For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. marinum M MMAR_4623 (-)

annotation: penicillin binding protein
coordinates: 5671591 - 5673174
length: 527

TKRAATTAVVMMFLALVGCAPKQSISNPPSTPSQLPPNEVSGIDIPPGRIDEAVAKVDGLVAELMKSTGI
PGMAVAIVHGGKTLYAKGFGVRDVSKGDGQDNKVDTDTVFQLASMSKPIGATVVAHEVSTNVVSWDTPVV
SKLPEFALSDPYVTDHATIADLYSHRSGLPDHAGDALEDLGYDTTQVLERLKYLPLDPFRISYAYTNFGV
TAAADAVAAAAGKAWPDLSEEVLYRPLGMTSTSSRFADFLARPNHAVNHIKVGDRWEARFQRDPDAQTPA
GGVSSSLNDMAHWLTMVLANGEYNGQQIVSPEALLPAITPQVISSAARSPKARAGFYGHGFTVSVSSAGR
TQYGHSGAFGLGAATNFVVLPSEDIAIVALTNAAPYGIPEALTAQFMDLVQYGEVREDWTNLYRQQMSPI
NTPEGSLVGKQPPVNPEPARPPSDYVGVYANDYWGPATVTERDGQLQLSMGPKNQTFDLTHWDGDTFTFA
LSTENALPGSISKATFAGDTLNLEYFDSNKLGTFTR*
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. marinum MMMAR_4623--100% (527)penicillin binding protein
M. marinum MMMAR_2827-3e-1327.19% (228) lipoprotein
M. marinum MMMAR_3399-3e-1225.51% (247) hypothetical protein MMAR_3399

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb0931-0.077.71% (516) hypothetical protein Mb0931
M. gilvum PYR-GCKMflv_1757-1e-17556.39% (532) beta-lactamase
M. tuberculosis H37RvRv0907-0.078.39% (509) hypothetical protein Rv0907
M. leprae Br4923MLBr_01782-6e-0627.17% (173) hypothetical protein MLBr_01782
M. abscessus ATCC 19977MAB_2833-7e-1223.04% (369) beta-lactamase
M. avium 104MAV_1030-0.071.51% (530) penicillin-binding protein 4
M. smegmatis MC2 155MSMEG_5637-0.062.50% (528) penicillin-binding protein 4
M. thermoresistible (build 8)TH_0096-0.060.72% (527) penicillin-binding protein 4
M. ulcerans Agy99MUL_1772-2e-1022.86% (315) beta-lactamase
M. vanbaalenii PYR-1Mvan_4990-1e-17858.08% (532) beta-lactamase

CLUSTAL 2.0.9 multiple sequence alignment


Mb0931|M.bovis_AF2122/97            ---------MMLLT----------------LTGCGSTHQALGPPSGL---
Rv0907|M.tuberculosis_H37Rv         ---------MATICGHDQTSGNGRHGDVADVNGCGSTHQALGPPSGL---
MMAR_4623|M.marinum_M               ---------MTKRAAT-----TAVVMMFLALVGCAPKQSISNPPSTP---
MAV_1030|M.avium_104                ---------MSKRAAV-------LTAVLLGLTGCGSAQQPAGAPPRP---
Mflv_1757|M.gilvum_PYR-GCK          ---MK----SRVGAVA-------LVMAVALLAGCAAESTEPAASSTPAPG
Mvan_4990|M.vanbaalenii_PYR-1       ---MK----PRARVAA-------LALTAALLAGCGTEGAEPAASSTPAPS
MSMEG_5637|M.smegmatis_MC2_155      MYSMRRSVFARAVGSA-------LVVGLAVSGCAGGDDTADAQRSAQPSQ
TH_0096|M.thermoresistible__bu      ---------VLKRFAA-------VLTALVLLAGCRSGDDASTAHPS----
MAB_2833|M.abscessus_ATCC_1997      ------------------------------MAEP----------------
MUL_1772|M.ulcerans_Agy99           ----------------------------MGVARPRWRGPRAAWFAGARKP
MLBr_01782|M.leprae_Br4923          --------------------------------------------------
                                                                                      

Mb0931|M.bovis_AF2122/97            --PDASPNERSAIQIPAGRIDDAVAKVDGLVGELMQNTGIPGMAVAIVHG
Rv0907|M.tuberculosis_H37Rv         --PDASPNERSAIQIPAGRIDDAVAKVDGLVGELMQNTGIPGMAVAIVHG
MMAR_4623|M.marinum_M               --SQLPPNEVSGIDIPPGRIDEAVAKVDGLVAELMKSTGIPGMAVAIVHG
MAV_1030|M.avium_104                --SDVSPNQVSALAIPAGRIDEAVAKVDGLVADLMRSSGIPGMAVAIVHG
Mflv_1757|M.gilvum_PYR-GCK          PLSDVPPPLVPAMPLPENAVANAVAKLDGLAEDLMSTSGVPGMAVAVVHQ
Mvan_4990|M.vanbaalenii_PYR-1       PASDVPPPLVPAMPLPENAVADAVAKLDGLAEDLMSKSGIPGMAVAVVHG
MSMEG_5637|M.smegmatis_MC2_155      TFADEPPPLVPAMALPENAVENAVAKLDGIAEDLMRSSGIPGMAVAVVHG
TH_0096|M.thermoresistible__bu      --SDLPPPLVAAVDLPADAVANAVARLDGLAADLLEQSGIPGLAVAVVHG
MAB_2833|M.abscessus_ATCC_1997      ----------------DSTFDAALAPIR----AAIDDRILAGAVTLVWQG
MUL_1772|M.ulcerans_Agy99           SDGRRLTRRPPAANLNPVNLDANQADIR----EVCDAGLLSGAVTVVWQH
MLBr_01782|M.leprae_Br4923          ----------------------------MVALDALDDWPVPTTAAAVVGP
                                                                           :.  .. :   

Mb0931|M.bovis_AF2122/97            GKTLYAKGFGVRDVGKGGGPDNKVDADTVFQLASVSKSVGATVVAHAVTD
Rv0907|M.tuberculosis_H37Rv         GKTLYAKGFGVRDVGKGGGPDNKVDADTVFQLASVSKSVGATVVAHAVTD
MMAR_4623|M.marinum_M               GKTLYAKGFGVRDVSKGDGQDNKVDTDTVFQLASMSKPIGATVVAHEVST
MAV_1030|M.avium_104                GKVLYAKGFGVKDVTSGQGRDNAVDTDTVFQLASVSKSVGATVVAHEVSD
Mflv_1757|M.gilvum_PYR-GCK          GKTVYAKGFGVKNNTQSDSPENRVDADTVFQLASLSKPLSATVVAALVGQ
Mvan_4990|M.vanbaalenii_PYR-1       GKAVYAKGFGVRNNTMSDEPHNEVDADTVFQLASLSKPLSATAVAALVGQ
MSMEG_5637|M.smegmatis_MC2_155      GKTVYAKGFGVRDVRNGDVESNRVDPDTVFQLASLSKPIAATVVAHQVGT
TH_0096|M.thermoresistible__bu      GKTVYAKGFGVKDIRTGDP----VGADTVFQLASLSKPIGATVVAHQVGT
MAB_2833|M.abscessus_ATCC_1997      GQLRHLGATGYRDIDAGLS----MAENTIFRIASMTKPIISAATMNLVDD
MUL_1772|M.ulcerans_Agy99           GEVLQVNEIGYRDVEAGLP----MQRDTLFRIASMTKPVTVAAAMSMVDE
MLBr_01782|M.leprae_Br4923          TGVLAARG----------------DTEQVFPLASVTKPLVARAVQIAIEE
                                                              : :* :**::*.:   ..   :  

