For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. smegmatis MC2 155 MSMEG_2971 (-)

annotation: regulatory protein
coordinates: 3035748 - 3037301
length: 517

LSLSALLADPTLELTLLVPGSPGAVDREVLWLHNTELPDPSPYIRATELVLTNGLWRGTVDSTMFVDALL
RARAAGVVFGLTEQTPAAPADLVEACSSAELPLATVSIAVPFTAITQAAARIQSDARQAALSKLVRRGNA
LASSIARGGGAEGILDVLRRDHDLPLLVVDRLGRRLAGDIGDDEDVQVAADALNRHPPPLEVALPSGDTA
SVYLVEGAMGDVDAGLFCLRPLPSLKPLERDALDQAARYLSLEVTRQQALQAIESRFSSELLEMVLSGAA
RARDVAERLRAFGIDPSSALAVYTVVVGDGAVRPPGSTDEIEDFFNRHSIPAVVIPGSQDTVVVFGWHRD
MTALVGLAEDLVQTLTARFPADRAVIGVGDLAADASALREPLIRARETCHVLRRRTTEPKVGTYADIGTH
RMLLGLHDRSVLRRFADDILGPLDQHDEQYGTALVRTLRTFLANDGHWAKTATELYVHVNTLRNRIARIS
ELTGRDVARLEDRVDLFLALEADALG*
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. smegmatis MC2 155MSMEG_2971--100% (517)regulatory protein
M. smegmatis MC2 155MSMEG_1068-9e-2626.67% (495) regulatory protein
M. smegmatis MC2 155MSMEG_6688-2e-2424.50% (498) regulatory protein

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb2266-3e-0825.78% (256) hypothetical protein Mb2266
M. gilvum PYR-GCKMflv_0801-3e-3129.90% (495) transcriptional regulator, CdaR
M. tuberculosis H37RvRv2242-3e-0825.78% (256) hypothetical protein Rv2242
M. leprae Br4923MLBr_01052-6e-0722.22% (252) hypothetical protein MLBr_01052
M. abscessus ATCC 19977MAB_0825-3e-2525.00% (508) peptidase
M. marinum MMMAR_3335-2e-0625.00% (252) hypothetical protein MMAR_3335
M. avium 104MAV_1987-1e-0926.73% (303) putative DNA-binding protein
M. thermoresistible (build 8)TH_2137-2e-1123.80% (500) putative DNA-binding protein
M. ulcerans Agy99MUL_3245-4e-0625.28% (269) transcriptional regulator
M. vanbaalenii PYR-1Mvan_0042-9e-3130.23% (516) purine catabolism PurC domain-containing protein

CLUSTAL 2.0.9 multiple sequence alignment


Mb2266|M.bovis_AF2122/97            -----------------------------------------MNDNQLAPV
Rv2242|M.tuberculosis_H37Rv         -----------------------------------------MNDNQLAPV
MMAR_3335|M.marinum_M               -----------------------------------------MNDNQFSAI
Mflv_0801|M.gilvum_PYR-GCK          ----------------------------------------MSEDRAESAA
Mvan_0042|M.vanbaalenii_PYR-1       ----------------------------------------MSEVHAEPAA
MAV_1987|M.avium_104                ---------------MITLDRLVNVLGGYGVRLRWSSVPRSTELRSVVIH
TH_2137|M.thermoresistible__bu      ---------------VVTLDRLVNVLGSYGVRLQFCPVPRSTEVRSVALH
MLBr_01052|M.leprae_Br4923          ----------------------------------------------MAR-
MUL_3245|M.ulcerans_Agy99           ----------------------------------------------MASP
MSMEG_2971|M.smegmatis_MC2_155      ------MLSLSALLADPTLELTLLVPGSPGAVDREVLWLHNTELPDPSPY
MAB_0825|M.abscessus_ATCC_1997      MAEYRLTVPITVRDLTQRADLGLVLSAGEAGAARAIKWAHAIELNDPTPY
                                                                                      

Mb2266|M.bovis_AF2122/97            ARP---RSPLELLDTVPDSLLRRLKQYSG--RLATEAVSAMQERLPFFAD
Rv2242|M.tuberculosis_H37Rv         ARP---RSPLELLDTVPDSLLRRLKQYSG--RLATEAVSAMQERLPFFAD
MMAR_3335|M.marinum_M               ARLGSARSPLELLETVPDSLLRRLKQYSG--RLATEAVSAMQERLPFFAD
Mflv_0801|M.gilvum_PYR-GCK          PTLRDLLEAAQLSLSGPDPADRNLDREVS--WVHTTEMRDPSR---YLRG
Mvan_0042|M.vanbaalenii_PYR-1       PTLRDLATAG-LGLSVPDGTAQELDRPVS--WVHTTEMRDPSR---YLRG
MAV_1987|M.avium_104                ETPEDRPVVGDVLLAVGAGSLDEAVRWAA--SARAAVVVLRDDETPMTFD
TH_2137|M.thermoresistible__bu      ENAGGLRVTGDVLLAVGAESVAEAVRWAE--TAQAVVVLTRAG-PDASRS
MLBr_01052|M.leprae_Br4923          QHP--SPRVRELIREGARIALNPTQEWID--QLDRATFAANPAIANDPVL
MUL_3245|M.ulcerans_Agy99           SNPSLSPRMRELIRHTARIALNPTQQWLD--ELDRTTLAANPALSDDPAL
MSMEG_2971|M.smegmatis_MC2_155      IRATELVLTNGLWRGTVDSTMFVDALLRA--RAAGVVFGLTEQTPAAPAD
MAB_0825|M.abscessus_ATCC_1997      LFGGELVMTTGLTVGLSHAEQYEYAARLSGKNVAALAFDTGTTFSEVPPG
                                               :                         .            

Mb2266|M.bovis_AF2122/97            LEASQR----ASVALVVQTAVVNFVEWMH-----DPHSDVGYTAQAFELV
Rv2242|M.tuberculosis_H37Rv         LEASQR----ASVALVVQTAVVNFVEWMH-----DPHSDVGYTAQAFELV
MMAR_3335|M.marinum_M               LEASQR----ASVALVVQTAVVNFAEWMQ-----NPRSDVSYTAQAFELV
Mflv_0801|M.gilvum_PYR-GCK          GELVCT----VGISLHSAEDCSTFVDALAGAGAAGVCFGVGDGHDDVPAA
Mvan_0042|M.vanbaalenii_PYR-1       GELVCT----VGISLHTDQDCATFVDALSRARAAGVCFGVGDEHDAVPEA
MAV_1987|M.avium_104                GVTDVG----AVLVIDPTVSWSAVAAVVYGLVLEGRETESGRGPTDLFAL
TH_2137|M.thermoresistible__bu      CSDGAV----AVLTVEPEVSWSELAAVVYGLVLEGRETESGRGPTDLFAL
MLBr_01052|M.leprae_Br4923          AKVVRR----ASRAHLVHWATANLRDPGA-------PVPAHLGPEPLTMA
MUL_3245|M.ulcerans_Agy99           VEIISR----ANRANLIHFAVAILRDPGG-------PVPANFGPEPLRMA
MSMEG_2971|M.smegmatis_MC2_155      LVEACSSAELPLATVSIAVPFTAITQAAARIQSDARQAALSKLVRRGNAL
MAB_0825|M.abscessus_ATCC_1997      ILAAGDELGLPILQVPVSTPFIAITRAVIDELTADELRAVQRVVDQQDVL
                                                           .                          

Mb2266|M.bovis_AF2122/97            PQDLTRRIALRQTVDMVRVTMEFFE----------EVVPLLARSEEQLTA
Rv2242|M.tuberculosis_H37Rv         PQDLTRRIALRQTVDMVRVTMEFFE----------EVVPLLARSEEQLTA
MMAR_3335|M.marinum_M               PQDLTRRIALRHTVDMVRVTMEFFE----------EVVPLLARSEEQLTA
Mflv_0801|M.gilvum_PYR-GCK          LLDACRRAGLPVLVAPPSVPFSVIS-RFVAESRLGTEIAVARATNALVPE
Mvan_0042|M.vanbaalenii_PYR-1       LLAQCRLHGLPLLVAPPSVPFSVVS-RFVAEYWLGSEIAVARATNALVPE
MAV_1987|M.avium_104                ADSLADGIGNPVVIQDRHLGVLAYS-RLAQADPALVETVLQRQTPEPLRA
TH_2137|M.thermoresistible__bu      ADNLADAVGGPVTIEDRMSRVLAYSQRQQHADPARAQTILARQAPEPLRR
MLBr_01052|M.leprae_Br4923          RDLVRRGRDVLALDIYRVGQYTAWR-------RWMEIAFTLTSDPQELRE
MUL_3245|M.ulcerans_Agy99           QELLNRGLEALAADIYRIAHNVAWE-------RWTDIAFGLTSNPQELRD
MSMEG_2971|M.smegmatis_MC2_155      ASSIARGGGAEGILDVLRRDHDLPLLVVDRLGRRLAGDIGDDEDVQVAAD
MAB_0825|M.abscessus_ATCC_1997      VRATLRDGAPGVVSALSRSLAATVIVTATDGTLLAEAGHDAEHLAEITRG
                                                                                      

