For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
NPSTALKPRRLVAGLALATVTVATGGCTVANSGGGGYDPDTLRIVLQQEPPTLEPCESSLTSTGIVVRSN ITEPLLERDANTGELQPLLSTGWEQTSPNEWTFTLRDGVTFSDGAPFTSADAAFSIDRAVNSDLQCNVDG YVFGDEKLGLQTPNPSTVVVSTTKPDPILPLRISFVEMVPRTTSTTEKVREPIGTGPYAIERWDYGQKLV LARNATYWGQAPSFAKAEYQWRSEGSVRAAMITNDEADIATGLGPEDGAGDLGVPFQNNETTALRMQATE PPLDDIRVRQAINYAVNRTGIVKALFRDLGQPAAQLIPSGVVGYNAELQLWPHDLDKARALIEEARADGV PVDREIRLIGRTAQFPKITETIEVLQSEFTEIGLNVKIEMMDTAAQLEYQLRPFPPDTGPYLLMIMHGNQ AGDAAFTLDQYMLSDGPQAAYGTPEFDARIRTAEALTGQARQDAFAALFAEEPQEIVQMAYIAHMKGILG KSERIDYTPNPATGDEMLLAAMTPAGNDRTDQS*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. vanbaalenii PYR-1 | Mvan_1024 | - | - | 100% (524) | extracellular solute-binding protein |
M. vanbaalenii PYR-1 | Mvan_3773 | - | 4e-36 | 27.52% (476) | extracellular solute-binding protein |
M. vanbaalenii PYR-1 | Mvan_0438 | - | 3e-19 | 25.36% (414) | extracellular solute-binding protein |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3690c | dppA | 7e-09 | 21.96% (378) | periplasmic dipeptide-binding lipoprotein DppA |
M. gilvum PYR-GCK | Mflv_2761 | - | 1e-32 | 26.23% (488) | extracellular solute-binding protein |
M. tuberculosis H37Rv | Rv3666c | dppA | 7e-09 | 21.96% (378) | periplasmic dipeptide-binding lipoprotein DppA |
M. leprae Br4923 | MLBr_01121 | - | 1e-05 | 24.38% (283) | putative extracellular solute-binding dependent transport |
M. abscessus ATCC 19977 | MAB_0426 | - | 2e-15 | 25.65% (382) | peptide ABC transporter DppA |
M. marinum M | MMAR_4139 | oppA | 1e-07 | 22.55% (510) | periplasmic oligopeptide-binding lipoprotein OppA |
M. avium 104 | MAV_3421 | - | 5e-11 | 23.42% (269) | extracellular solute-binding protein, family protein 5 |
M. smegmatis MC2 155 | MSMEG_6124 | - | 0.0 | 75.10% (514) | putative ABC transporter periplasmic oligopeptide-binding |
M. thermoresistible (build 8) | TH_4152 | - | 2e-32 | 26.09% (460) | PUTATIVE extracellular solute-binding protein, family 5 |
M. ulcerans Agy99 | MUL_4002 | oppA | 1e-06 | 22.74% (497) | periplasmic oligopeptide-binding lipoprotein OppA |
CLUSTAL 2.0.9 multiple sequence alignment Mvan_1024|M.vanbaalenii_PYR-1 -----------------------------------------MNPSTALKP MSMEG_6124|M.smegmatis_MC2_155 -----------------------------------------MR--RAPHP Mflv_2761|M.gilvum_PYR-GCK -----------------------------------------MARTAVGAA TH_4152|M.thermoresistible__bu -------------------------------------------------V Mb3690c|M.bovis_AF2122/97 -----------------------------------------MVRRMRAAL Rv3666c|M.tuberculosis_H37Rv -----------------------------------------MVRQMRAAL MAB_0426|M.abscessus_ATCC_1997 ------------------------------------------MRLRRLAI MMAR_4139|M.marinum_M MLTNADRHDGVQPGPGARSRRPTRPWARRRIRCAGAALLTVTLLLAGCSA MUL_4002|M.ulcerans_Agy99 -------------------------------------MLTVTLLLAGCSA MLBr_01121|M.leprae_Br4923 ---------------------------MIMLSRIVAALLVVGLILTGCSA MAV_3421|M.avium_104 ------------------------------------------MAKVASRT Mvan_1024|M.vanbaalenii_PYR-1 RRLVAGLALATVTVATGGCTVANSGGGGYDPDTLRIVLQQEPPTLEPCES MSMEG_6124|M.smegmatis_MC2_155 LALIAGLAIITSGAAAG-CTVANTAHGGYDPDTLRIVLPQEPPTLEPCES Mflv_2761|M.gilvum_PYR-GCK VLAVCALVLSLTGCNTG----ERVDLGDGAGGALIAAIAGEPDQLDPHKT TH_4152|M.thermoresistible__bu SNLVAVLLIAATGCAPG----QRVDLGDLSG-NLIAAIAGEPDQLDPHKT Mb3690c|M.bovis_AF2122/97 AALATGLLVLAPVAGCG--------GGVLSPDVVLVNGGEPPNPLIPTGT Rv3666c|M.tuberculosis_H37Rv AALATGLLVLAPVAGCG--------GGVLSPDVVLVNGGEPPNPLIPTGT MAB_0426|M.abscessus_ATCC_1997 VLLVGIVAVLPAGCGDL--------VTPAPPGYFSMYITEPEHTLVPGNT MMAR_4139|M.marinum_M STQLPAATSGSTAVGSSSDINPQDPATLEDGGDLRLSLTDFPPNFNILHI MUL_4002|M.ulcerans_Agy99 STQLPAATSGSTAVGSSSDINPQDPATLEDGGDLRLSLTDFPPNFNILHI MLBr_01121|M.leprae_Br4923 SNRLVPSAASNAALGKTSDINPQDPATLKDGGNLRLALTDFPANFNILHI MAV_3421|M.avium_104 ATLGAMLCVLAAGCSGHR---HTASTGPTGPPVRGGTLTYSDVQFVTDTM : Mvan_1024|M.vanbaalenii_PYR-1 SLTSTGIVVRSNITEP---LLERDANTGELQPLLSTGWEQTS-PNEWTFT MSMEG_6124|M.smegmatis_MC2_155 SLTSTGVVVRSNITEP---LIERDPQTGDLLPLLATGWHQTS-PREWTFD Mflv_2761|M.gilvum_PYR-GCK TAYFS-FEVLENVFDT---LVEPD-QDLQMKPALAESWEVSPDQLTWTFR TH_4152|M.thermoresistible__bu SAYFS-FQVLENVFDT---LVEPD-EDLRMRPALAESWQVSADQRVWTFR Mb3690c|M.bovis_AF2122/97 NDSNG-GRIIDRLFAG---LMSYD--AVGKPSLEVAQSIESADNVNYRIT Rv3666c|M.tuberculosis_H37Rv NDSNG-GRIIDRLFAG---LMSYD--AVGKPSLEVAQSIESADNVNYRIT MAB_0426|M.abscessus_ATCC_1997 TENQG-GRILRSLFTA---LVEFNNETAAVEYTGVAESITSHDNVNWTIK MMAR_4139|M.marinum_M