For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMVRELASREHTDPFGRRVRISRQTIDRWI RGWRAGGFDALVPNPRQCTPRTPAEVLELAVALRRENPQRTAAAIRRILRTQLGWAPDERTLQRNFHRLG LTGATTGSAPAVFGRFEAEHPNALWTGDVLHGIRIDLRKTYLFAFLDDHSRLVPGYRWGHAEDTVRLAAA LRPALASRGVPNAVYVDNGSPYVDAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQFLVEITGE PDVVGRHYVADLAELNRLFTAWVETVYHRSVHSETGQTPLARWSAGGPIPLPAPETLTEAFLWEEHRRVT KTATVSLHGNRYEIDPALVGRKVELVFDPFDLTRIEVRLAGAPMRRAIPYHIGRHSHPKAKPETPTAPPK PSGIDYAQLIETAHAAELARGVNYTALTGAADQIPGQLDLLTGQEAQPK
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. tuberculosis H37Rv | Rv2812 | - | - | 100% (469) | PROBABLE TRANSPOSASE |
M. tuberculosis H37Rv | Rv3637 | - | 9e-05 | 29.41% (102) | transposase |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2836 | - | 1e-153 | 99.62% (265) | transposase |
M. gilvum PYR-GCK | Mflv_3183 | - | 2e-06 | 26.03% (219) | integrase catalytic subunit |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_4893c | - | 2e-09 | 29.33% (150) | integrase/transposase |
M. marinum M | MMAR_4106 | - | 1e-19 | 24.73% (372) | transposase for ISMyma05 |
M. avium 104 | - | - | - | - | - |
M. smegmatis MC2 155 | MSMEG_1249 | - | 5e-07 | 28.30% (159) | ISMsm7, transposase orfB |
M. thermoresistible (build 8) | TH_3163 | - | 2e-16 | 27.87% (305) | PUTATIVE putative Integrase, catalytic region |
M. ulcerans Agy99 | - | - | - | - | - |
M. vanbaalenii PYR-1 | Mvan_2928 | - | 1e-158 | 61.26% (475) | integrase catalytic subunit |
CLUSTAL 2.0.9 multiple sequence alignment Rv2812|M.tuberculosis_H37Rv -------------------------------------------------- Mb2836|M.bovis_AF2122/97 -------------------------------------------------- Mvan_2928|M.vanbaalenii_PYR-1 -------------------------------------------------- MMAR_4106|M.marinum_M -------------------------------------------------- TH_3163|M.thermoresistible__bu -------------------------------------------------- Mflv_3183|M.gilvum_PYR-GCK -------------------------------------------------- MAB_4893c|M.abscessus_ATCC_199 MTAGAERFGIGTRFVYEGQIIDVVQLRSTPKGPEVIASNGLEVMHVALKE MSMEG_1249|M.smegmatis_MC2_155 -------------------------------------------------- Rv2812|M.tuberculosis_H37Rv -------MAVGDDEEKVRAERARAIGLFRYQLIWEAADAAHSTKQRGKMV Mb2836|M.bovis_AF2122/97 -------------------------------------------------- Mvan_2928|M.vanbaalenii_PYR-1 ----------MSLEEHKRRERANAIGLFRYQLICPALEDGLSTRQRGRLV MMAR_4106|M.marinum_M -----------------------------------MLQELRMSEMRYRAV TH_3163|M.thermoresistible__bu -----------------------------------MAQKVTAMDIR-MAA Mflv_3183|M.gilvum_PYR-GCK -------MLWSVEALEGVPEEVADRARWWEQHIVEVLTGRRPESPPGQPI MAB_4893c|M.abscessus_ATCC_199 LLQSSRARLIPTEDGPSADDEQETAAMMLAQLSKAELKTVRERAAHVREV MSMEG_1249|M.smegmatis_MC2_155 -------------------------------MMYPLVLDLAADGVPVTVT Rv2812|M.tuberculosis_H37Rv RELASREHTDPF-----------GRRV-----------RISRQTIDRWIR