For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
SVLKVANLSRSFGGIHAVNDVSFDVEKAEIVGIIGPNGSGKSTLFNLLTGAIKPGGGSIELFGRNTTRLA PYKIARAGLGRTFQIPALFTNMTVRENLWTAAVQFDWDNARADADAVLEQLELTRVADDLANTLSGGQQR LVEMGRVLMQKPKVALLDEVAAGVHPRLRQIMLDAIRTLRDSGTTFLIIEHDMELAQDICDRIIVMDAGK IVAQGTFDEISHDPHVMEAYLGVPTNE*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_1218 | - | - | 100% (238) | ABC-type transport system ATP-binding protein II |
| M. smegmatis MC2 155 | MSMEG_6877 | - | 3e-45 | 42.04% (245) | branched-chain amino acid transport system ATP-binding protein |
| M. smegmatis MC2 155 | MSMEG_3250 | - | 6e-44 | 37.15% (253) | ABC transporter, ATP-binding protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2961 | drrA | 2e-26 | 32.09% (215) | daunorubicin-DIM-transport ATP-binding protein ABC |
| M. gilvum PYR-GCK | Mflv_3571 | - | 2e-44 | 37.55% (253) | ABC transporter related |
| M. tuberculosis H37Rv | Rv2936 | drrA | 2e-26 | 32.09% (215) | daunorubicin-DIM-transport ATP-binding protein ABC |
| M. leprae Br4923 | MLBr_00590 | - | 2e-28 | 30.32% (221) | putative ABC transporter ATP-binding protein |
| M. abscessus ATCC 19977 | MAB_2623c | - | 5e-45 | 40.08% (252) | branched chain amino acid ABC transporter |
| M. marinum M | MMAR_1771 | drrA | 4e-31 | 33.33% (222) | daunorubicin-DIM-transport ATP-binding protein ABC |
| M. avium 104 | MAV_3250 | - | 5e-28 | 33.94% (221) | daunorubicin resistance ATP-binding protein DrrA |
| M. thermoresistible (build 8) | TH_3313 | - | 9e-44 | 37.15% (253) | PUTATIVE ABC transporter related |
| M. ulcerans Agy99 | MUL_2014 | drrA | 4e-31 | 33.33% (222) | daunorubicin-DIM-transport ATP-binding protein ABC |
| M. vanbaalenii PYR-1 | Mvan_2844 | - | 4e-43 | 36.76% (253) | ABC transporter-related protein |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_1771|M.marinum_M --------------------------------------MRNNDLAVEVRG
MUL_2014|M.ulcerans_Agy99 --------------------------------------MRNNDLAVEVRG
Mb2961|M.bovis_AF2122/97 --------------------------------------MRNDDMAVVVNG
Rv2936|M.tuberculosis_H37Rv --------------------------------------MRNDDMAVVVNG
MAV_3250|M.avium_104 --------------------------------------MSAP--AIEVEG