DGNSAEVAAMVKATLPRAFIIGPDGSTTVDHDYFTSVELTKTNPQVITYT MUL_4002|M.ulcerans_Agy99 DGNSAEVAAMVKATLPRAFIIGPDGSTTVDHDYFTSVELTKTNPQVITYT MLBr_01121|M.leprae_Br4923 DGNNAEVTSMMKATMPRAFIIGTDGSTTVDTNYFTSIKLTSTSPQVVTYT MAV_3421|M.avium_104 AANYSANNLMFQLLDR---VVYVDPKTDAVRGWLAKTFSRNQNATRYTFT :: : . Mvan_1024|M.vanbaalenii_PYR-1 LRDGVTFSDGAPFTSADAAFSIDR---AVNSDLQC--------------- MSMEG_6124|M.smegmatis_MC2_155 IRPGVTFSDGTPFTAADAAFSIDR---AVNSDLQC--------------- Mflv_2761|M.gilvum_PYR-GCK LRPGVTFHDGTPLAAEDVVFSYRR---IIDEQLAN--------------- TH_4152|M.thermoresistible__bu LRPGVTFHDGSPLTADDVVFSYRR---IIDEHLTN--------------- Mb3690c|M.bovis_AF2122/97 VKPGWKFTDGSPVTAHSFVDAWNYGALSTNAQLQQHFFSPIEGFDDVAGA Rv3666c|M.tuberculosis_H37Rv VKPGWKFTDGSPVTAHSFVDAWNYGALSTNAQLQQHFFSPIEGFDDVAGA MAB_0426|M.abscessus_ATCC_1997 LKPGWTFHNGEPVTAQSYVDAWNYTALSTNAQGSSSFLANVDGFDDLQGD MMAR_4139|M.marinum_M INPKAFWSDGTPITWRDIASQIHATSGADNRFEIAS-------------- MUL_4002|M.ulcerans_Agy99 INPKAFWSDGTPVTWRDIASQIHATSGADNRFEIAS-------------- MLBr_01121|M.leprae_Br4923 INPKAVWSDGTPITWRDIDRQIHANSGKNKAFEIAG-------------- MAV_3421|M.avium_104 IRDGVSFSDHTPLTAEVVKANFDQLGKGDPAKKMP--------------- :. : : *.: Mvan_1024|M.vanbaalenii_PYR-1 -NVDGYVFGDEKLGLQTPNPSTVVVSTTKPDPILPLRIS------FVEMV MSMEG_6124|M.smegmatis_MC2_155 -NVDGYVFGDDPLKVSAPDDHTVVVGTAKPDPILPLRIS------FIEIV Mflv_2761|M.gilvum_PYR-GCK -SDK----FSSVQAVEAPDPSTVVIRVDRPTPNMLTNLGGF---KGMAIV TH_4152|M.thermoresistible__bu -VDR----LSAVTEVTAVDPLTVRITVARPTPNLLTNLGGF---KGMAIV Mb3690c|M.bovis_AF2122/97 PGDKSR---TTMSGLRVVNDLEFTVRLKAPTIDFTLRLGHS---SFYPLP Rv3666c|M.tuberculosis_H37Rv PGDKSR---TTMSGLRVVNDLEFTVRLKAPTIDFTLRLGHS---SFYPLP MAB_0426|M.abscessus_ATCC_1997 PAHKIAPRATQMRGLHVVDDVTFTVRLNTPFAIYPMTLGYT---AFLPLP MMAR_4139|M.marinum_M ----SGGSDRVASVTPGVDDRQAIVTFAKPYAEWRGMFAG----NGMLLP MUL_4002|M.ulcerans_Agy99 ----SGGSDRVASVIPGVDDRQAMVTFAKPYAEWRGMFAG----NGMLLP MLBr_01121|M.leprae_Br4923 ----TNGCERVASIRPGANDRQAIVTFAQPYAEWRGMFAG----NGMLLP MAV_3421|M.avium_104 -----AFADFVGYDHSEVSGNVVTVFLDRPNTNFYKVLSYSRAGIRAPAT . : * :. Mvan_1024|M.vanbaalenii_PYR-1 PRTTSTTEKVR-EPIGT-----GPYAIER------WDYGQKLVLARNATY MSMEG_6124|M.smegmatis_MC2_155 PHTTSVTEKVR-EPIGT-----GPYAIER------WEYGQKLVLHRNERY Mflv_2761|M.gilvum_PYR-GCK