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VVTGGADEQITVLAMAAGRGDRAALAEFIEATQRDVWRLVAYLSDPACADDLTQETFLRAIGALPRFAGR SNARTWLFSIARRVVVDQIRYKTRRPRPAYVADLGEALGQARRGSRFEDIVEIRLLLDGLDEKRREALIF TQVLGLSYAEAAQICGSPIGTIRSRVARARDDLLRAAREGERAG
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_0265 | sigC_1 | - | 100% (184) | ECF subfamily RNA polymerase sigma factor |
| M. marinum M | MMAR_3051 | sigC | 5e-53 | 59.77% (174) | RNA polymerase sigma factor, SigC |
| M. marinum M | MMAR_1334 | sigH | 3e-12 | 30.99% (142) | alternative RNA polymerase sigma-E factor (sigma- 24) SigH |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2095 | sigC | 1e-51 | 56.04% (182) | RNA polymerase sigma factor SigC |
| M. gilvum PYR-GCK | Mflv_4689 | - | 8e-12 | 28.65% (178) | ECF subfamily RNA polymerase sigma-24 factor |
| M. tuberculosis H37Rv | Rv2069 | sigC | 1e-51 | 56.04% (182) | RNA polymerase sigma factor SigC |
| M. leprae Br4923 | MLBr_01448 | - | 4e-51 | 54.35% (184) | RNA polymerase sigma factor SigC |
| M. abscessus ATCC 19977 | MAB_3428c | - | 2e-57 | 64.37% (174) | RNA polymerase sigma-C factor |
| M. avium 104 | MAV_2426 | - | 6e-54 | 60.80% (176) | RNA polymerase sigma factor SigC |
| M. smegmatis MC2 155 | MSMEG_1690 | - | 6e-13 | 32.19% (146) | putative ECF sigma factor RpoE1 |
| M. thermoresistible (build 8) | TH_1729 | sigC | 3e-66 | 69.66% (178) | PROBABLE RNA POLYMERASE SIGMA FACTOR, ECF SUBFAMILY, SIGC |
| M. ulcerans Agy99 | MUL_4849 | sigC_1 | 1e-100 | 100.00% (184) | ECF subfamily RNA polymerase sigma factor |
| M. vanbaalenii PYR-1 | Mvan_1778 | - | 1e-11 | 29.58% (142) | ECF subfamily RNA polymerase sigma-24 factor |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_0265|M.marinum_M --------------------------------------------------
MUL_4849|M.ulcerans_Agy99 --------------------------------------------------
TH_1729|M.thermoresistible__bu --------------------------------------------------
Mb2095|M.bovis_AF2122/97 --------------------------------------------------
Rv2069|M.tuberculosis_H37Rv --------------------------------------------------
MLBr_01448|M.leprae_Br4923 --------------------------------------------------
MAV_2426|M.avium_104 MTPGEGPDLVDKIMASIGEQPTGRPAWMRWLRSHYRRWGLIGVGLFQVAI
MAB_3428c|M.abscessus_ATCC_199 --------------------------------------------------
Mflv_4689|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_1778|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_1690|M.smegmatis_MC2_155 --------------------------------------------------
MMAR_0265|M.marinum_M --------------------------------------------------
MUL_4849|M.ulcerans_Agy99 --------------------------------------------------
TH_1729|M.thermoresistible__bu --------------------------------------------------
Mb2095|M.bovis_AF2122/97 --------------------------------------------------
Rv2069|M.tuberculosis_H37Rv --------------------------------------------------
MLBr_01448|M.leprae_Br4923 --------------------------------------------------
MAV_2426|M.avium_104 AAAQISGIDFGMVAGHMHGAMSGEHLMHESTAWLLALGLAMIAAGVWPAS
MAB_3428c|M.abscessus_ATCC_199 --------------------------------------------------
Mflv_4689|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_1778|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_1690|M.smegmatis_MC2_155 --------------------------------------------------
MMAR_0265|M.marinum_M --------------------------------------------------
