For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VLADKGKPLQLNVVAQHAQVGVGTVYRHFPTPEALVDALAADQFAFLIEEVDTAPRTLQGLRSFLKATLM VFVQDHTFASALINPVTDEVQTQRGRLLDGIRTLVKGTVAADRLALLALAPSDIMLLLCGVGFAVRHTPN RDDPALLDRYLKALLDGILPRHAGCGTPAAGH
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_3960 | - | - | 100% (172) | transcriptional regulator |
| M. smegmatis MC2 155 | MSMEG_3961 | - | 3e-09 | 29.59% (169) | transcriptional regulator |
| M. smegmatis MC2 155 | MSMEG_3807 | - | 4e-09 | 28.65% (171) | TetR-type regulator |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0068c | - | 2e-06 | 45.83% (48) | TetR family transcriptional regulator |
| M. gilvum PYR-GCK | Mflv_0142 | - | 2e-09 | 28.66% (164) | TetR family transcriptional regulator |
| M. tuberculosis H37Rv | Rv0067c | - | 2e-06 | 45.83% (48) | TetR family transcriptional regulator |
| M. leprae Br4923 | MLBr_00316 | - | 3e-07 | 43.75% (48) | putative TetR/AcrR-family transcriptional regulator |
| M. abscessus ATCC 19977 | MAB_1873c | - | 2e-08 | 32.52% (163) | TetR family transcriptional regulator |
| M. marinum M | - | - | - | - | - |
| M. avium 104 | MAV_4593 | - | 2e-05 | 29.05% (148) | TetR family protein transcriptional regulator |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_1492 | - | 2e-10 | 27.38% (168) | TetR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
Mb0068c|M.bovis_AF2122/97 -----------MAPTDRRVRADAARNRARVLEVAYQTFAADGLSVPVDEI
Rv0067c|M.tuberculosis_H37Rv -----------MAPTDRRVRADAARNRARVLEVAYQTFAADGLSVPVDEI
MLBr_00316|M.leprae_Br4923 MSVPRSGLSVQMAQPARPLRADAARNRARILGVAYEAFATEGLSVPIDEI
Mflv_0142|M.gilvum_PYR-GCK --------------MTRPLRADAARNRARVLEVAYDTFAAEGLTVPIDEI
MAB_1873c|M.abscessus_ATCC_199 ----------MSEAELRTPRADAARNRDQLLAAATRAFASADSEPSMRAI
MAV_4593|M.avium_104 ----------------MVGRSDARRNRQRLLEAATAAFTAHGASVSLESI
Mvan_1492|M.vanbaalenii_PYR-1 -----------MTPPDRPVRADAARNRALLLAAAEEEFAERGPSASVADI
MSMEG_3960|M.smegmatis_MC2_155 ------------------------------------MLADKGKPLQLNVV
:: . : :
Mb0068c|M.bovis_AF2122/97 ARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKGHALLKSKHPGDAL
Rv0067c|M.tuberculosis_H37Rv ARRAGVGAGTVYRHFPTKEALFQAVIADRMHRIIDKGHALLKSKHPGDAL
MLBr_00316|M.leprae_Br4923 ARRAGVGAGTVYRHFPTKEALCAAVIGDRMPHLVDDGYVLLKSAGPGEAL
Mflv_0142|M.gilvum_PYR-GCK ARRAGVGAGTVYRHFPTKEALVVAVAEDRVRRIAERARTLLAVEGPGQAL
MAB_1873c|M.abscessus_ATCC_199 ARQAGVGIATLYRHFPTRESLVDAVYRDQVVRLTTGAHELLGQLPPATAM
MAV_4593|M.avium_104 ARDAGVGIGTLYRHFPNREALVEAVYRAELAEVAAAAAQLLQRHPPKAAL
Mvan_1492|M.vanbaalenii_PYR-1 ARRAGVAKGTVFRHFPTKEDLIAAIVSEHIAVLAAAARRLADSPDPGAAL
MSMEG_3960|M.smegmatis_MC2_155 AQHAQVGVGTVYRHFPTPEALVDALAADQFAFLIEEVDTAPRTLQGLRSF
*: * *. .*::****. * * *: .. : ::
Mb0068c|M.bovis_AF2122/97 FAFLRSMVLQWGATDRGLVEALAGVG-IEISSAAPEAEADFLDLLTDLLR
Rv0067c|M.tuberculosis_H37Rv FAFLRSMVLQWGATDRGLVEALAGVG-IEISSAAPEAEADFLDLLTDLLR
MLBr_00316|M.leprae_Br4923 FTYLRSLVLHWGATDRGLVDALAGAGGIDILGVAPDAEDAFLTILSDLLY
Mflv_0142|M.gilvum_PYR-GCK FVFFRDMVRS-AAVDHGLVDALMNQG-LDLEAVAPGVEAAFLSTLGDLLS
MAB_1873c|M.abscessus_ATCC_199 RRWM-DSFGDWIATKNGMLDTLHTMIESGHIGHA-ETRAELLKAVTTILD
MAV_4593|M.avium_104 RRWM-DRYATFVATKRGMAESLQAIFESGALVPS-QTRDSIVGAVETLLR
Mvan_1492|M.vanbaalenii_PYR-1 LEFLTIAADQRQRHDLTFLQSASDGD-----PRVTEVRDALHANLETLVD
MSMEG_3960|M.smegmatis_MC2_155 LKATLMVFVQDHTFASALINPVTDEV--------QTQRGRLLDGIRTLVK
: :. . : : ::
Mb0068c|M.bovis_AF2122/97 AAQRAG-TVRPDVDVLEVKTLLVG-CQAMQSYNA----ELAAKVTDVALD
Rv0067c|M.tuberculosis_H37Rv AAQRAG-TVRPDVDVLEVKTLLVG-CQAMQSYNA----ELAAKVTDVALD
MLBr_00316|M.leprae_Br4923 AAQYAG-TARTDVGVREVKSILVG-CQAMEAYNS----ALAERVTDVVVD
Mflv_0142|M.gilvum_PYR-GCK AAQGAG-TVRPDVDVAVVKALLVV-CKVPQVFDS----EVTERVTRVIED
MAB_1873c|M.abscessus_ATCC_199 AGHAAG-DLRADVTAEDIAASLIG-IFTVAPRPEQE--AQADRLLNLLMD
MAV_4593|M.avium_104 AGADDA-SLRADVQADDVVSSLIG-IFLVSGSPE-----QTGRMLDLLVA
Mvan_1492|M.vanbaalenii_PYR-1 RARTSG-AIRADITEADVFLMMCAPIHIVENLPAPAP-LLWQRYLAIIFD
MSMEG_3960|M.smegmatis_MC2_155 GTVAADRLALLALAPSDIMLLLCGVGFAVRHTPNRDDPALLDRYLKALLD
: : : :
Mb0068c|M.bovis_AF2122/97 GLRANRK-----------
Rv0067c|M.tuberculosis_H37Rv GLRANRK-----------
MLBr_00316|M.leprae_Br4923 GLRAAR------------
Mflv_0142|M.gilvum_PYR-GCK GLRPLR------------
MAB_1873c|M.abscessus_ATCC_199 GLRPAARQAHS-------
MAV_4593|M.avium_104 GVTR--------------
Mvan_1492|M.vanbaalenii_PYR-1 GLRPDGAHPLPQPAPAAP
MSMEG_3960|M.smegmatis_MC2_155 GILPRHAGCGTPAAGH--
*: