For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VAAQTGSLDGRVAFVTGAARAQGRSHAVRLAREGADIIAMDICGPVSETITYAPATAADLSETIRAVESE GRKVLARQADVRDSAALQQLVADGVEEFGRLDVVVANAGVLGWGRLWELTDEQWDTVIGVNLSGTWRTLR AAVPAMIEAGNGGSIIVVSSSAGLKATPGNGHYAASKHGLVALTNTLAIELGEYDIRVNSIHPYSVETPM IEPDVMMQVFGEHPRFLHSFPPMPLQYKGLMTSEEVSDVVVWLAGDGSGTLSGAQIPVDKGALKY
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. marinum M | MMAR_1016 | - | - | 100% (275) | short-chain dehydrogenase/reductase |
M. marinum M | MMAR_4754 | - | 2e-64 | 46.01% (276) | short-chain type dehydrogenase/reductase |
M. marinum M | MMAR_1965 | fabG | 2e-56 | 42.39% (276) | short chain dehydrogenase |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb0706 | fabG | 1e-132 | 81.82% (275) | 3-ketoacyl-(acyl-carrier-protein) reductase |
M. gilvum PYR-GCK | Mflv_5072 | fabG | 1e-113 | 69.31% (277) | 3-ketoacyl-(acyl-carrier-protein) reductase |
M. tuberculosis H37Rv | Rv0687 | fabG | 1e-132 | 81.82% (275) | 3-ketoacyl-(acyl-carrier-protein) reductase |
M. leprae Br4923 | MLBr_01740 | - | 3e-30 | 35.32% (218) | short chain dehydrogenase |
M. abscessus ATCC 19977 | MAB_3844c | - | 3e-99 | 62.31% (268) | putative short-chain dehydrogenase/reductase |
M. avium 104 | MAV_4486 | - | 1e-129 | 80.00% (275) | short chain dehydrogenase |
M. smegmatis MC2 155 | MSMEG_1410 | fabG | 1e-118 | 73.65% (277) | 3-ketoacyl-(acyl-carrier-protein) reductase |
M. thermoresistible (build 8) | TH_3434 | - | 1e-118 | 74.73% (273) | PUTATIVE short-chain dehydrogenase/reductase SDR |
M. ulcerans Agy99 | MUL_0768 | - | 1e-138 | 98.39% (248) | 3-ketoacyl-(acyl-carrier-protein) reductase |
M. vanbaalenii PYR-1 | Mvan_1286 | fabG | 1e-116 | 69.86% (282) | 3-ketoacyl-(acyl-carrier-protein) reductase |
CLUSTAL 2.0.9 multiple sequence alignment Mflv_5072|M.gilvum_PYR-GCK MPMSSGTPLEGRVALITGAARGQGRAHAIRLAADGADIVALDVCKPVSES Mvan_1286|M.vanbaalenii_PYR-1 MPMASAAPLEGRVALITGAARGQGRAHAVRLAAEGADIIAIDVCGPVSES MSMEG_1410|M.smegmatis_MC2_155 -MATVGKTLEGRVAFVTGAARGQGRAHAVRLADEGADIIAIDVCAPVDDT TH_3434|M.thermoresistible__bu ------------VAFITGAARGQGRAHAIRLAEEGADIIAIDVCGPVSDT MMAR_1016|M.marinum_M -MAAQTGSLDGRVAFVTGAARAQGRSHAVRLAREGADIIAMDICGPVSET MUL_0768|M.ulcerans_Agy99 ----------------------------MRLAREGADIIAMDICGPVSES Mb0706|M.bovis_AF2122/97 -MSARGGSLHGRVAFVTGAARAQGRSHAVRLAREGADIVALDICAPVSGS Rv0687|M.tuberculosis_H37Rv -MSARGGSLHGRVAFVTGAARAQGRSHAVRLAREGADIVALDICAPVSGS MAV_4486|M.avium_104 -MSGQAGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSAS MAB_3844c|M.abscessus_ATCC_199 ---MADQPLAGKVAFVTGAARGQGRQHAVRLAQAGADVVAIDACAPVSEY