Mb2266|M.bovis_AF2122/97            LTVG----------------ILKYSRDLAFTAATAYADAAEARGTWDSRM
Rv2242|M.tuberculosis_H37Rv         LTVG----------------ILKYSRDLAFTAATAYADAAEARGTWDSRM
MMAR_3335|M.marinum_M               LTVG----------------ILKYSRDLAFTAASAYADAAEARGTWDSRM
Mflv_0801|M.gilvum_PYR-GCK          LLLS------LRRHDSPRRLLDAAGQVLGCYFLLEPEGAAKGDEAAVTVP
Mvan_0042|M.vanbaalenii_PYR-1       LLSS------LRRHDSPRQLLDSAGQLLGCYFLLEPEGGADSDDDAVTVP
MAV_1987|M.avium_104                LLEARGVFAHLQVADEPLFVAEDAERGLSGRMVVAVRAGAELIGSVWVAC
TH_2137|M.thermoresistible__bu      LFEQLGVSEHLAAGDDPLFIAARPGHDLTGRTVIAVRAGRELLGSVWVVT
MLBr_01052|M.leprae_Br4923          ILNV----------------SAQSINEYVAATLEAIATHMQLERDELTRS
MUL_3245|M.ulcerans_Agy99           LLDV----------------AFRSSNDFIDATIAGIPAQLPLEYDALTRE
MSMEG_2971|M.smegmatis_MC2_155      ALNR----------HPPPLEVALPSGDTASVYLVEGAMGDVDAGLFCLRP
MAB_0825|M.abscessus_ATCC_1997      AFPN----------HSRKHASRVVADRDGYCTIQTVRAGKAERGYLAVRS
                                                                                      

Mb2266|M.bovis_AF2122/97            EASVVDAVVRG------DTGPELLSR------------------------
Rv2242|M.tuberculosis_H37Rv         EASVVDAVVRG------DTGPELLSR------------------------
MMAR_3335|M.marinum_M               EASVVDAVVRG------DTGPELLSR------------------------
Mflv_0801|M.gilvum_PYR-GCK          VPGLGALVWMGRGDRPEPALLDLIAR--------------FVRAAQGERD
Mvan_0042|M.vanbaalenii_PYR-1       VPGLGTLVWVGRGDHPEPALLDLIAR--------------FVRAAQGERD
MAV_1987|M.avium_104                EAPLQPAALRALADGARTVALHLLRSRASADLERQVESELVIRLLEGTAD
TH_2137|M.thermoresistible__bu      PEPLDDGRRRALADGARTVALHLLRSRASADLERQVESDLVLRLLEGTSD
MLBr_01052|M.leprae_Br4923          THAERL-----------EVVDLILEG--------------------APVT
MUL_3245|M.ulcerans_Agy99           VSAQRR-----------KVVEQILGG--------------------APVN
MSMEG_2971|M.smegmatis_MC2_155      LPSLKPLERDALDQAARYLSLEVTRQQALQAIESRFSSELLEMVLSGAAR
MAB_0825|M.abscessus_ATCC_1997      EDALTAAQRLLVSHAMALIAIELEKP---------------ARVADAEQR
                                                          :                           