SRANVESGRIATHPVGT-----GPFSFLG------QKSGDSISLRANPDY TH_4152|M.thermoresistible__bu QRANVETGRIATHPVGT-----GPFEFRG------ARSGDSITLVANDDH Mb3690c|M.bovis_AF2122/97 DSAFRDMAAFGRNPIGN-----GPYKLADGPAGPAWEHNVRIDLVPNPDY Rv3666c|M.tuberculosis_H37Rv DSAFRDMAAFGRNPIGN-----GPYKLADGPAGPAWEHNVRIDLVPNPDY MAB_0426|M.abscessus_ATCC_1997 KAFFRDPVKFGVHPIGN-----GPFKADG-----DWVRGVGFTLSRYDQY MMAR_4139|M.marinum_M SSMTATPEAFNKGQLAGPGPSAGPFIVTS-----LDRSAQRIVLTRNPKW MUL_4002|M.ulcerans_Agy99 SSMTATPEAFNKGQLTGPGPSAGPFIVTS-----LDRSAQRIVLIRNPKW MLBr_01121|M.leprae_Br4923 ATMTATPEAFNKGQLDRPGPSAGPFIVSS-----LDRTTQRIVLTHNPKW MAV_3421|M.avium_104 LALDYQRQAKVENVIGS-----GPFVYQS------QIPDQQVVLTRRPDY : **: . * Mvan_1024|M.vanbaalenii_PYR-1 WGQ--------APSFAKAEYQWRSEGSVRAAMITNDEADIAT-GLGPE-- MSMEG_6124|M.smegmatis_MC2_155 WGA--------APDFTRAEYQWRSEGSVRAAMVVNDEADIGT-SVGPE-- Mflv_2761|M.gilvum_PYR-GCK WAG--------PPGVAGVTFRFIPEPSTALSALQAGEVDWTD-SVPPQRV TH_4152|M.thermoresistible__bu WAG--------PPRLNGVTFRFISEPATALSALQAGEIDWTD-AIPTQRV Mb3690c|M.bovis_AF2122/97 HGNR-------KPRNKGLRFEFYANLDTAYADLLSGNLDVLD-TIPPSAL Rv3666c|M.tuberculosis_H37Rv HGNR-------KPRNKGLRFEFYANLDTAYADLLSGNLDVLD-TIPPSAL MAB_0426|M.abscessus_ATCC_1997 AGEK-------KAKAKGLIWRVYTEGLTAYTDMQAGALDIQL-DLPDAAY MMAR_4139|M.marinum_M WGK--------KPRLDSITYLVLDD-AARIPALQNFTIDATG-IGSLDQL MUL_4002|M.ulcerans_Agy99 WGK--------KPRLHSITYLVLDD-AARIPALQNFTIDATG-IGSLDQL MLBr_01121|M.leprae_Br4923 WGT--------PPRLDSITYLVLDD-AARLPALQNNTIDATG-VGTLDQL MAV_3421|M.avium_104 AWPPSSWPNQGPAYVDKVVFRVIGEPGLRAGAVQSHQVDVARGIQPTDEP . : : : * Mvan_1024|M.vanbaalenii_PYR-1 ----DGAGDLGVPFQNNETTALRMQATEPPLDDIR---VRQAINYAVNRT MSMEG_6124|M.smegmatis_MC2_155 ----DGAGDLGVPFPNNETTALRLTATEPPLDDLR---VRQAINYSVNRT Mflv_2761|M.gilvum_PYR-GCK SQLRDDESLQLTVTPSNDYWYLALNQARAPWNDVR---VRQAIAYAIDRD TH_4152|M.thermoresistible__bu TQLRNDDSLTLAVTPSNDYWYLALNHARAPWHDLR---VRRAIAFGIDRE Mb3690c|M.bovis_AF2122/97 TVYQRDLGDHATSGPAAINQTLDTPLRLPHFGGEEGRLRRLALSAAINRP Rv3666c|M.tuberculosis_H37Rv TVYQRDLGDHATSGPAAINQTLDTPLRLPHFGGEEGRLRRLALSAAINRP MAB_0426|M.abscessus_ATCC_1997 ENAKAEFGSAYLERPRPDITSLGFPMYDPRYRDVR---VRQAISMAIDRE MMAR_4139|M.marinum_M TIAERTKGISIRRAPAPSWSHFTLNGAPGAVLADP--ALRLAVCKGIDRR MUL_4002|M.ulcerans_Agy99 