1027|M.vanbaalenii_PYR-1       GDSTNPALLRVLKDVLPQQEWTT--------
Mb2303c|M.bovis_AF2122/97           G--GRTPPAGAIRDLLSHITSRST-------
Rv2282c|M.tuberculosis_H37Rv        G--GRTPPAGAIRDLLSHITSRST-------
TH_3504|M.thermoresistible__bu      RHTLSAIRDRILEGLG---------------