MUL_4849|M.ulcerans_Agy99 --------------------------------------------------
TH_1729|M.thermoresistible__bu --------------------------------------------------
Mb2095|M.bovis_AF2122/97 --------------------------------------------------
Rv2069|M.tuberculosis_H37Rv --------------------------------------------------
MLBr_01448|M.leprae_Br4923 --------------------------------------------------
MAV_2426|M.avium_104 ASGVAAITGVYSVALLGYVIVDAFDGEVTATRIASHMPLLLGLAFALLVA
MAB_3428c|M.abscessus_ATCC_199 --------------------------------------------------
Mflv_4689|M.gilvum_PYR-GCK --------------------------------------------------
Mvan_1778|M.vanbaalenii_PYR-1 --------------------------------------------------
MSMEG_1690|M.smegmatis_MC2_155 --------------------------------------------------
MMAR_0265|M.marinum_M --------------------------------------------------
MUL_4849|M.ulcerans_Agy99 --------------------------------------------------
TH_1729|M.thermoresistible__bu --------------------------------------------------
Mb2095|M.bovis_AF2122/97 --------------------------------------------------
Rv2069|M.tuberculosis_H37Rv --------------------------------------------------
MLBr_01448|M.leprae_Br4923 --------------------------------------------------
MAV_2426|M.avium_104 RERVGSRRPGSSDATADAGFAAWAADAPAGRRRGHLRPINRAAPDPTASS
MAB_3428c|M.abscessus_ATCC_199 --------------------------------------------------
Mflv_4689|M.gilvum_PYR-GCK ---------------------MVPVMAMKAPSRSVFVLDVIGGAATEGTV
Mvan_1778|M.vanbaalenii_PYR-1 -------------------------MAMEAPSRSVHVLDVIGGAATEGTV
MSMEG_1690|M.smegmatis_MC2_155 ---------------------------MTLP-------------------
MMAR_0265|M.marinum_M -----------------MVTGGADEQITVLAMAAGRGDRAALAEFIEATQ
MUL_4849|M.ulcerans_Agy99 -----------------MVTGGADEQITVLAMAAGRGDRAALAEFIEATQ
TH_1729|M.thermoresistible__bu ------------------VGLRDDDRVTRLALAAGRGDPAALEQFIRATQ
Mb2095|M.bovis_AF2122/97 ----------------MTATASDDEAVTALALSAAKGNGRALEAFIKATQ
Rv2069|M.tuberculosis_H37Rv ----------------MTATASDDEAVTALALSAAKGNGRALEAFIKATQ
MLBr_01448|M.leprae_Br4923 -----------------MIASSGDEAVTDLALAAARGSKRALEAFIKATQ
MAV_2426|M.avium_104 TTTRRRIGKPAQLRWLGMIAPSDDEAVTELALSAARGNARALEAFIKATQ
MAB_3428c|M.abscessus_ATCC_199 -----------------MATGTDDEQLLELALSAGRGDQSALESLVKATQ
Mflv_4689|M.gilvum_PYR-GCK FPTMTDTNGLAASPAPADAGEAREETDAELTARFERDAIPLLDQLYGGAL
Mvan_1778|M.vanbaalenii_PYR-1 FPTMTDITGSAAEATLDGEAPAREETDAELTARFERDAIPLLDQLYGGAL
MSMEG_1690|M.smegmatis_MC2_155 -PDLDDL-----------------ESEAELTARFIRDAMPYQPSLLRTAR
: *: :. : :
MMAR_0265|M.marinum_M RDVWRLVAYLSDPACADDLTQETFLRAIGALPRFAGRSNARTWLFSIARR
MUL_4849|M.ulcerans_Agy99 RDVWRLVAYLSDPACADDLTQETFLRAIGALPRFAGRSNARTWLFSIARR
TH_1729|M.thermoresistible__bu RDVWRTVAYLADPGSADDLTQETFLRAIRSLPKFNGRSSARTWLLSIARR
Mb2095|M.bovis_AF2122/97 QDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARH
Rv2069|M.tuberculosis_H37Rv QDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLLAIARH
MLBr_01448|M.leprae_Br4923 QDVWRFVAYLSDVGNADDLTQETFLRAIGAIERFSGHSSGRTWLLAIARR
MAV_2426|M.avium_104 QDVWRFVAYLCDAGSADDLTQETFLRAIGAIERFSGRSSARTWLLSIARR
MAB_3428c|M.abscessus_ATCC_199 GDVWRFVAYLADSGVADDLTQETYLRALGALPRFAGRSTVRTWLLSIARR
Mflv_4689|M.gilvum_PYR-GCK RMTR-------NPADAEDLLQETMVKAYSGFRSFREGTNLKAWLYRILTN
Mvan_1778|M.vanbaalenii_PYR-1 RMTR-------NPADAEDLLQETMVKAYSGFRSFREGTNLKAWLYRILTN
MSMEG_1690|M.smegmatis_MC2_155 RLAR-------TEADAEDLVQDALLNAYVGFRRFRPGTNLRAWLFRIMHN
. . *:** *:: :.* .: * :. ::** * .