MLBr_01740|M.leprae_Br4923 -MVKTAQYFVGKRCFVTGAASGIGRATALRLAAYGAELYLTDR------- :*** **:: * Mflv_5072|M.gilvum_PYR-GCK VTYPMPTSEDLAETVRLVEETGRKVLAR-EVDIRDLAAQQQLVADAVEQF Mvan_1286|M.vanbaalenii_PYR-1 ITYSMPTSEDLAETVRLVEATGRKVLAR-EVDIRDLAAQQQVVADGVEQF MSMEG_1410|M.smegmatis_MC2_155 ITYPSATPEDLAETVAAVEATGRKVLAR-EVDIRDLAAQQQVVADGVEQF TH_3434|M.thermoresistible__bu ITYPPATEDDLAETVRAVEATGRKVLAR-TADIRDLAAQQQIVAEGMERF MMAR_1016|M.marinum_M ITYAPATAADLSETIRAVESEGRKVLAR-QADVRDSAALQQLVADGVEEF MUL_0768|M.ulcerans_Agy99 ITYAPATAADLSETIRAVESEGRKVLAR-QADVRDSAALQQLVADGVEEF Mb0706|M.bovis_AF2122/97 VTYPPATSEDLGETVRAVEAEGRKVLAR-EVDIRDDAELRRLVADGVEQF Rv0687|M.tuberculosis_H37Rv VTYPPATSEDLGETVRAVEAEGRKVLAR-EVDIRDDAELRRLVADGVEQF MAV_4486|M.avium_104 VTYAPASPEDLDETARLVEDQGRKALTR-VLDVRDDAALRELVADGMEQF MAB_3844c|M.abscessus_ATCC_199 AGYEAATPEDLKETVRLVEAAGRKIIAE-QADVRNGAALQSVVEEAVAQF MLBr_01740|M.leprae_Br4923 ------HCDGLAQTVSEARALGAQVPEYRALDISDYDEVAAFGADIHARH .* :* .. * : *: : . : .. Mflv_5072|M.gilvum_PYR-GCK GRLDIVVANAGVLSWGRIWEMSEDQWDTVVDVNLNGTWRTIRAAVPAMIE Mvan_1286|M.vanbaalenii_PYR-1 GRLDIVVANAGVLSWGRIWEMSEEQWDTVVDVNLNGTWRTVRAAVPAMIE MSMEG_1410|M.smegmatis_MC2_155 GRLDIVVANAGVLSWGRIFEMSPEQWDTVVDVNLNGTWRTIRAAVPAMIE TH_3434|M.thermoresistible__bu GRLDIVVANAGVLSWGRLWEMSEEQWDTVIDVNLNGTWRTIRAVVPAMIE MMAR_1016|M.marinum_M GRLDVVVANAGVLGWGRLWELTDEQWDTVIGVNLSGTWRTLRAAVPAMIE MUL_0768|M.ulcerans_Agy99 GRLDVMVANAGVFGWGRLWELTDEQWDTVIGVNLSGTWRTLRAAVPAMIE Mb0706|M.bovis_AF2122/97 GRLDIVVANAGVLGWGRLWELTDEQWETVIGVNLTGTWRTLRATVPAMID Rv0687|M.tuberculosis_H37Rv GRLDIVVANAGVLGWGRLWELTDEQWETVIGVNLTGTWRTLRATVPAMID MAV_4486|M.avium_104 GRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIE MAB_3844c|M.abscessus_ATCC_199 GHIDILIANAGVLSWGRLWEMSDQQWEDIIDTNLTGTWKTVKAVVPTMIE MLBr_01740|M.leprae_Br4923 PSMDIVMNIAGVSVWGTVDRLTHDQWSNVVAINLMGPIHIIETFVPAILA :*::: *** ** : .:: :**. :: ** *. : :.: **::: Mflv_5072|M.gilvum_PYR-GCK AGNGGSIIIVSSSAGLKATPGNAHYAASKHGLVALTNALALEAGEFGIRV Mvan_1286|M.vanbaalenii_PYR-1 AGNGGSIVIVSSSAGLKATPGNAHYAASKHGLVALTNALAIEAGEFGIRV MSMEG_1410|M.smegmatis_MC2_155 AGNGGSIIIVSSSAGLKATPGNGHYAASKHGLVALTNSLALEVGEYGIRV TH_3434|M.thermoresistible__bu AGNGGSIIIVSSSAGLKATPGNGHYAASKHGLVALTNALAIEVGEYGIRV MMAR_1016|M.marinum_M AGNGGSIIVVSSSAGLKATPGNGHYAASKHGLVALTNTLAIELGEYDIRV MUL_0768|M.ulcerans_Agy99 AGNGGSIIVVSSSAGLKATPGNGHYAASKHGLVALTNTLAIELGEYDIGV Mb0706|M.bovis_AF2122/97 AGNGGSIVVVSSSAGLKATPGNGHYAASKHALVALTNTLAIELGEFGIRV Rv0687|M.tuberculosis_H37Rv AGNGGSIVVVSSSAGLKATPGNGHYAASKHALVALTNTLAIELGEFGIRV MAV_4486|M.avium_104 AGNGGSIVVVSSSAGLKATPGNGHYSASKHGLTALTNTLAIELGEYGIRV MAB_3844c|M.abscessus_ATCC_199 AGNGGSIVIVSSVSGLKGTPGNGAYVASKFGLTGLTKSLTIELAEYGIRV MLBr_01740|M.leprae_Br4923 AGRGGHLVNVSSAAGLVALPWHAAYSASKYGLRGLSEVLRFDLARYRIGV **.