MLBr_00590|M.leprae_Br4923 -------------------------------MSSACTVPETPEVVIRLRG
Mflv_3571|M.gilvum_PYR-GCK MTEP----------EAFEDAVAEIAGVHRE------IRADEGEVLLQTNE
Mvan_2844|M.vanbaalenii_PYR-1 MTAPDNDATAETALENFEDSVADIAGVHRE------IQAEEGEVLLQTTD
TH_3313|M.thermoresistible__bu ------------------MSIEELAGVHRD------IRAAEGEILLETVD
MAB_2623c|M.abscessus_ATCC_199 MTKHR-DSSLDDEQDSVEMLQAEIEEGSDEGESGVPVDPGEAEVLLEVKD
MSMEG_1218|M.smegmatis_MC2_155 ------------------------------------------MSVLKVAN
:
MMAR_1771|M.marinum_M VRKAFG--DVVALNDISFEVGRGEVIGLLGPNGAGKTTMVDILSTLTRPD
MUL_2014|M.ulcerans_Agy99 VRKAFG--DVVALNDISFEVGRGEVIGLLGPNGAGKTTMVDILSTLTRPD
Mb2961|M.bovis_AF2122/97 VRKTYGKGKIVALDDVSFKVRRGEVIGLLGPNGAGKTTMVDILSTLTRPD
Rv2936|M.tuberculosis_H37Rv VRKTYGKGKIVALDDVSFKVRRGEVIGLLGPNGAGKTTMVDILSTLTRPD
MAV_3250|M.avium_104 LTKKFG-GSTLALAGVDFSVPAGTVCGLLGHNGAGKTTTINILSTLIRPT
MLBr_00590|M.leprae_Br4923 VCKHYG--SILAVSNLDLDIHSAEVLALLGPNGAGKTTTVEMCEGFVRPD
Mflv_3571|M.gilvum_PYR-GCK LTVKFG--GLTALDAVTFNIRRGEILGLIGPNGAGKTTCFNAITGVYRPT
Mvan_2844|M.vanbaalenii_PYR-1 LTVKFG--GLTALDAVTFNIRRGEILGLIGPNGAGKTTCFNAITGVYRPT
TH_3313|M.thermoresistible__bu LTVKFG--GLVALDSVSFNIRRGEILGLIGPNGAGKTTCFNAITGVYRPA
MAB_2623c|M.abscessus_ATCC_199 LTLKFG--GLQALDGVSFDIRRGEILGLVGPNGAGKTTCFNAITGVYKPT
MSMEG_1218|M.smegmatis_MC2_155 LSRSFG--GIHAVNDVSFDVEKAEIVGIIGPNGSGKSTLFNLLTGAIKPG
: :* *: : :.: . : .::* **:**:* .: :*
MMAR_1771|M.marinum_M AGSAHVAG--SDVVAQPAGVRRSIMVTGQQVAVDDGLTGEQN--------
MUL_2014|M.ulcerans_Agy99 AGSAHVAG--YDVVAQPAGVRRSIMVTGQQVAVDDGLTGEQN--------
Mb2961|M.bovis_AF2122/97 AGSAIIAG--YDVVSEPAGVRRSIMVTGQQVAVDDALSGEQN--------
Rv2936|M.tuberculosis_H37Rv AGSAIIAG--YDVVSEPAGVRRSIMVTGQQVAVDDALSGEQN--------
MAV_3250|M.avium_104 SGRARVAG--YDVVRQPAEVRASIGMAGQFTGMDPMLTGREN--------
MLBr_00590|M.leprae_Br4923 AGTIEVLG--LDPITDNARLRARIGVMLQGGGGYPAARAGEM--------
Mflv_3571|M.gilvum_PYR-GCK SGSVTFDGSTIGRIKRHQITRLGIARTFQNIRLFGEMTALENVMVGTDAR
Mvan_2844|M.vanbaalenii_PYR-1 SGIVTFDGAPIGRIKRHQITRLGIARTFQNIRLFGEMTALENVMVGTDAR
TH_3313|M.thermoresistible__bu SGAVIFDGQKLGRIKRHQITRLGIARTFQNIRLWGEMTALENVVVGTDAR
MAB_2623c|M.abscessus_ATCC_199 SGSIVFNGKPLRRLRRHQITRRGIARTFQNIRLFGEMTALENVAVGTDAR
