For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. marinum M MMAR_4754 (-)

annotation: short-chain type dehydrogenase/reductase
coordinates: 5804903 - 5805754
length: 283

MTEQLGGRVAGKVAFITGAARGQGRSHAVRLAQEGADIIAVDVCKPIVENTTIPASTPEDLAETADLVKG
HNRRIFTAEADVRDYDALKAAVDAGVDELGRLDIIVANAGIGNGGATLDKTSEHDWQEMIDVNLSGVWKS
VKAAVPHLIAGGNGGSIVLTSSVGGMKAYPHCGNYVAAKHGVVGLMRSFAVELGQHMIRVNSVHPTHVRT
PMLHNEGTFKMFRPDLENPGPDDMAPICQLFHTLPIPWVEAEDISNAVLFLASDESRYITGVTLPVDAGG
CLK
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. marinum MMMAR_4754--100% (283)short-chain type dehydrogenase/reductase
M. marinum MMMAR_1965fabG8e-6548.06% (283) short chain dehydrogenase
M. marinum MMMAR_1016-2e-6446.01% (276) short-chain dehydrogenase/reductase

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb2771-2e-6550.55% (273) 3-ketoacyl-(acyl-carrier-protein) reductase
M. gilvum PYR-GCKMflv_2430-1e-12578.85% (279) short-chain dehydrogenase/reductase SDR
M. tuberculosis H37RvRv2750-2e-6550.55% (273) 3-ketoacyl-(acyl-carrier-protein) reductase
M. leprae Br4923MLBr_01807fabG14e-2432.25% (276) 3-oxoacyl-
M. abscessus ATCC 19977MAB_0072c-1e-7754.95% (273) putative short chain dehydrogenase/reductase
M. avium 104MAV_0896-1e-14386.79% (280) carveol dehydrogenase ((+)-trans-carveol dehydrogenase)
M. smegmatis MC2 155MSMEG_4849-1e-13683.27% (281) carveol dehydrogenase
M. thermoresistible (build 8)TH_3237-1e-12777.78% (279) PUTATIVE short-chain dehydrogenase/reductase SDR
M. ulcerans Agy99MUL_3392fabG2e-6448.06% (283) 3-ketoacyl-(acyl-carrier-protein) reductase
M. vanbaalenii PYR-1Mvan_5168-1e-12274.91% (279) short-chain dehydrogenase/reductase SDR

CLUSTAL 2.0.9 multiple sequence alignment


Mb2771|M.bovis_AF2122/97            ---MIDRPLEGKVAFITGAARGLGRAHAVR---LAADGANIIAVDICEQI
Rv2750|M.tuberculosis_H37Rv         ---MIDRPLEGKVAFITGAARGLGRAHAVR---LAADGANIIAVDICEQI
MUL_3392|M.ulcerans_Agy99           MSRPLDGPLSGRVAFITGAARGQGRAHALR---LARDGADVIAVDLCDQI
MAV_0896|M.avium_104                ----MTGRVEGKVAFVTGAARGQGRSHAVR---LAQEGADIIAVDICKPI
MSMEG_4849|M.smegmatis_MC2_155      ----MSGRVEGKVAFVTGAARGQGRSHALR---LAQEGADIIAIDICGPI
MMAR_4754|M.marinum_M               MTEQLGGRVAGKVAFITGAARGQGRSHAVR---LAQEGADIIAVDVCKPI
Mflv_2430|M.gilvum_PYR-GCK          ----MAGRVEGKVAFITGAARGQGRAHAVR---LAEEGADIIAVDICKQI
TH_3237|M.thermoresistible__bu      ----MAGRLEGKVAFITGAARGQGRAHAVR---MAQEGADIIAVDICRQI
Mvan_5168|M.vanbaalenii_PYR-1       ----MGGRVEGKVAFITGAARGQGRSHAVR---LAEEGADIIAIDVCGPI
MAB_0072c|M.abscessus_ATCC_199      ----MTGRLTGKVALVTGAARGIGRAQAVR---FAQEGADIIALDICAPV
MLBr_01807|M.leprae_Br4923          ---------MTDAAAKVSAAPGRGKPAFVSRSILVTGGNRGIGLAVARRL
                                                .*  ..** * *:.  :    :.  *   *.: :.  :

Mb2771|M.bovis_AF2122/97            ASV----PYPLSTADDLAATVELVEDAGGGIVARQGDVRDRASLSVALQA
Rv2750|M.tuberculosis_H37Rv         ASV----PYPLSTADDLAATVELVEDAGGGIVARQGDVRDRASLSVALQA
MUL_3392|M.ulcerans_Agy99           ASV----PYPLGTAEELATTVKLVEDTGARIVASQADVRDREALAAALQA
MAV_0896|M.avium_104                RAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRDYDALKAAVDS
MSMEG_4849|M.smegmatis_MC2_155      RPG-AETAIPASTSDDLAETANLVKGLDRRVVTAEVDVRDAAAIKAAVDS
MMAR_4754|M.marinum_M               VEN---TTIPASTPEDLAETADLVKGHNRRIFTAEADVRDYDALKAAVDA
Mflv_2430|M.gilvum_PYR-GCK          DSV----LIPLSTPEDLAETADLVKNAGGRIHTAEVDVRDYDALKAAVDA
TH_3237|M.thermoresistible__bu      DSV----QIPLASPEDLAETADLVKGLNRRIYTAEVDVRDFDALKAAVDT
Mvan_5168|M.vanbaalenii_PYR-1       STH---TDIPAATPDDLAQTVDLVKGIGRRVVAAEVDVRDYAAVKAAVDS
MAB_0072c|M.abscessus_ATCC_199      HTT----ITPPATRADLDKTSELVESAGRRVIPGVVDVRNLRDVQTFTQD
MLBr_01807|M.leprae_Br4923          VAD--------GHRVAVTHRASVVP---DWFFGVECDVTDNDAIGAAFKA
                                               .    :    .:*      .     ** :   : .  . 

Mb2771|M.bovis_AF2122/97            GLDEFGRLDIVVANAGIAMMQ-----AGDDGWRDVIDVNLTGVFHTVQVA
Rv2750|M.tuberculosis_H37Rv         GLDEFGRLDIVVANAGIAMMQ-----AGDDGWRDVIDVNLTGVFHTVQVA
MUL_3392|M.ulcerans_Agy99           GIDELGQVDIVVANAGIAPMQ-----SGDDGWRDVIDVNLSGAYYTVEVA
MAV_0896|M.avium_104                GVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAG
MSMEG_4849|M.smegmatis_MC2_155      GVEQLGRLDIIVANAGIGNGGDTLDQTSEEDWDEMIDINLSGVWKSVKAG
MMAR_4754|M.marinum_M               GVDELGRLDIIVANAGIGNGGATLDKTSEHDWQEMIDVNLSGVWKSVKAA
Mflv_2430|M.gilvum_PYR-GCK          GVEEFGRLDIIVANAGIGNGGQTLDKTDEPDWDDMIGVNLSGVWKTVKAG
TH_3237|M.thermoresistible__bu      GVEQLGRLDIIVANAGIGNGGETLDKTSEGDWTDMIDVNLAGVWKTVKAG
Mvan_5168|M.vanbaalenii_PYR-1       GVEQLGRLDIVVANAGIGNGGQTLDHTSEEDWNDMIDVNLSGVWKSVKAA
MAB_0072c|M.abscessus_ATCC_199      AVTEFGGLDIVCATAGITSRRMLLDMP-ESDWQTMLDVNLTGVWHTTRAA
MLBr_01807|M.leprae_Br4923          VEEHQGPVEVLVANAGITSDMLIMR-MSEEQFQKVIDVNLTGVFRVAKLA
                                       . * :::: *.***           :  :  ::.:**:*.:  .. .

Mb2771|M.bovis_AF2122/97            IPTLIEQGTGGSIVLISSAAGLVGIGSSDPGSLGYAAAKHGVVGLMRAYA
Rv2750|M.tuberculosis_H37Rv         IPTLIEQGTGGSIVLISSAAGLVGIGSSDPGSLGYAAAKHGVVGLMRAYA
MUL_3392|M.ulcerans_Agy99           IPTMIEQGRGGSIVLISSAAGLVGISSADAGAIGYVASKHALVGLMRVYA
MAV_0896|M.avium_104                VPHMIAGGRGGSIILTSSVGGLKAYPHTG----HYVAAKHGVVGLMRAFG
MSMEG_4849|M.smegmatis_MC2_155      VPHIVAGGRGGSIVLTSSVGGLKAYPHCG----NYVAAKHGVVGLMRGFA
MMAR_4754|M.marinum_M               VPHLIAGGNGGSIVLTSSVGGMKAYPHCG----NYVAAKHGVVGLMRSFA
Mflv_2430|M.gilvum_PYR-GCK          VPHILAGGNGGSIILTSSVGGLKAYPHTG----HYVAAKHGVVGLMRTFA
TH_3237|M.thermoresistible__bu      VPHILAGGRGGSIILTSSVGGLKAYPHTG----HYVAAKHGVVGLMRTFA
Mvan_5168|M.vanbaalenii_PYR-1       VPHLLSGGRGGSIILTSSVGGLKPYAHTG----HYIAAKHGVIGLMRTFA
MAB_0072c|M.abscessus_ATCC_199      TPHLIARG-GGAMVLVSSIAGLRGLVGVS----HYVAAKHGVVGLMRSLA
MLBr_01807|M.leprae_Br4923          SRNMIKQRFGRYIFMG-SVVGLSGVPGQA----NYAASKSGLIGMARSLA
                                       ::    *  :.:  *  *:            * *:* .::*: *  .