** :: *** :** . * :. * ***..* .*:: * :: ..: * * Mflv_5072|M.gilvum_PYR-GCK NSIHPYSIDTPMIEKDAMMEIFSKYPTFLHSFAPMPFKPVARDGKPGLQE Mvan_1286|M.vanbaalenii_PYR-1 NSIHPYSIDTPMIEKDAMMEIFSKYPTYLHSFAPMPFKPVAREGKPGLQE MSMEG_1410|M.smegmatis_MC2_155 NSIHPYSIDTPMIEPEAMAQVFAKYPNYLHSFAPMPYQPVG-EGAEGLST TH_3434|M.thermoresistible__bu NSIHPYSIDTPMIERDAMMAVFAKHPNYLHSFAPMPLHPVNREGDGGRQE MMAR_1016|M.marinum_M NSIHPYSVETPMIEPDVMMQVFGEHPRFLHSFPPMPLQYKG--------- MUL_0768|M.ulcerans_Agy99 NSIHPYSVETPMIEPDVMMQVFGEHPRFLHSFPPMPLQYKG--------- Mb0706|M.bovis_AF2122/97 NSIHPYSVDTPMIEPEAMIQTFAKHPGYVHSFPPMPLQPKG--------- Rv0687|M.tuberculosis_H37Rv NSIHPYSVDTPMIEPEAMIQTFAKHPGYVHSFPPMPLQPKG--------- MAV_4486|M.avium_104 NSIHPYSVETPMIEPEAMMEIFARHPSFVHSFPPMPVQPNG--------- MAB_3844c|M.abscessus_ATCC_199 NSIHPYGVTTPMITGDAMMKILAEHPNYLPSIAPMPLSPTK--------- MLBr_01740|M.leprae_Br4923 SVVVPGAVRTPLVDTIEIAGVDRQDPRFSRWVDRFRGHAVSAERAAEKIL . : * .: **:: : . * : . : Mflv_5072|M.gilvum_PYR-GCK FMTVE-----------------------------EVSDVVAWLAGDSSAT Mvan_1286|M.vanbaalenii_PYR-1 FMTVE-----------------------------EVADVVAWLAGDASST MSMEG_1410|M.smegmatis_MC2_155 FMTPE-----------------------------EVSDVVAWLAGDGSAT TH_3434|M.thermoresistible__bu FMTPE-----------------------------EVADVVAWLAGDGSAT MMAR_1016|M.marinum_M LMTSE-----------------------------EVSDVVVWLAGDGSGT MUL_0768|M.ulcerans_Agy99 LMTSE-----------------------------EVSDVVVWLAGDGSGT Mb0706|M.bovis_AF2122/97 FMTPD-----------------------------EISDVVVWLAGDGSGA Rv0687|M.tuberculosis_H37Rv FMTPD-----------------------------EISDVVVWLAGDGSGA MAV_4486|M.avium_104 FMTAD-----------------------------EVADVVAWLAGDGSGT MAB_3844c|M.abscessus_ATCC_199 MLEPD-----------------------------EISDVVLWLASDASGT MLBr_01740|M.leprae_Br4923 AGVAKNRYLIYTSHDIRVLYGFKRLAWWPYGVVMKQVNVVFTRALRPSPA . : :** * * : Mflv_5072|M.gilvum_PYR-GCK ISGSQIAVDRGTMKY----------- Mvan_1286|M.vanbaalenii_PYR-1 ISGSQIAVDRGTMKY----------- MSMEG_1410|M.smegmatis_MC2_155 LSGSQIAVDRGVMKY----------- TH_3434|M.thermoresistible__bu LSGSQIAVDRGVMKY----------- MMAR_1016|M.marinum_M LSGAQIPVDKGALKY----------- MUL_0768|M.ulcerans_Agy99 LSGAQIPVDKGALKY----------- Mb0706|M.bovis_AF2122/97 LSGNQIPVDKGALKY----------- Rv0687|M.tuberculosis_H37Rv LSGNQIPVDKGALKY----------- MAV_4486|M.avium_104 LTGTQIPVDKGALKY----------- MAB_3844c|M.abscessus_ATCC_199 LAGAQVPVDKGHLTY----------- MLBr_01740|M.leprae_Br4923 TMRCVEPIKVGVYSQPRSGEGGKSGN .:. * .