MMAR_0265|M.marinum_M VVVDQIRYKTRRPRP-----------AYVADLGEALGQARRGSRFEDI--
MUL_4849|M.ulcerans_Agy99 VVVDQIRYKTRRPRP-----------AYVADLGEALGQARRGSRFEDI--
TH_1729|M.thermoresistible__bu VVVDQIRHNQSRPRT-----------SYAVDVHTVLDKRRPDGRFEDI--
Mb2095|M.bovis_AF2122/97 VVADHIRHVRSRPRT-----------TRGARPEHLIDGDRHARGFEDL--
Rv2069|M.tuberculosis_H37Rv VVADHIRHVRSRPRT-----------TRGARPEHLIDGDRHARGFEDL--
MLBr_01448|M.leprae_Br4923 VVADHIRRAQTRPRT-----------TFDGYPERMLNADRHARGFEDL--
MAV_2426|M.avium_104 VVADHIRHLQSRPRA-----------AVGADPEHVLRTDRHARGFEDL--
MAB_3428c|M.abscessus_ATCC_199 VVADHIRHLKSRPRI-----------AHGADLEEAS-LRRPTHRFEEL--
Mflv_4689|M.gilvum_PYR-GCK TYINSYRKKQRQPAEYPTEEITDWQLAANAEHTSTGLRSAEVEALELLPD
Mvan_1778|M.vanbaalenii_PYR-1 TYINSYRKKQRQPAEYPTEEITDWQLAANAEHSSTGLRSAEVEALELLPD
MSMEG_1690|M.smegmatis_MC2_155 RWISTHRMTQRRPATFCVDEVTDGDLAAGALHVSLGWRSAEDEALDTIPD
. * :* : :: :
MMAR_0265|M.marinum_M VEIRLLLDGLDEKRREALIFTQVLGLSYAEAAQICGSPIGTIRSRVARAR
MUL_4849|M.ulcerans_Agy99 VEIRLLLDGLDEKRREALIFTQVLGLSYAEAAQICGSPIGTIRSRVARAR
TH_1729|M.thermoresistible__bu VEIKLLLDGLDTDRRHALLLTQVLGLSYAEAAEVCGCAVGTIRSRVARAR
Mb2095|M.bovis_AF2122/97 VEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR
Rv2069|M.tuberculosis_H37Rv VEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR
MLBr_01448|M.leprae_Br4923 VEVTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARAR
MAV_2426|M.avium_104 VEVTTMIAGLNPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARAR
MAB_3428c|M.abscessus_ATCC_199 VELKSLLAALDDDRREALVLTQVVGLSYAETADVCGCAIGTIRSRVARAR
Mflv_4689|M.gilvum_PYR-GCK SEIKEALQALPEDFRMAVYYADVEGFPYKEIAEIMETPIGTVMSRLHRGR
Mvan_1778|M.vanbaalenii_PYR-1 NEIKEALQALPDEFRMAVYYADVEGFPYKEIAEIMDTPIGTVMSRLHRGR
MSMEG_1690|M.smegmatis_MC2_155 AHVRTALDALPEGFRTVVYYADIEGFTYAETAVLMGIPVGTVMSRIARAR
.: : * * .: ::: *:.* : * : .:**: **: *.*
MMAR_0265|M.marinum_M DDLLRAAREGERAG-----------------
MUL_4849|M.ulcerans_Agy99 DDLLRAAREGERAG-----------------
TH_1729|M.thermoresistible__bu DDLLQQARPVDRTG-----------------
Mb2095|M.bovis_AF2122/97 DALLADAEPDDLTG-----------------
Rv2069|M.tuberculosis_H37Rv DALLADAEPDDLTG-----------------
MLBr_01448|M.leprae_Br4923 DALLADTEHNHLTG-----------------
MAV_2426|M.avium_104 DALLADGERNDLTG-----------------
MAB_3428c|M.abscessus_ATCC_199 DELIGWAEPENLTG-----------------
Mflv_4689|M.gilvum_PYR-GCK RQLRELLAG-VARDRGFIRGEQLEAPEEVTS
Mvan_1778|M.vanbaalenii_PYR-1 RQLRELLAG-VARDRGFIRGEQVDAPEEVTS
MSMEG_1690|M.smegmatis_MC2_155 QRLRAALTEDAALNQDTEVTDNTQASADCAA
* .