Mb2771|M.bovis_AF2122/97            NHLAPQNIRVNSVHPCGVDTPMINNEFFQQWLT-------TADMDAPHNL
Rv2750|M.tuberculosis_H37Rv         NHLAPQNIRVNSVHPCGVDTPMINNEFFQQWLT-------TADMDAPHNL
MUL_3392|M.ulcerans_Agy99           NLLAPHSIRVNSLHPSGVDPPMINNEFIRHWLAD-----LVAETGSGPGA
MAV_0896|M.avium_104                VELGQHMIRVNSVHPTHVKTPMLHNEGTFKMFRPDLENPGPDDMAPICQM
MSMEG_4849|M.smegmatis_MC2_155      VELGQHNIRVNTVHPTHVATPMLHNEGTFKMFRPDLENPGPDDMAPICQM
MMAR_4754|M.marinum_M               VELGQHMIRVNSVHPTHVRTPMLHNEGTFKMFRPDLENPGPDDMAPICQL
Mflv_2430|M.gilvum_PYR-GCK          VELGAQNIRVNSVHPTNVNTPLFMNEPTMKLFRPDLENPGPDDMKVVGQL
TH_3237|M.thermoresistible__bu      VELGQHNIRVNSVHPTNVNTPLFMNEPTMKLFRPDLENPGPEDLKVVAQM
Mvan_5168|M.vanbaalenii_PYR-1       VELGQHSIRVNAVCPTNVNTPLFMNEGTMKLFRPDLENPGPDDLAVAAQF
MAB_0072c|M.abscessus_ATCC_199      IELAPHKIRVNTVHPTNVDTPMIQNEFVRTLFRPDLEQPTREDFAAAAKT
MLBr_01807|M.leprae_Br4923          RELGSRSITANVVAPGFIDTEMTR----------------AMDSKYQEAA
                                      *. : * .* : *  : . :                    :       

Mb2771|M.bovis_AF2122/97            GNALPVELV-QPTDIANAVAWLASEEARYVTGVTLPVDAGFVNKR
Rv2750|M.tuberculosis_H37Rv         GNALPVELV-QPTDIANAVAWLASEEARYVTGVTLPVDAGFVNKR
MUL_3392|M.ulcerans_Agy99           GNALPVQIL-QADDIAGALAWLVSDEARYITGVALPVDAGCVNKR
MAV_0896|M.avium_104                FHTLPIPWV-EPIDISNAVLFFASDEARYITGVTLPIDAGSCLK-
MSMEG_4849|M.smegmatis_MC2_155      FHTLPIPWV-EPIDISNAVLFLASDEARYITGVTLPVDAGSCLK-
MMAR_4754|M.marinum_M               FHTLPIPWV-EAEDISNAVLFLASDESRYITGVTLPVDAGGCLK-
Mflv_2430|M.gilvum_PYR-GCK          MHTLPIGWV-EPEDIANAVLFLASDEARFITGVTLPVDGGSCLK-
TH_3237|M.thermoresistible__bu      MHTLPIGWV-EPEDIANAVLFLASDEARYITGVTLPVDGGSCLK-
Mvan_5168|M.vanbaalenii_PYR-1       MHVLPVGWV-EPVDISNAVLFLASDEARYITGLPVTVDAGSMLK-
MAB_0072c|M.abscessus_ATCC_199      MNLLDLPWV-EPLDIANASLFLASDEARYITSVSLPVDAGSTQR-
MLBr_01807|M.leprae_Br4923          LQAIPLGRIGAVEEIAGAVSFLASEDAGYISGAVIPVDGGLGMGH
                                     : : :  :    :*:.*  ::.*::: :::.  :.:*.*