Mb2836|M.bovis_AF2122/97 -------------------------------------------------- Mvan_2928|M.vanbaalenii_PYR-1 REIAERRHIDPF-----------GTQV-----------QIARATLDRWIR MMAR_4106|M.marinum_M LEVLDGAPVTAV-----------ARRF-----------GVSRQTVHAWLR TH_3163|M.thermoresistible__bu AVAGEIDNVAEF-----------CRRR-----------KISRQTFYKFRR Mflv_3183|M.gilvum_PYR-GCK RPEFDPAVRSLR-----------QRELTKLEELRAAGHDLALITLQRQRS MAB_4893c|M.abscessus_ATCC_199 LTGFRRGSEHIKEPDEPRPGFDPCGALADRYKAKAEQLNTSVRTVQRWVS MSMEG_1249|M.smegmatis_MC2_155 CRVLGFSTQAFY----------------------------RWRKAPVSQR Rv2812|M.tuberculosis_H37Rv GWRAG----GFDALVPNPRQCTPRTPAEVLELAVALR-----------RE Mb2836|M.bovis_AF2122/97 -------------------------------------------------- Mvan_2928|M.vanbaalenii_PYR-1 RYRGG----GFEALVPEPRRLATRTDTQVLELAASLK-----------RE MMAR_4106|M.marinum_M RYAEEGAALNLEDRSSRPHRCPHQMPVEVEARVLTLR-----------DA TH_3163|M.thermoresistible__bu RFRDSG-IEGLQELSRRPLTSPGQTPVEVEDLIVLRRK-------QLIEQ Mflv_3183|M.gilvum_PYR-GCK RYEAKGLLGLVDGRYLAKRPVLGRVDERVVAVVRRLIDNETELSTGTVSR MAB_4893c|M.abscessus_ATCC_199 NYRRFGEAGLVDHRKPRQLGVDQRWVDEALAVMVERTNE-----SRCTRK MSMEG_1249|M.smegmatis_MC2_155 DWDDAHLINAARNIHADDPAFGYRFIADELPAHGITAGE---------NR Rv2812|M.tuberculosis_H37Rv NPQR-TAAAIRRILRTQLGWAPDERTLQR---NFHRL-------GLTGAT Mb2836|M.bovis_AF2122/97 -------------------------------------------------- Mvan_2928|M.vanbaalenii_PYR-1 NPAR-TVAQVARILRTATGWAPSESTLLR---HFHRC-------ELMGPA MMAR_4106|M.marinum_M HPRWGPTRIVYELQRDVVPVVPGRSSVYR---ALVRN-------GRIDPA TH_3163|M.thermoresistible__bu GRDHGAQSIVWSFERDGVTVPSVSTVWQRGWQILSRR-------GAITPQ Mflv_3183|M.gilvum_PYR-GCK LQRKLEKALLAEYGPDDAPKAPSQATFYRLVKRLEEGKHTF-GSARTRRS MAB_4893c|M.abscessus_ATCC_199 LVMWEATKRIEQRYGTGSVQIPSKTTAYKVLKILETRYPAFRLSAARNRD MSMEG_1249|M.smegmatis_MC2_155 VARLCSQERIWSIFAKKRGLN-------------------------RRSG Rv2812|M.tuberculosis_H37Rv TG-SAPAVFGRFEAEHPNALWTGD------------------VLHGIRID Mb2836|M.bovis_AF2122/97 -------------------------------------------------- Mvan_2928|M.vanbaalenii_PYR-1 AG-QSAEVFGRFEAADPNELWVGD------------------ALHGPRVG MMAR_4106|M.marinum_M KRRRRRSDYKRWERGRPMELWQMD------------------VVGGLHLR TH_3163|M.thermoresistible__bu PQKRPKSATKRFVFSCPNECWQSD------------------WTG-WVLA Mflv_3183|M.gilvum_PYR-GCK LAKQPDGPFGTVTAARPGEMVEIDSTPLDVRVVLDDGV-VDRVELTAMVD MAB_4893c|M.abscessus_ATCC_199 IAGRPQEPYGKLKPTRPGEFMLMDTTPLDVFAYDPATSRSIRVELTVAMD MSMEG_1249|M.smegmatis_MC2_155 PPVHDDLVQRQFSTHAPNQVWLAD---------------------ITEHR Rv2812|M.tuberculosis_H37Rv L-RKTYLFAFLDDH-SRLVPGYRWGH-AEDTVRLAAALRPALASRG---- Mb2836|M.bovis_AF2122/97 -------------------------------MRLAAALRPALASRG---- Mvan_2928|M.vanbaalenii_PYR-1 D-RKTYLFAFLDDH-SRLVVGHRFGF-AEDTVRLAAALKPALAARG---- MMAR_4106|M.marinum_M DGIEVKVVTGIDDN-SRFVVSAKVVA-RATARPVCAALLEALRRHG---- TH_3163|M.thermoresistible__bu DGSPAGIAGSLDDH-SRYVPALRACAGDADAQLVWETMLAGIAECG---- Mflv_3183|M.gilvum_PYR-GCK NVTRSIPAAVLRPT-TKAVDAALLLAKALTPEPMRPGWSDALRLSRSVLP MAB_4893c|M.abscessus_ATCC_199 WYTRCITALRLTPVSTKAVDVAAVLYQLYRPLPAGPNWPDHACWPEHGVP MSMEG_1249|M.smegmatis_MC2_155 TDEGKLYLCALKDVYSNRIVGYSIDSRMKSSLAVAALEHAVALRSP---- Rv2812|M.tuberculosis_H37Rv ------------------------------------VPNAVYVDNGSPYV Mb2836|M.bovis_AF2122/97 ------------------------------------VPNAVYVDNGSPYV Mvan_2928|M.vanbaalenii_PYR-1 ------------------------------------VPAGIYVDNGSAFV MMAR_4106|M.marinum_M ------------------------------------VPEQILTDNGKVFT TH_3163|M.thermoresistible__bu ------------------------------------IPSMSLTDNGIVYT Mflv_3183|M.gilvum_PYR-GCK HRRLTDIDQRLAD----------------AAARPVIAPETIVCDHGKAFL MAB_4893c|M.abscessus_ATCC_199 RSVLIDPDAIDYTGAKYPQKHEQQAGPPTRSGGPAIVPETIVIDHGKIYV MSMEG_1249|M.smegmatis_MC2_155 ------------------------------------VATIVHSDRGSQFR . *.* : Rv2812|M.tuberculosis_H37Rv ----------DAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQF Mb2836|M.bovis_AF2122/97 ----------DAWLLRACAKLGVRLVHSTPGRPQGRGKIERFFRTVREQF Mvan_2928|M.vanbaalenii_PYR-1 ----------DAWLLRACAKLGIRLVHSAPGRPQGRGKIERFFRTVREQF MMAR_4106|M.marinum_M GRFGPGGSSAEVLFDRVCVENGIGHLLTAPRSPTTTGKVERLHKTMRAEI TH_3163|M.thermoresistible__bu G----RFHAHQSAFETNLRALGVQTINATPFHPQTCGKIERFWQTLKKWL Mflv_3183|M.gilvum_PYR-GCK S----------KTFEQACCSLGINLQPAHPDQPTDKPKVERTLQSVGTLF MAB_4893c|M.abscessus_ATCC_199 S----------EHINSVCARMGISIQPVRLGEGRDKGPVERFFRSVRQGV MSMEG_1249|M.smegmatis_MC2_155 S----------RKFVHALSHNGLHGSMGRVGACGDNAAMESFFALLQRNV : *: :* : . Rv2812|M.tuberculosis_H37Rv LVEITG--------EPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSET Mb2836|M.bovis_AF2122/97 LVEITG--------EPDVVGRHYVADLAELNRLFTAWVETVYHRSVHSET Mvan_2928|M.vanbaalenii_PYR-1 LVEVTDTT----AEDLTAAGVDHTGALLELNRLFMAWVETEYHRRTHTET MMAR_4106|M.marinum_M FAEVDG----------------VFDAIAELQAAIDRWVQYYNTARPHQSL TH_3163|M.thermoresistible__bu TARDPA------------------TTIAELNALLEQFRTFYNHQRPHRAH Mflv_3183|M.gilvum_PYR-GCK AQYVAGYVGSSVERRGKNADQDAVWSLVELQALLDEWLVAVWQNRPHDGL MAB_4893c|M.abscessus_ATCC_199 LEFLPGYAGPDIASRGLDPQAQAELYIDELEELLRQWVAVYYHHRPHSGL MSMEG_1249|M.smegmatis_MC2_155 LDRRRWT------------------TRAELRLAIVTWIERTYHRRRR--- **. : : : Rv2812|M.tuberculosis_H37Rv GQT--------PLARWSAG--------GPIP-LPAPETLTEAFLWEEHR- Mb2836|M.bovis_AF2122/97 GQT--------PLARWSAG--------GPIP-LPAPETLTEAFLWEEHR- Mvan_2928|M.vanbaalenii_PYR-1 GQS--------PLARWETGW----DRLGALPALPTAADLTEAFLWSEFR- MMAR_4106|M.marinum_M GMVA-------PAARFALAAGPDLSVVEPVAAVPAEGQHPGALVDLRDAG TH_3163|M.thermoresistible__bu RGAL-------PAEVFAAG----------DKARPADRPVPAPVIVSRHT- Mflv_3183|M.gilvum_PYR-GCK RDPVTPGKALTPNEKFAALVEVAGYVPVPLSADAYIELLPATWRTIGSAG MAB_4893c|M.abscessus_ATCC_199 VDPHLPSARMSPAQMYEHGLAGAGFIEIPRDPDLAYEFLRPELRTIQPYG MSMEG_1249|M.smegmatis_MC2_155 -------------------------------------------------- Rv2812|M.tuberculosis_H37Rv ---RVTKTATVSLHGN-RYEIDPALVG----RKVELVFDPFDLTRIEVRL Mb2836|M.bovis_AF2122/97 ---RVTKTATVSLHGN-RYEIDPALVG----RKVELVFDPFDLTRIEVRL Mvan_2928|M.vanbaalenii_PYR-1 ---VVTKTATVSLHSN-IYRVDPALAG----RRVELVFSPFDLQAIEVRH MMAR_4106|M.marinum_M VRRWVNRHGSISVAGF-RYRVPIVLAG----EPVSVVVADN---LVSIYH TH_3163|M.thermoresistible__bu ---VGPTSGYVFVAPY-KVNVGLRWAG----HECDIIRDGQ---HITILS Mflv_3183|M.gilvum_PYR-GCK IRVNHRTYDARALNPYRRVDSGVRSRN----GRWEVHYDPYDVSQIWVRN MAB_4893c|M.abscessus_ATCC_199 VQVDNRIYRGLPQDETHILGELANLPSPYGRHRWPVYSDPDDIRYVYVRH MSMEG_1249|M.smegmatis_MC2_155 ----QRALGRLTPIEFELLHTPVATAA----------------------- Rv2812|M.tuberculosis_H37Rv AGAPMRRAIPYHIGRHSHPKAKP----ETP-TAPPKPSGIDYAQLIETAH Mb2836|M.bovis_AF2122/97 AGAPMGRAIPYHIGRHSHPKAKP----ETP-TAPPKPSGIDYAQLIETAH Mvan_2928|M.vanbaalenii_PYR-1 QDRSYGPAVAHTITRHAHPKARP----ETRGEAPPAATGIDYLALTAANH MMAR_4106|M.marinum_M HDVLVASHVQHRKTDNTTGVVRQ----GRR-TARPVTSGIVVTRVVDSNG TH_3163|M.thermoresistible__bu GTTLVRSFTADPTRNYQRGDKTT----RTYRTREPKPPS----------- Mflv_3183|M.gilvum_PYR-GCK HHDDGWITATWTHMRTAAVPFGD----TVWKQAQAIVAERGADPVTEAEI MAB_4893c|M.abscessus_ATCC_199 PDNRRWHTLTWELADALNMPMSDERLSYLRRQAAQQHEEFDDRLILDELL MSMEG_1249|M.smegmatis_MC2_155 -------------------------------------------------- Rv2812|M.tuberculosis_H37Rv A---AELARG--VNYTALTG---------AADQIPGQLDL---------- Mb2836|M.bovis_AF2122/97 A---AELARG--VNYTALTG---------AADQIPGQLDL---------- Mvan_2928|M.vanbaalenii_PYR-1 H---AQLRDDERIGYHALYGTQAATDDTAGDDQVLGQLSIT-----DLEP MMAR_4106|M.marinum_M D---VSFAGTMYRAGRVWRGKQVEVSIVAESVQIACAGAIVRTHAIRHDR TH_3163|M.thermoresistible__bu -------------------------------------------------- Mflv_3183|M.gilvum_PYR-GCK A---AAADALLDRAERGPDTQQDPPAARRAAARARSIPEPS----WPHPS MAB_4893c|M.abscessus_ATCC_199 SGWNLSMGTSTTEKRIALRMSRPHATLSYQIQQIGPRPSRPETGQLAPDT MSMEG_1249|M.smegmatis_MC2_155 -------------------------------------------------- Rv2812|M.tuberculosis_H37Rv --LTGQEAQPK--------------------------------------- Mb2836|M.bovis_AF2122/97 --LTGQEAQPK--------------------------------------- Mvan_2928|M.vanbaalenii_PYR-1 GGRTGASADHEGEVSA---------------------------------- MMAR_4106|M.marinum_M AKEHGAFATPHGRPRKPRQDAPDGPGAKATPLRGRPEGRALTPAP----- TH_3163|M.thermoresistible__bu -------------------------------------------------- Mflv_3183|M.gilvum_PYR-GCK VEGTNQNQEPSEVSTDRPANSDDDDLADVIPLPVFDARKEAEQWHW---- MAB_4893c|M.abscessus_ATCC_199 APEPLLAQGTSAIAADIQIEGTAARCRAAAQASDDDDDDELDDFYAGALE MSMEG_1249|M.smegmatis_MC2_155 -------------------------------------------------- Rv2812|M.tuberculosis_H37Rv -- Mb2836|M.bovis_AF2122/97 -- Mvan_2928|M.vanbaalenii_PYR-1 -- MMAR_4106|M.marinum_M -- TH_3163|M.thermoresistible__bu -- Mflv_3183|M.gilvum_PYR-GCK -- MAB_4893c|M.abscessus_ATCC_199 EA MSMEG_1249|M.smegmatis_MC2_155 --