Mb2266|M.bovis_AF2122/97            AAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAA
Rv2242|M.tuberculosis_H37Rv         AAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAA
MMAR_3335|M.marinum_M               AAALNWDTTAPATVVVGTPASARDG--SDG-SERAIQDVRDAAAQHGRAA
Mflv_0801|M.gilvum_PYR-GCK          IEAALTRERVGQLLSLVERRMLLPDALSQLVQWPGF-AGEIACSAWPAGA
Mvan_0042|M.vanbaalenii_PYR-1       IEAALARERVGQLLSLVERRMLLPDALSQLLEWPGFSAGEIACSAWPAGA
MAV_1987|M.avium_104                AATVASRLDLAHNGLRVVAVQAFVGADRDAPLLLAFERATTGFGWSRPGR
TH_2137|M.thermoresistible__bu      AAGAAARLGLPQEALRIIAVRARSGVDRQGPLLLAFEHATTGFGWSRAGR
MLBr_01052|M.leprae_Br4923          QERAEARLGYRLGLTHTAAVIWSDDLDGDHGYLDQAAEAFSHVVESTQQL
MUL_3245|M.ulcerans_Agy99           RERAEAQLGYLLDRAHTAAIVWSDEPDGDHGQLDQAADAFCTALGCRAPL
MSMEG_2971|M.smegmatis_MC2_155      ARDVAERLRAFGIDPSSALAVYTVVVGDGAVRPPGSTDEIEDFFNRHSIP
MAB_0825|M.abscessus_ATCC_1997      LRGAVTRALLADPAAADRSVLRYFGFDPDTEVVVVLLCNVGSVLPGELHI
                                                                                      

Mb2266|M.bovis_AF2122/97            LTDVHGTWLVAIVS-------GQLSPTEKFLKDLLAAFADAPVVIG----
Rv2242|M.tuberculosis_H37Rv         LTDVHGTWLVAIVS-------GQLSPTEKFLKDLLAAFADAPVVIG----
MMAR_3335|M.marinum_M               LTDVHGTWLVAIVS-------GHLSPTDKVFKDLLEAFSDGPVVIG----
Mflv_0801|M.gilvum_PYR-GCK          GALLSISFPGALIG-------DAPDLCMMLTAG-AVEMPDDLALPTGHSA
Mvan_0042|M.vanbaalenii_PYR-1       GALVSMAFPDALIG-------DAPDLCLMLTVG-ALEVTDDLALPTGHSA
MAV_1987|M.avium_104                SALAGNSVYAVLPA-------DEASTARRWVGALRAALPERLTMIAGISG
TH_2137|M.thermoresistible__bu      SALAGDTVYTVLPA-------DHAATARRWVEGLQAALPSEVTVSAGISG
MLBr_01052|M.leprae_Br4923          IVVASAATRWVWLA-------DALALDVPEVQKALLNLSKARVAIG----
MUL_3245|M.ulcerans_Agy99           IVVTNSATRWVWVN-------DAATPVGDRIQQVLTYAPTVRLVVG----
MSMEG_2971|M.smegmatis_MC2_155      AVVIPGSQDTVVVFGWHRDMTALVGLAEDLVQTLTARFPADRAVIGVGDL
MAB_0825|M.abscessus_ATCC_1997      DRQLARGGPYLMAS-------VSGEIVVVLAAKNVGRASELHRSLGTALG
                                                                          .           

Mb2266|M.bovis_AF2122/97            -PTAPMLTAAHRSASEAISGMNAVAGWRGAP---------------RPVL
Rv2242|M.tuberculosis_H37Rv         -PTAPMLTAAHRSASEAISGMNAVAGWRGAP---------------RPVL
MMAR_3335|M.marinum_M               -PTAPMLTAAYHSASEAISGMNAVAGWRGAP---------------RPVL
Mflv_0801|M.gilvum_PYR-GCK          PVTLADLGSAIAQARIALTLAEHRGGRVGP---------------DQLST
Mvan_0042|M.vanbaalenii_PYR-1       PVPLTDIGSAIAQARIALTLAEHRGGRVGP---------------DQLST
MAV_1987|M.avium_104                VAEVGDLAAARQEADECLALHEMSPAAPPP--------------AYDESW
TH_2137|M.thermoresistible__bu      IADHTELPDARREADECLALHDALHDARPDTGSPDSDSDALAAVVYDESW
MLBr_01052|M.leprae_Br4923          -TSSAGIEGFRRSHLEALTAQRTLARLKSHQQ--------------VAFF
MUL_3245|M.ulcerans_Agy99           -NTRRGIEGFRRSHRDAQTTQRMLTRLGAPQR--------------TAHF
MSMEG_2971|M.smegmatis_MC2_155      AADASALREPLIRARETCHVLRRRTTEPKVG-------------TYADIG
MAB_0825|M.abscessus_ATCC_1997      RTICAGISRRVRLDEVPLGLHQARSVARAHPD------------GRIAEF
                                          :                                           

Mb2266|M.bovis_AF2122/97            ARELLPERALMGDAS--AIVALHTDVMRPLADAGPTLIETLDAYLDCGGA
Rv2242|M.tuberculosis_H37Rv         ARELLPERALMGDAS--AIVALHTDVMRPLADAGPTLIETLDAYLDCGGA
MMAR_3335|M.marinum_M               ARELLPERALMGDAS--AIVALHTDVMRPLADAGPTLIETLDAYLDCGGA
Mflv_0801|M.gilvum_PYR-GCK          LESLLEQLPLAQLAP--FRQLLIDPLTELDTSRGTQHVRTLRTFVACNGS
Mvan_0042|M.vanbaalenii_PYR-1       LESLLEQLPLAQLAP--FKQLLIAPLAELDSQRGTQHVRTLRVFLACNGS
MAV_1987|M.avium_104                DDILLQRLRAAARSGRAPTRGPVADLGRHDRANGTDYLATLRAWLQAQGD
TH_2137|M.thermoresistible__bu      HDVLLQRLRTAARAGRIPSRGPIAALHEHDLRHATQYVATLRSWLAAQGD
MLBr_01052|M.leprae_Br4923          ADVQLVSLITQNPED---AKEFITSTLGDFESASPALQQTLLTFINEQCN
MUL_3245|M.ulcerans_Agy99           ADTQMVELLTQDLEG---VDEFIECTLGEFQSASPVLHAILLTYINQQCN
MSMEG_2971|M.smegmatis_MC2_155      THRMLLGLHDRSVLRR-FADDILGPLDQHDEQYGTALVRTLRTFLANDGH
MAB_0825|M.abscessus_ATCC_1997      DELDIYGVLLGGRDRGELAVLAQSVAPLLGTGADTTLLDTLESFLACNGQ
                                        :                             .     *  ::     

Mb2266|M.bovis_AF2122/97            IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNY
Rv2242|M.tuberculosis_H37Rv         IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNY
MMAR_3335|M.marinum_M               IEACARKLFVHPNTIRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNY
Mflv_0801|M.gilvum_PYR-GCK          LSETAKELFLHTNTVRHRLGRIQEITGRDPLQHNDLTTFVIGMWAADRGE
Mvan_0042|M.vanbaalenii_PYR-1       LSETAKELFLHTNTVRHRLSRIQEITGRDPLQHNDLTAFVIGLWAADRAE
MAV_1987|M.avium_104                PAEAGRQLGVHENTVRYRLRKMAEITNLSLDDSKKRLAMMIELAAIHTD-
TH_2137|M.thermoresistible__bu      PAAAGAVLGVHENTVRYRLRKMTAVTQLDLQDPDKRLAMMIELAAIEGPP
MLBr_01052|M.leprae_Br4923          ASRAAKRLFTHRNTLLRRIESAEKLLPRPLDHTSVHIAVALEALQWRGDQ
MUL_3245|M.ulcerans_Agy99           AARTAKALYIHRNTLVHRLETAHRLLPQPVEANIVRIAVALEVLQWRSDR
MSMEG_2971|M.smegmatis_MC2_155      WAKTATELYVHVNTLRNRIARISELTGRDVARLEDRVDLFLALEADALG-
MAB_0825|M.abscessus_ATCC_1997      METAALNLGVHRHTMRNRIARIAALLDCDLHSADTRAALWIAIRARALLG
                                        .  *  * :*:  *:     .             . :         

Mb2266|M.bovis_AF2122/97            PTPH----------------------
Rv2242|M.tuberculosis_H37Rv         PTPH----------------------
MMAR_3335|M.marinum_M               PTPPSGAANNTITPVPLPVRRGTEGP
Mflv_0801|M.gilvum_PYR-GCK          --------------------------
Mvan_0042|M.vanbaalenii_PYR-1       RPAGL---------------------
MAV_1987|M.avium_104                --------------------------
TH_2137|M.thermoresistible__bu      ILSG----------------------
MLBr_01052|M.leprae_Br4923          TNTSGPRAGRNDGVPA----------
MUL_3245|M.ulcerans_Agy99           DDDS-LRAIT----------------
MSMEG_2971|M.smegmatis_MC2_155      --------------------------
MAB_0825|M.abscessus_ATCC_1997      --------------------------