For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_4110 | - | - | 100% (209) | putative transcriptional regulator, TetR family |
| M. thermoresistible (build 8) | TH_3283 | - | 2e-23 | 38.95% (172) | PUTATIVE putative transcriptional regulator, TetR family |
| M. thermoresistible (build 8) | TH_0688 | - | 2e-19 | 34.21% (190) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3192c | - | 9e-21 | 35.52% (183) | TetR family transcriptional regulator |
| M. gilvum PYR-GCK | Mflv_5008 | - | 2e-63 | 56.35% (197) | TetR family transcriptional regulator |
| M. tuberculosis H37Rv | Rv3167c | - | 9e-21 | 35.52% (183) | TetR family transcriptional regulator |
| M. leprae Br4923 | MLBr_00316 | - | 9e-07 | 43.94% (66) | putative TetR/AcrR-family transcriptional regulator |
| M. abscessus ATCC 19977 | MAB_4749c | - | 3e-20 | 31.46% (178) | TetR family transcriptional regulator |
| M. marinum M | MMAR_0340 | - | 1e-19 | 35.71% (168) | TetR family transcriptional regulator |
| M. avium 104 | MAV_4057 | - | 2e-20 | 34.97% (183) | transcriptional regulator, TetR family protein |
| M. smegmatis MC2 155 | MSMEG_1500 | - | 6e-64 | 58.55% (193) | TetR family protein transcriptional regulatory protein |
| M. ulcerans Agy99 | MUL_4780 | - | 2e-19 | 35.71% (168) | TetR family transcriptional regulator |
| M. vanbaalenii PYR-1 | Mvan_0778 | - | 9e-64 | 58.16% (196) | TetR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
Mb3192c|M.bovis_AF2122/97 ----MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAA
Rv3167c|M.tuberculosis_H37Rv ----MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAA
MAV_4057|M.avium_104 ----MKADPSGLDKAPGAGRPRDPRIDSAILSATAELLVQTGYSNISLAA
MMAR_0340|M.marinum_M ----MVAD---------FGRPRDPRIDGAVLRATVELLAETGYAGLLVSA
MUL_4780|M.ulcerans_Agy99 ----MVAD---------FGRPRDPRIDGAVLRATVELLAETGYAGLLVSA
Mflv_5008|M.gilvum_PYR-GCK ------------MTAPVRGRPRDPDADRAILQAALDLFIERGVEGSSIEQ
MSMEG_1500|M.smegmatis_MC2_155 ------------MTGPGRGRPRDAAADRAILHAALDLFIERGVEGTSIEQ
Mvan_0778|M.vanbaalenii_PYR-1 ------------MTAS-RGRPRDAGADVAILRAGLELFIERGVEGTSMEQ
TH_4110|M.thermoresistible__bu ---VTATDAAATGRAAARGRPRDPALDSAILDAALEIFVEQGISALSIEQ
MAB_4749c|M.abscessus_ATCC_199 -------MNGTRPRQPRRGRRPTEEVREEVLQAAGELLFTEGMGGFTIDK
MLBr_00316|M.leprae_Br4923 MSVPRSGLSVQMAQPARPLRADAARNRARILGVAYEAFATEGLS-VPIDE
* :* . : : * :
Mb3192c|M.bovis_AF2122/97 VAERAGTTKSALYRRWSSKAELVHEAAFPAAPTALQAAAG------DIAA
Rv3167c|M.tuberculosis_H37Rv VAERAGTTKSALYRRWSSKAELVHEAAFPAAPTALQAAAG------DIAA
MAV_4057|M.avium_104 VAERAGTTKSALYRRWSSKAELVHEAAFPTAPTALEAPAG------DIAA
MMAR_0340|M.marinum_M IAKRAGTSKPAIYRRWPSKAHLVHEAVFPIDAATAVPDTG------SPVD
MUL_4780|M.ulcerans_Agy99 IAKRAGTSKPAIYRRWPSKAHLVHEAVFPIDAATAVPDTG------SPVD
Mflv_5008|M.gilvum_PYR-GCK IAKRAGVGKPTVYRRWGTKEELIAAAMETLVAEEVGWTSPEAIETRSPHV
MSMEG_1500|M.smegmatis_MC2_155 IARRAGVGKPTIYRRWSTKEDLIAAAMETLVAEEVVWASPEEIESRSPHV
Mvan_0778|M.vanbaalenii_PYR-1 IARKAGVGKPTIYRRWATKEELISAAMETLVVAETGWASPEAIATESPYE
TH_4110|M.thermoresistible__bu VARRAGVGKPTIYRRWSDKEQLVADAIEHRVSAELAWPTPAEASVSDPYE
MAB_4749c|M.abscessus_ATCC_199 VAALSGASKMTIYKWWPSKGALALDGYFRKVEPDLNFPDSG-----EIER
MLBr_00316|M.leprae_Br4923 IARRAGVGAGTVYRHFPTKEALCAAVIGDRMPHLVDDGYVLLKS-AGPGE
:* :*. ::*: : * *
Mb3192c|M.bovis_AF2122/97 DIRMMIAATRDVFTTPVVRAALPGLVADMTADAELNARVLARFADLF-AA
Rv3167c|M.tuberculosis_H37Rv DIRMMIAATRDVFTTPVVRAALPGLVADMTADAELNARVLARFADLF-AA
MAV_4057|M.avium_104 DMRMMIEATRDVFTTPVVRAALPGLVADMTADPALNARVMSRFADLF-TA
MMAR_0340|M.marinum_M DLREMVRRTTAVLSTPAAKAALPGLIGEMAADPTLHSALLVRFGEIFGHG
MUL_4780|M.ulcerans_Agy99 DLREMVRRTTAVLSTPAAKAAQPGLIGEMAADPTLHSALLVRFGEIFGHG
Mflv_5008|M.gilvum_PYR-GCK LVEAAIDSAAAATAAPYYRALVARVYGSAVSHPELMTVYWDRYILPRRVQ
MSMEG_1500|M.smegmatis_MC2_155 LVEAAIESAAATTASPSYRALVARVYGSAVSHPGLMAVYWDRYILPRRAQ
Mvan_0778|M.vanbaalenii_PYR-1 LVEAAIEGAAVATTTPQYRALVARVFGSAVSHPELMATYWRRYILPRRRL
TH_4110|M.thermoresistible__bu LVRRNISAAARTAADPAFRGLIAAIYGSAVTHPALLRTYWEHYILPRRTA
MAB_4749c|M.abscessus_ATCC_199 DLRAQMRAFLGVIRDTAAGAIIGELIGQAQVDPELKAAFLQRYSGPRRAL
MLBr_00316|M.leprae_Br4923 ALFTYLRSLVLHWG-ATDRGLVDALAGAGGID---ILGVAPDAEDAFLTI
: : . . : . .
Mb3192c|M.bovis_AF2122/97 VRMRLREAVDRGEAHPDVDPDRLIELIGGATMLRMLLYP---DDMLDDAW
Rv3167c|M.tuberculosis_H37Rv VRMRLREAVDRGEAHPDVDPDRLIELIGGATMLRMLLYP---DDMLDDAW
MAV_4057|M.avium_104 VRVRLGEAVDRGEAHPDVDPDRLIELIGGATMLRMLLRP---EEELDDAW
MMAR_0340|M.marinum_M LTTWLDNAAARGQVRADVTAPELAEAIAGIVLIGLLTRPGELEPGVGDAW
MUL_4780|M.ulcerans_Agy99 LTTWLDNAAARGQVRADVTAPELAEAIAGIVLIGLLTRPGELEPGVGDAW
Mflv_5008|M.gilvum_PYR-GCK ATRLLERARELGTVAADTDLDVAIDMMVGAITYRVLRPN---PPDVDEMR
MSMEG_1500|M.smegmatis_MC2_155 ARRLLERARELGTVSEDTDLDVAIDMMVGAITYRVLQPD---PPDVDGMR
Mvan_0778|M.vanbaalenii_PYR-1 AAALLERARELGTVAADANPDVAIDMMVGAVTYRVLQPD---PPDVDEMR
TH_4110|M.thermoresistible__bu AIALLRRARDLGTVAADADLDVLVDMLAGAVTYRVLQPE---PPSARQLR
MAB_4749c|M.abscessus_ATCC_199 AVAAIRRAQERGQLRANVDPEVMVDQLWGACYHRLLVPD----QPLTAGF
MLBr_00316|M.leprae_Br4923 LSDLLYAAQYAGTARTDVGVREVKSILVGCQAM----------EAYNSAL
: * * :. . : *
Mb3192c|M.bovis_AF2122/97 VDQTTAIVVRGVHRAAPGGSVV
Rv3167c|M.tuberculosis_H37Rv VDQTTAIVVRGVHRAAPGGSVV
MAV_4057|M.avium_104 VEQTTAIVVHGVRR--------
MMAR_0340|M.marinum_M IDRTTTLLLKGIRKGTPQ----
MUL_4780|M.ulcerans_Agy99 IDRTTTLLLKGIRKGTPQ----
Mflv_5008|M.gilvum_PYR-GCK RYLREVYRQAGLLPPG------
MSMEG_1500|M.smegmatis_MC2_155 RYLRAVYRQIGLLS--------
Mvan_0778|M.vanbaalenii_PYR-1 RYLREVYRQVGLLPD-------
TH_4110|M.thermoresistible__bu CYLEVAYRQVGLLP--------
MAB_4749c|M.abscessus_ATCC_199 VDALLDNLFKGIGA--------
MLBr_00316|M.leprae_Br4923 AERVTDVVVDGLRAAR------
*: