For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_3163 | - | - | 100% (402) | putative Integrase, catalytic region |
| M. thermoresistible (build 8) | TH_2026 | - | 1e-06 | 31.33% (166) | transposase |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2836 | - | 1e-06 | 28.79% (132) | transposase |
| M. gilvum PYR-GCK | - | - | - | - | - |
| M. tuberculosis H37Rv | Rv2812 | - | 2e-16 | 27.87% (305) | transposase |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_1373 | - | 9e-33 | 30.50% (400) | transposase for ISMyma05 |
| M. avium 104 | MAV_3347 | - | 2e-09 | 25.30% (328) | transposase |
| M. smegmatis MC2 155 | MSMEG_6600 | - | 3e-07 | 26.01% (323) | transposase |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_0573 | - | 3e-31 | 35.08% (305) | integrase catalytic subunit |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_1373|M.marinum_M -----------------MLQELRMS------EMRYRAVLEVLDG-APVTA
Mvan_0573|M.vanbaalenii_PYR-1 -----------------MTQQLPNSPNDWVIEHRYRAVRQVLDG-VSKSQ
MAV_3347|M.avium_104 MKCELLKNAQLTPEVFVSHRNAPLS-----ETGRLRLARCVVEDGWSLRR
MSMEG_6600|M.smegmatis_MC2_155 ----------------MVHRNAPLS-----ETGRLRLARCVVDDGWSRRR
Mb2836|M.bovis_AF2122/97 --------------------------------------------------
Rv2812|M.tuberculosis_H37Rv ----MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVREL
TH_3163|M.thermoresistible__bu -----------------MAQKVTAMD--------IRMAAAVAGEIDNVAE
MMAR_1373|M.marinum_M VARRFGVSRQTVHAWLRRYAEEGAALNLEDRSSRPHRCPHQMPVEVEARV
Mvan_0573|M.vanbaalenii_PYR-1 VAQECGASRQSVHSWVIRYEALGVAG-LADRSRRPLTSPNELSPAVVAMV
MAV_3347|M.avium_104 AAERFQVAVTTAQRWASRYRELGPAG-MADRSSRPLRSPNQTPTRTERRI
MSMEG_6600|M.smegmatis_MC2_155 AAERFQVSVTTVCRWVNRYLELGEAG-MADRSSRPHHSPNRTPTRTERRI
Mb2836|M.bovis_AF2122/97 --------------------------------------------------
Rv2812|M.tuberculosis_H37Rv ASREHTDPFGRRVRISRQTIDRWIRGWRAGGFDALVPNPRQCTPRTPAEV
TH_3163|M.thermoresistible__bu FCRRRKISRQTFYKFRRRFRDSGIEG-LQELSRRPLTSPGQTPVEVEDLI
MMAR_1373|M.marinum_M LTLR----DAHPRWGPTRIVYELQR--DGVPVVPGRSS-VYRALVRNGRI
Mvan_0573|M.vanbaalenii_PYR-1 CELR----RTYPRWGAQRIAHELAL--RGVDAPPSRSS-VYRILVRHGLV
MAV_3347|M.avium_104 IKVR----VLR-RWGPARIAYLLGLNVSTVHRVLTRYK-LAKLRWLDRAT
MSMEG_6600|M.smegmatis_MC2_155 IGVR----VTR-RWGPARIAYLLRLNVSTVHNVLRRYR-IARLRWLDRAT
Mb2836|M.bovis_AF2122/97 --------------------------------------------------
Rv2812|M.tuberculosis_H37Rv LELA----VALRRENPQRTAAAIRRILRTQLGWAPDER-TLQRNFHRLGL
TH_3163|M.thermoresistible__bu VLRRKQLIEQGRDHGAQSIVWSFERDGVTVPSVSTVWQRGWQILSRRGAI
MMAR_1373|M.marinum_M DPAKRRRRRSDYKRWERGRPMELWQMDVVGGLHLRDGIEVKVVTGIDDNS
Mvan_0573|M.vanbaalenii_PYR-1 AAQQQNHKR-KYRRWQRDAPMQLWQIDIMGGVFLVDGRECKVVTGIDDHS
MAV_3347|M.avium_104 GQVVRRMEAACCGDLVHVDVKKLGKIPAGGGWRMLGRTVGNRNAQADKTS
MSMEG_6600|M.smegmatis_MC2_155 GRVVRRMESAACGDLVHADVKKLGKIPAGGGWRMLGRTAGRKNSLADKSS
Mb2836|M.bovis_AF2122/97 --------------------------------------------------
Rv2812|M.tuberculosis_H37Rv TGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDHSR
TH_3163|M.thermoresistible__bu TPQPQKRPKSATKRFVFSCPNECWQSDWTG-WVLADGSPAGIAGSLDDHS
MMAR_1373|M.marinum_M RFVVSAKVVAR-ATARPVCAALLEALRRHGVPEQILTDNGKVFTGRFGPG
Mvan_0573|M.vanbaalenii_PYR-1 RFVVMATVVAD-PGARAVCAAFTATMAIYGVPSEVLTDNGKQFTGRFTKP
MAV_3347|M.avium_104 GERSKHRHPLRGYHFLHTAIDAHSRLAYSELLTDERKETAAAFWLRAQAW
MSMEG_6600|M.smegmatis_MC2_155 GVKTRNGDPARGYHFLHSALDAHSRLVYSEMLADERKDTASEFWKRANSW
Mb2836|M.bovis_AF2122/97 ---------------MRLAAALRPALASRGVPNAVYVDNGSPYVD-----
Rv2812|M.tuberculosis_H37Rv --LVPGYRWGHAEDTVRLAAALRPALASRGVPNAVYVDNGSPYVD-----
TH_3163|M.thermoresistible__bu RYVPALRACAGDADAQLVWETMLAGIAECGIPSMSLTDNGIVYTGRFHAH
: : :.. :
MMAR_1373|M.marinum_M GSSAEVLFDRVCVENG---------------IGHLLTAPRSPTTTGKVER
Mvan_0573|M.vanbaalenii_PYR-1 -YPAEVLFERICRENG---------------ITTRLTKPRSPTTTGKIER
MAV_3347|M.avium_104 FTTCGFTVRKVLTDNGSCYRSHAFRDALG-DIEHRRTRPYRPQTNGKVER
MSMEG_6600|M.smegmatis_MC2_155 FFEQGVIVRTVLTDNGSCYRSHSFREALGDDIEHRRTRPYRPQTNGKVER
Mb2836|M.bovis_AF2122/97 -----AWLLRACAKLG---------------VRLVHSTPGRPQGRGKIER
Rv2812|M.tuberculosis_H37Rv -----AWLLRACAKLG---------------VRLVHSTPGRPQGRGKIER
TH_3163|M.thermoresistible__bu ----QSAFETNLRALG---------------VQTINATPFHPQTCGKIER
. * : : * * **:**
MMAR_1373|M.marinum_M LHKTMRAEIFAEVDG--------VFDAIAELQAAIDRWVQYYNTARPHQS
Mvan_0573|M.vanbaalenii_PYR-1 FHKTLRRELLDSAG---------PFASIEVAQEAIDAWVHGYNHSRPHQS
MAV_3347|M.avium_104 FHRTLADEWAYARL----------YRSDAERCAEFPRWLHTYNHHRGHTA
MSMEG_6600|M.smegmatis_MC2_155 FHRTLADEWAYARL----------YTSDEQRCQEYPRWLHTYNHHRGHTA
Mb2836|M.bovis_AF2122/97 FFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSE
Rv2812|M.tuberculosis_H37Rv FFRTVREQFLVEITGEPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSE
TH_3163|M.thermoresistible__bu FWQTLKKWLTARDP----------ATTIAELNALLEQFRTFYNHQRPHRA
: :*: : *
MMAR_1373|M.marinum_M LGMVAPAARFALAAGPDLSVVEPVAAVPAEGQHPGALVDLRDAGVRRWVN
Mvan_0573|M.vanbaalenii_PYR-1 LGMATPATMFRPAP---IEVVPPVP-VDTEPLTPDVVVPPRPRRHLPPAT
MAV_3347|M.avium_104 LGGQPPATRVPNLSGQYI--------------------------------
MSMEG_6600|M.smegmatis_MC2_155 LGGQPPASRVPNLSGQYT--------------------------------
Mb2836|M.bovis_AF2122/97 TG-QTPLARWSAGG-------------PIPLPAPETLTEAFLWEEHRRVT
Rv2812|M.tuberculosis_H37Rv TG-QTPLARWSAGG-------------PIPLPAPETLTEAFLWEEHRRVT
TH_3163|M.thermoresistible__bu HRGALPAEVFAAGD--------------KARPADRPVPAPVIVSRHTVGP
*
MMAR_1373|M.marinum_M RHGSISVAG-------------------FRYRVPIVLAGEPVSVVVADNL
Mvan_0573|M.vanbaalenii_PYR-1 EHALIEVVHAVEWEAVLTPRARLLLPGDQQFKFTAALARREVTVWASDRS
MAV_3347|M.avium_104 --------------------------------------------------
MSMEG_6600|M.smegmatis_MC2_155 --------------------------------------------------
Mb2836|M.bovis_AF2122/97 KTATVSLHG-------------------NRYEIDPALVGRKVELVFDPFD
Rv2812|M.tuberculosis_H37Rv KTATVSLHG-------------------NRYEIDPALVGRKVELVFDPFD
TH_3163|M.thermoresistible__bu TSGYVFVAP-------------------YKVNVGLRWAGHECDIIRDGQH
MMAR_1373|M.marinum_M VSIYHHDVLVASHVQHRKTDN--TTGVVRQGRRTARPVTS-GIVVTRVVD
Mvan_0573|M.vanbaalenii_PYR-1 IHIVLDGTVIRTRPSRLSEHD--LRDLLRRGARIAGPEPARGAATIDILT
MAV_3347|M.avium_104 --------------------------------------------------
MSMEG_6600|M.smegmatis_MC2_155 --------------------------------------------------
Mb2836|M.bovis_AF2122/97 LTRIEVRLAGAPMGRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIE
Rv2812|M.tuberculosis_H37Rv LTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPKPSGIDYAQLIE
TH_3163|M.thermoresistible__bu ITILSGTTLVRSFTADPTRNYQRGDKTTRTYRTREPKPPS----------
MMAR_1373|M.marinum_M SNGDVSFAGTMYRAGRVWRGKQ---VEVSIVAESVQIACAGAIVRTHAIR
Mvan_0573|M.vanbaalenii_PYR-1 TSAVIEVARTVSRDGCIGLGGDKVLLESTLVGQRVTLRFEGALMHVVANG
MAV_3347|M.avium_104 --------------------------------------------------
MSMEG_6600|M.smegmatis_MC2_155 --------------------------------------------------
Mb2836|M.bovis_AF2122/97 TAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK------------
Rv2812|M.tuberculosis_H37Rv TAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK------------
TH_3163|M.thermoresistible__bu --------------------------------------------------
MMAR_1373|M.marinum_M ------------HDRAKEHGAFAT-----PHGRPRKPRQDAPEGPGVKAT
Mvan_0573|M.vanbaalenii_PYR-1 RLVKTMPAPLPPDQRATLRGARPTSEPLPPPAPPNRAMRRVAANGTITIA
MAV_3347|M.avium_104 --------------------------------------------------
MSMEG_6600|M.smegmatis_MC2_155 --------------------------------------------------
Mb2836|M.bovis_AF2122/97 --------------------------------------------------
Rv2812|M.tuberculosis_H37Rv --------------------------------------------------
TH_3163|M.thermoresistible__bu --------------------------------------------------
MMAR_1373|M.marinum_M PLRGRP----EGRALTPAP-------------------------------
Mvan_0573|M.vanbaalenii_PYR-1 GQRLRVGRSYQGRTVAVAIDDTVFRVFIDGTEICTHARRTDTDITIFKAY
MAV_3347|M.avium_104 --------------------------------------------------
MSMEG_6600|M.smegmatis_MC2_155 --------------------------------------------------
Mb2836|M.bovis_AF2122/97 --------------------------------------------------
Rv2812|M.tuberculosis_H37Rv --------------------------------------------------
TH_3163|M.thermoresistible__bu --------------------------------------------------
MMAR_1373|M.marinum_M ------
Mvan_0573|M.vanbaalenii_PYR-1 PRRHGT
MAV_3347|M.avium_104 ------
MSMEG_6600|M.smegmatis_MC2_155 ------
Mb2836|M.bovis_AF2122/97 ------
Rv2812|M.tuberculosis_H37Rv ------
TH_3163|M.thermoresistible__bu ------