For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MAARILLADDHALVRSGLRMIIDAEPDLQVVAEAADGYEALSALDTETVDLAILDIAMPRMTGLQAAREI NRSHPDVRILILSMYDNEQYFFEALKAGASGYVLKSVADRDLLEACRATLRGEPFLYAGAITALIRDFLH RARQGGEPPDSILTPREEEVLKLIAEGYSTREIAATLTISAKTVDRHRTNILAKLGLRDRLALTRYAIRA GLIEP
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. smegmatis MC2 155 | MSMEG_0856 | - | - | 100% (215) | DNA-binding response regulator, LuxR family protein |
M. smegmatis MC2 155 | MSMEG_1494 | - | 7e-30 | 35.00% (220) | transcriptional regulatory protein DegU |
M. smegmatis MC2 155 | MSMEG_5244 | - | 6e-29 | 33.33% (204) | two component transcriptional regulatory protein devr |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3157c | devR | 3e-29 | 33.82% (204) | two component transcriptional regulatory protein DevR |
M. gilvum PYR-GCK | Mflv_5014 | - | 2e-31 | 36.11% (216) | two component LuxR family transcriptional regulator |
M. tuberculosis H37Rv | Rv3133c | devR | 3e-29 | 33.82% (204) | two component transcriptional regulatory protein DevR |
M. leprae Br4923 | MLBr_01286 | - | 7e-13 | 36.61% (112) | putative two-component response regulatory protein |
M. abscessus ATCC 19977 | MAB_1522 | - | 2e-30 | 38.03% (213) | putative two-component system response regulator LuxR |
M. marinum M | MMAR_3480 | - | 1e-29 | 33.17% (208) | two-component transcriptional regulatory protein |
M. avium 104 | MAV_5280 | - | 1e-31 | 37.44% (211) | two-component system response regulator |
M. thermoresistible (build 8) | TH_2159 | - | 6e-30 | 34.85% (198) | TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN DEVR (PROBABLY |
M. ulcerans Agy99 | MUL_2423 | devR | 2e-29 | 34.63% (205) | two component transcriptional regulatory protein DevR |
M. vanbaalenii PYR-1 | Mvan_1646 | - | 1e-95 | 82.63% (213) | two component LuxR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment MSMEG_0856|M.smegmatis_MC2_155 -----------MAARILLADDHALVRSGLRMIIDAEPD-LQVVAEAADGY Mvan_1646|M.vanbaalenii_PYR-1 -------MTPPPVARILLADDHALVRSGLRMILDAEPD-LRVVVEAADGY Mflv_5014|M.gilvum_PYR-GCK --------MSSEPVRIVLVDDHEMVIEGLKAMLAAFADRVCVVGQSVGAD Mb3157c|M.bovis_AF2122/97 ------------MVKVFLVDDHEVVRRGLVDLLGADPE-LDVVGEAGSVA Rv3133c|M.tuberculosis_H37Rv ------------MVKVFLVDDHEVVRRGLVDLLGADPE-LDVVGEAGSVA MUL_2423|M.ulcerans_Agy99 ------------MVTVFLVDDHEVVRRGLIDLLDADPQ-LDVVGEAGSVS MMAR_3480|M.marinum_M ------------MVKVFLVDDHEVVRRGLVDLLGSDPD-LEIIGEAGSVS TH_2159|M.thermoresistible__bu ------------MVSVFLVDDHEVVRRGLIDLLDSDPD-LEVVGEAGTVA MAB_1522|M.abscessus_ATCC_1997 ------MTD--TEVGVLLVDDQELVRTGLRRILRRKDG-FAIVGECADGS MAV_5280|M.avium_104 ------MTDPAPEITVLLVDDQDLVRSGLRRILRRKDG-FVIVAECADGD MLBr_01286|M.leprae_Br4923 MTGPTTDADAATPHRVLIAEDEALIRLDLAEMLR-DEG-YDIVGEAADGQ :.:.:*. :: .* :: :: :. MSMEG_0856|M.smegmatis_MC2_155 EALSALDTETVDLAILDIAMPRMTGLQAAREINRSHPDVRILILSMYDNE Mvan_1646|M.vanbaalenii_PYR-1 QALNALEQTPVDIAILDIAMPRMTGLQAAREISRKYPHVRILILSMHDNE Mflv_5014|M.gilvum_PYR-GCK QVMGVVTDLDPDIVLCDVRMQGSSGLDVCQQLRRRDPDRKIVMLSVYDDE Mb3157c|M.bovis_AF2122/97 EAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSD Rv3133c|M.tuberculosis_H37Rv EAMARVPAARPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCLILTSYTSD MUL_2423|M.ulcerans_Agy99 EAMARIPAANPDVAVLDVRLPDGDGIELCRDLLSRMPNLRCLILTSYTSD MMAR_3480|M.marinum_M EAMARIPALQPDVAVLDVRLPDGNGIELCRDLLSDLPELRCLMLTSFTSD TH_2159|M.thermoresistible__bu QAMARIPAAQPDVAVLDVRLPDGNGVELCRDLLARMPDLRCLMLTSYTSD MAB_1522|M.abscessus_ATCC_1997 EVAAAVSRARPDVVIMDLRMKQMSGIEAIRLLHAAQ-GPPALALTTFDDD MAV_5280|M.avium_104 EVPAAVAAHRPDVVVMDLRMRRVDGIEATRRLGGR---PPVLALTTFNED MLBr_01286|M.leprae_Br4923 EAVELAERHKPDLVIMDVKMPRRDGIDAASEIASKR-IAPIVVLTAFSQR :. *:.: *: : *:: : : *: . . MSMEG_0856|M.smegmatis_MC2_155 QYFFEALKAGASGYVLKSVADRDLLEACRATLRGEPFLYAGAITALIRDF Mvan_1646|M.vanbaalenii_PYR-1 QYFFEALRAGASGYVLKSVADLDLLKACRATLRGEPFVYPGAVTALIQDY Mflv_5014|M.gilvum_PYR-GCK QYLFQAMRVGASGYLLKSISSEDLVEQLESVHSGKTAIDP-TMAARAVEW Mb3157c|M.bovis_AF2122/97 EAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKL Rv3133c|M.tuberculosis_H37Rv EAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKL MUL_2423|M.ulcerans_Agy99 EAMLDAILAGASGYVVKDIKGMELARAIKEVGAGRSLLDNRAAAALMSRL MMAR_3480|M.marinum_M EAMLEAILAGASGYVVKDIKGMELARAIKDVGAGKSLLDNRAAAALMAKL TH_2159|M.thermoresistible__bu QAMLDAILAGASGYVVKDIKGMELAQAIKDVGAGRSLLDNRAAEALMAKL MAB_1522|M.abscessus_ATCC_1997 ELLSGALRAGAAGFILKDSPAEELVRAVHAVARGEAYLDPAVTSRVLNAY MAV_5280|M.avium_104 ELLSGALRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTY MLBr_01286|M.leprae_Br4923 DLVERARDAGAMAYLVKPFTISDLIPAIALAMSRFSELTALEREVATLAD : . * .** .:::* :* . : MSMEG_0856|M.smegmatis_MC2_155 LHRARQGGEPPDSILTPREEEVLKLIAEGYSTREIAATLTISAKTVDRHR Mvan_1646|M.vanbaalenii_PYR-1 LNRARHGDDLPGTIVTSREEEVLKLIAEGYSTREIAGTLGISAKTVDRHR Mflv_5014|M.gilvum_PYR-GCK PG-ARQG-------LTQRESEILALVVNGLSNRAIAAKLIIGDETVKTHL Mb3157c|M.bovis_AF2122/97 RGAAEKQDPLSG--LTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYV Rv3133c|M.tuberculosis_H37Rv RGAAEKQDPLSG--LTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYV MUL_2423|M.ulcerans_Agy99 RGVVERPDPLSG--LTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYV MMAR_3480|M.marinum_M RGGAEQKDPLSG--LTEQERTLLGHLSEGLTNRQIAARMFLAEKTVKNYV TH_2159|M.thermoresistible__bu RGADHQPDPLAG--LSDQERVLLSLIGEGLTNKQIAARMFLAEKTVKNYV MAB_1522|M.abscessus_ATCC_1997 RRAPAAVSGDAQDKLTARELDVLALIASGATNSEIAEQLVISEVTVKSHI MAV_5280|M.avium_104 RKAAPGPHGAAIAELTTRERDVLTLIGKGLSNSEIADELCISGVTVKSHI MLBr_01286|M.leprae_Br4923 RLETRKLVERAKGLLQVKQG-----MTEPEAFKWIQRAAMDRRTTMKRVA : :: : . : * *:. MSMEG_0856|M.smegmatis_MC2_155 TNILAKLGLRDRLALTRYAIRAGLIEP----- Mvan_1646|M.vanbaalenii_PYR-1 ANLLAKLGLRDRLALTRYAIRVGLIEP----- Mflv_5014|M.gilvum_PYR-GCK SSIYRKLGVSDRTAAVATALREGIFQ------ Mb3157c|M.bovis_AF2122/97 SRLLAKLGMERRTQAAVFATELKRSRPPGDGP Rv3133c|M.tuberculosis_H37Rv SRLLAKLGMERRTQAAVFATELKRSRPPGDGP MUL_2423|M.ulcerans_Agy99 SRLLAKLGMERRTQAAVFAAELKRARSAGHR- MMAR_3480|M.marinum_M SRLLAKLGMERRTQAAVFASRLGQGTRPVQGD TH_2159|M.thermoresistible__bu SRLLAKLGMERRTQAAVFVSKLDRPIDPRG-- MAB_1522|M.abscessus_ATCC_1997 GRIFVKLDLRDRAAAIVYAYDHGIVTPK---- MAV_5280|M.avium_104 GRIFGKLDLRDRAAAIVYAYDNGIVAPR---- MLBr_01286|M.leprae_Br4923 EVVLETLDTPKDT------------------- : .*.