MSMEG_1218|M.smegmatis_MC2_155 GGSIELFGRNTTRLAPYKIARAGLGRTFQIPALFTNMTVREN--------
.* . * : * : * :
MMAR_1771|M.marinum_M -------LVLFGRLYGLRKSRARQRAQELLDQFGLTYAGKRLVRTYSGGM
MUL_2014|M.ulcerans_Agy99 -------LVLFGRLYGLRKSRARQRAQELLDQFGLTYAGKRLVRTYSGGM
Mb2961|M.bovis_AF2122/97 -------LVLFGRLWGLSKSAARKRAAELLEQFSLVHAGKRRVGTYSGGM
Rv2936|M.tuberculosis_H37Rv -------LVLFGRLWGLSKSAARKRAAELLEQFSLVHAGKRRVGTYSGGM
MAV_3250|M.avium_104 -------LVLFGRLRGLNRRRAKARADELLEQFNLVDAADRRLSTYSGGM
MLBr_00590|M.leprae_Br4923 -------LNLVA-----SYAADPLDPEWLLETLGLTDVARTTYRRLSGGQ
Mflv_3571|M.gilvum_PYR-GCK HHTSVPGALIRSPRHRREERSAIERSAALLHFVGIAHRGEEKAKNLSYGD
Mvan_2844|M.vanbaalenii_PYR-1 HHTSVPGALIRSPRHRREERSAIERSAALLHFVGIAHRGEEKAKNLSYGD
TH_3313|M.thermoresistible__bu HKTSVPGALFRSPRHRREERSAIERATALLHFVGIAHRAEEKAKNLPYGD
MAB_2623c|M.abscessus_ATCC_199 HKTSVLGALLRTPRHRREEHYAVDVGMGLLDFVGIADDADVKAKNLPYGS
MSMEG_1218|M.smegmatis_MC2_155 ---------LWTAAVQFDWDNARADADAVLEQLELTRVADDLANTLSGGQ
: :*. . :. . . *
MMAR_1771|M.marinum_M RRRIDIACGLVVEPQVAFLDEPTTGLDPRSRQAIWDLVTSFKKLGIATLL
MUL_2014|M.ulcerans_Agy99 RRRIDIACGLVVEPQVAFLDEPTTGLDPRSRQAIWDLVTSFKKLGIATLL
Mb2961|M.bovis_AF2122/97 RRRIDIACGLVVQPQVAFLDEPTTGLDPRSRQAIWDLVASFKKLGIATLL
Rv2936|M.tuberculosis_H37Rv RRRIDIACGLVVQPQVAFLDEPTTGLDPRSRQAIWDLVASFKKLGIATLL
MAV_3250|M.avium_104 YRRVDLASALVVPPKVLFLDEPTTGLDPRSRRDVWALVSSLRVQGISVLL
MLBr_00590|M.leprae_Br4923 QQRLALACTLVGRPELVFLDEPTAGMDTHARLLVWELIDTLRRDGVTVVL
Mflv_3571|M.gilvum_PYR-GCK QRRLEIARALATEPKLLCLDEPAAGFNPSEKSALIDLIRKIRDDGYTVLL
Mvan_2844|M.vanbaalenii_PYR-1 QRRLEIARALATEPKLLCLDEPAAGFNPSEKSALIELIRKIRDDGYTVLL
TH_3313|M.thermoresistible__bu QRRLEIARALATEPKLLCLDEPAAGFNPSEKAALIDLIRKIRDDGYTVLL
MAB_2623c|M.abscessus_ATCC_199 QRRLEIARALATEPKLLCLDEPAAGFTPSEKDSLIELIQRIRDYGYTVLL
MSMEG_1218|M.smegmatis_MC2_155 QRLVEMGRVLMQKPKVALLDEVAAGVHPRLRQIMLDAIRTLRDSGTTFLI
: : :. * *:: *** ::*. . : : : :: * : ::
MMAR_1771|M.marinum_M TTQYLEEADALSDRIILIDHGKIIADGTANELKHRAGDTFCEIVPRHLKD
MUL_2014|M.ulcerans_Agy99 TTQYLEEADALSDRIILIDHGKIIADGTANELKHRAGDTFCEIVPRHLKD
Mb2961|M.bovis_AF2122/97 TTQYLEEADALSDRIILIDHGIIIAEGTANELKHRAGDTFCEIVPRDLKD
Rv2936|M.tuberculosis_H37Rv TTQYLEEADALSDRIILIDHGIIIAEGTANELKHRAGDTFCEIVPRDLKD
MAV_3250|M.avium_104 TTQYLEEADVLSDSIVVIDHGRVIASGTSEELKRAVGTSYCQVTPANPAE
MLBr_00590|M.leprae_Br4923 TTHQLKEAEELADRLVIIDHGRMIAAGTPTELMHTGAKDQLRFSAPPRLD
Mflv_3571|M.gilvum_PYR-GCK IEHDMRLVMGVTDRIVVLEFGRKIADGLPSEIRE---------------D
Mvan_2844|M.vanbaalenii_PYR-1 IEHDMRLVMGVTDRIVVLEFGRKIADGLPAEIRE---------------D
TH_3313|M.thermoresistible__bu IEHDMKLVMGVTDRIVVLEFGRKIADGPPAAIRE---------------D
MAB_2623c|M.abscessus_ATCC_199 IEHDMKLVMGVTDRIVVLEFGRKIADGLPAEVRN---------------D
MSMEG_1218|M.smegmatis_MC2_155 IEHDMELAQDICDRIIVMDAGKIVAQGTFDEISH---------------D
: :. . : * ::::: * :* * : . :
MMAR_1771|M.marinum_M LDATVAALGSLLPEHNRAMVTSESDRITMPAPDGTRTLIEAARRIDEANI
MUL_2014|M.ulcerans_Agy99 LDATVAALGSLLPEHNRAMVTSESDRITMPAPDGTRTLIEAARKIDEANI
Mb2961|M.bovis_AF2122/97 LDAIVAALGSLLPEHHRAMLTPDSDRITMPAPDGIRMLVEAARRIDEARI
Rv2936|M.tuberculosis_H37Rv LDAIVAALGSLLPEHHRAMLTPDSDRITMPAPDGIRMLVEAARRIDEARI
MAV_3250|M.avium_104 LPQVAAALTGLEG----IEIDSDTGSVSVFAPDGVATLVEVFRRVDALGL
MLBr_00590|M.leprae_Br4923 LSLLAFALP-----EDYKTTELTPGEYLVAGPIDPQVLATVTAWCAQINV
Mflv_3571|M.gilvum_PYR-GCK PKVIAAYLG------------VPDDELA----------------------
Mvan_2844|M.vanbaalenii_PYR-1 PKVIAAYLG------------VPDDELT----------------------
TH_3313|M.thermoresistible__bu PAVIAAYLG------------VPDDEIG----------------------
MAB_2623c|M.abscessus_ATCC_199 PAVIEAYLG------------VADEDFHGPGWLDSAPPDSESER------
MSMEG_1218|M.smegmatis_MC2_155 PHVMEAYLG------------VPTNE------------------------
*
MMAR_1771|M.marinum_M ELADIALRRPSLDDVFLSMTTDPSEAHALSHVASGAML
MUL_2014|M.ulcerans_Agy99 ELADIALRRPSLDDVFLSMTTDPSEAHVLSHVASGAML
Mb2961|M.bovis_AF2122/97 ELADIALRRPSLDDVFLAMTTDPTES--LTHLVSGSAR
Rv2936|M.tuberculosis_H37Rv ELADIALRRPSLDHVFLAMTTDPTES--LTHLVSGSAR
MAV_3250|M.avium_104 ELADISLRKPSLDEAFLHLTER---------TVARS--
MLBr_00590|M.leprae_Br4923 LTTNMRVEQHSLEDVFLDLTGRKLR-------------
Mflv_3571|M.gilvum_PYR-GCK --------------------------------------
Mvan_2844|M.vanbaalenii_PYR-1 --------------------------------------
TH_3313|M.thermoresistible__bu --------------------------------------
MAB_2623c|M.abscessus_ATCC_199 --------------------------------------
MSMEG_1218|M.smegmatis_MC2_155 --------------------------------------