TIAERTKGISIRRAPAPSWSHFTLNGAPGAVLADP--ALRLAVCKGIDRR MLBr_01121|M.leprae_Br4923 TTAQRTNGISIRRTPAPRWSHFTFNGAVGSILADQ--GLRLAVSKGIDRR MAV_3421|M.avium_104 ALKQGGLQVIPVAAPAETANLVGFRINNQVVDDVR---VRRALQLGIDRR . * *: .::* Mvan_1024|M.vanbaalenii_PYR-1 GIVKALFRDLGQPAAQLIPSGVVGYNAELQLWPHD----LDKARALIEEA MSMEG_6124|M.smegmatis_MC2_155 GIVKALYRGLGEPAAQLIPEGVVGHNEDLELWPYD----PDRARELIDEA Mflv_2761|M.gilvum_PYR-GCK AIVQATSYGTAAANQLAIPEGNP-WFTPYDRYREDGEEGLETARDLLRQA TH_4152|M.thermoresistible__bu AIVTATGYGTATANQLAIPPGDF-WYTHYDRYRYD----LDRARALLDEA Mb3690c|M.bovis_AF2122/97 QICQQIFAGTRSPARDFTARSLPGFDPNLPGNEVLDYD-PQRARRLWAQA Rv3666c|M.tuberculosis_H37Rv QICQQIFAGTRSPARDFTARSLPGFDPNLPGNEVLDYD-PQRARRLWAQA MAB_0426|M.abscessus_ATCC_1997 AITQVIFSGTRTPATSYGSAVVYGYRKGACG-KLCELH-VDEANKLLDEA MMAR_4139|M.marinum_M TIAKVALYGLTNDPAPLNNHVFVAGQEGYQDNS--SPYDPEQAKRELDAL MUL_4002|M.ulcerans_Agy99 TIAKVALYGLTNDPAPLNNHVFVAGQEGYQDNS--SPYDPEQAKRELDAL MLBr_01121|M.leprae_Br4923 TIAKVVQYGLANNPEPLNNHVYVDGQEGYQDNSGVVGYDPEQAQHELDAL MAV_3421|M.avium_104 AVVDTVLSDSYRAADSVLGHDDPLFADVSADIGYQ----PQRAAGLLDAA : . : * Mvan_1024|M.vanbaalenii_PYR-1 RADGV-------PVDREIRLIGRTAQFPKITETIEVLQSEFTEIGLNVKI MSMEG_6124|M.smegmatis_MC2_155 RADGV-------PVDREIRLIGRNSLFPKVTETVEVIQNELSKIGLNVKI Mflv_2761|M.gilvum_PYR-GCK NAT-----------PGDLDMLVTT-EYPETVTAAQIVADNLAPLGITVNI TH_4152|M.thermoresistible__bu RAAGV-------DPPRRLDMLVTG-DYPQTVTAAQIIADNVAPLGITVDI Mb3690c|M.bovis_AF2122/97 DAIS----------PWSGRYAIAYNADAGHRDWVDAVANSIKNV-LGIDA Rv3666c|M.tuberculosis_H37Rv DAIS----------PWSGRYAIAYNADAGHRDWVDAVANSIKNV-LGIDA MAB_0426|M.abscessus_ATCC_1997 HFDR----------NKPIELWYSS-SSTGALSWVQAIGNQLQSN-LKVPY MMAR_4139|M.marinum_M GWKLNGK--FREKDGHQLVVRLLFYEAQSSRQFAQVAQYSLAQIGVKLEL MUL_4002|M.ulcerans_Agy99 GWKLNGK--FREKDGHQLVVRLLFYEAQSSRQFAQVAQYSLAQIGVKLEL MLBr_01121|M.leprae_Br4923 GWKLNGQ--FREKDGRQLVIRYLFYDAQGSREFAQLAQHSLAQIGVKLEL MAV_3421|M.avium_104 GWKPGGDGVREKDGKKLVLTLAASNQSVVFRPAFEFIEQQWRELGVVLQN : . : : Mvan_1024|M.vanbaalenii_PYR-1 EMMDTAAQLEYQLRPFPPDTGPYLLMIMHGNQAGDAAFTLDQYML----- MSMEG_6124|M.smegmatis_MC2_155 EMMDTAAQLQYQLRPFPPNAGAFIALIQHGNQAGDAAFSVDQYMR----- Mflv_2761|M.gilvum_PYR-GCK RTVDFATWLDEQNS----GNFDMLMMGWLGNIDPDDFYYAQHHTD----- TH_4152|M.thermoresistible__bu RTVDFATWLDEQNN----GTFDMLMMGWLGNIDPDDYYYAQHHTD----- Mb3690c|M.bovis_AF2122/97 VAAPQPTFAGFRTQITNRAIDSAFRAGWQGDYPSMIGFLAPLFT----AG Rv3666c|M.tuberculosis_H37Rv VAAPQPTFAGFRTQITNRAIDSAFRAGWRGDYPSMIEFLAPLFT----AG MAB_0426|M.abscessus_ATCC_1997 LLKSLP-WSQFLPLQDGKGMTGPFRSGWVMDYPSIYNFLESLYGTVALPP MMAR_4139|M.marinum_M QSRSGSGFFSNYVN---VGAFDIALFGWVGDAFPLSSLTQIYMSD----- MUL_4002|M.ulcerans_Agy99 QSRSGSGFFSNYVN---VGAFDIALFGWVGDAFPLSSLTQIYMSD----- MLBr_01121|M.leprae_Br4923 QAKAGSGFFTNYVN---VGAFDIVQFGWVGDAFPLSALTQIYQSD----- MAV_3421|M.avium_104 RAGDTTFFNASSSQ---------SSTPLFGTRIQYNIGLGLLFGR----- . Mvan_1024|M.vanbaalenii_PYR-1 SDGPQAAYGTPEFDARIRTAEALTGQARQDAFAALFAEEPQEIVQMAYIA MSMEG_6124|M.smegmatis_MC2_155 SDGAQSAYGTPEFDARIEAAGELTGEQRQQAYAQIFADEPDEIAQFAYIA Mflv_2761|M.gilvum_PYR-GCK GTSNAQKFSNPEVDRLLDAGRVETDEQTRKAGYARAATLIADEVSYIYLY TH_4152|M.thermoresistible__bu GASNAQRFSDPEVDRLLDAARAEPDRDRRKALYDRAATLIADRVSYLFLY Mb3690c|M.bovis_AF2122/97 AGSNDVGYINPEFDAALAAAEAAPTLTESHELVNDAQRILFHDMPVVPLW Rv3666c|M.tuberculosis_H37Rv AGSNDVGYINPEFDAALAAAEAAPTLTESHELVNDAQRILFHDMPVVPLW MAB_0426|M.abscessus_ATCC_1997 NGSNYVFYSNPAFDELLRQGNNEPTVELATKAYQKAEDLLFKDLPAAPLF MMAR_4139|M.marinum_M GESNFGKIGSPQIDAAIERTLQELDPAKALALANEVDKLIWAEGFSLPLT MUL_4002|M.ulcerans_Agy99 GESNFGKIGSPQIDAAIERTLQELDPAKALALANQVDKLIWAEGFSLPLT MLBr_01121|M.leprae_Br4923 GESNFGKISSPAVDAAIERTLAELDPAKARALANEVDKLLWAEGFSLPLT MAV_3421|M.avium_104 PKSNLTFAQNDALLALSEEELRQTDPTRLKDVVAREQRRIIDDQLALVLW . . : Mvan_1024|M.vanbaalenii_PYR-1 HMKGILGKSERID-YTPNPATGDEMLLAAMTPAGNDRTDQS MSMEG_6124|M.smegmatis_MC2_155 HMTGVLAKSPRVD-YQPNSATGDEMRLSQMTFAADDTVEH- Mflv_2761|M.gilvum_PYR-GCK NPSVIQAWNPALSGYEARRDGAVRFRSASLDSDGNV----- TH_4152|M.thermoresistible__bu NPAVVQAWSPDLSGYRARRDAAVRFRDASLNRDGLNRDGPP Mb3690c|M.bovis_AF2122/97 DYISVVGWSSQVSNVTVTWNGLPDYENIVKA---------- Rv3666c|M.tuberculosis_H37Rv DYISVVGWSSQVSNVTVTWNGLPDYENIVKA---------- MAB_0426|M.abscessus_ATCC_1997 YEVNQAVHSKRVRNVKIGIQDCIEYADVEVVQ--------- MMAR_4139|M.marinum_M QSPGTIAVRSTLANFGARGLADLDYTAIGFMRS-------- MUL_4002|M.ulcerans_Agy99 QSPGTIAVRSTLANFGARGLADLDYTAIGFMRS-------- MLBr_01121|M.leprae_Br4923 QSPGDVAVRSTLANFGAAGFGDLNYTAIGFMQN-------- MAV_3421|M.avium_104 DEVQVHAAAPNVHVEFTRYTEPLLQSAWKA----------- :