Mb0931|M.bovis_AF2122/97            NVVTWDTPVVSKLPWF----ALRDP--------YVTGQVTIADLYSHRSG
Rv0907|M.tuberculosis_H37Rv         NVVTWDTPVVSKLPWF----ALRDP--------YVTGQVTIADLYSHRSG
MMAR_4623|M.marinum_M               NVVSWDTPVVSKLPEF----ALSDP--------YVTDHATIADLYSHRSG
MAV_1030|M.avium_104                HVVGWDTPVVSTLPWF----ALGDP--------YVTGHVTVGDLYSHRSG
Mflv_1757|M.gilvum_PYR-GCK          DQVGWDTPVVSRLPWF----ALSDP--------TTTQMVTVGDMFSHRSG
Mvan_4990|M.vanbaalenii_PYR-1       NQVSWDTPIVSRLPWF----ALSDP--------AVTQMVTVGDMFSHRSG
MSMEG_5637|M.smegmatis_MC2_155      GAIGWDTPVVEHLPWF----ALSDP--------VTTRMVTVGDLFAHRSG
TH_0096|M.thermoresistible__bu      GAISWDTPVISRLPWF----RLSDP--------VVTERVTIGDMYAHRSG
MAB_2833|M.abscessus_ATCC_1997      GTIRLSDPITTWLPEFSDMRVLKNPEGPLDDTFRAPRLITVEDLLTHRSG
MUL_1772|M.ulcerans_Agy99           GKIALRDPITRWAPELRDIRVLDDPHGPLDRTHPTRRPILIEDLLTHTSG
MLBr_01782|M.leprae_Br4923          GVVDLDTVAGP-------------------------PGSTIRHLLAHASG
                                      :                                     : .: :* **

Mb0931|M.bovis_AF2122/97            LP---DHAGDLLEDLG-------YDRRQVLQRLKYLPLAPFRISYAYTNF
Rv0907|M.tuberculosis_H37Rv         LP---DHAGDLLEDLG-------YDRRQVLQRLKYLPLAPFRISYAYTNF
MMAR_4623|M.marinum_M               LP---DHAGDALEDLG-------YDTTQVLERLKYLPLDPFRISYAYTNF
MAV_1030|M.avium_104                LP---DHAGDKLEDLG-------YGRRQICERLRLLPLRPFRNSYAYTNY
Mflv_1757|M.gilvum_PYR-GCK          LP---DHAGDQLEDLG-------YDRRQVLDRLRQLPLAQFRTSYAYTNF
Mvan_4990|M.vanbaalenii_PYR-1       LP---DHAGDQLEDLG-------YDRRQVLERLRQLPLDQFRTSYAYTNF
MSMEG_5637|M.smegmatis_MC2_155      LP---DHAGDQLEDLG-------YDRRYILEHLRALPLDPFRNSYAYTNF
TH_0096|M.thermoresistible__bu      LP---DHAGDLLEDLG-------YDRRQVLEKLAQLPLAPFRISYAYTNF
MAB_2833|M.abscessus_ATCC_1997      LTYDFISTGPIAKAYHPLHTAAFREPDEWLAAIAALPLVYPPGERFHYSH
MUL_1772|M.ulcerans_Agy99           LAYSFSVSGDISRAYMRLPFG--HGSDAWLAELAALPLVHQPGERVTYSH
MLBr_01782|M.leprae_Br4923          LA-----------------------------MHSKYVMAPPGTRRIYSNY
                                    *.                                   :          ..

Mb0931|M.bovis_AF2122/97            GVTAAAEAVAAAAGQSWEDLSDEVLYRPLGMGSTSSRFTDFLARPNHAVN
Rv0907|M.tuberculosis_H37Rv         GVTAAAEAVAAAAGQSWEDLSDEVLYRPLGMGSTSSRFTDFLARPNHAVN
MMAR_4623|M.marinum_M               GVTAAADAVAAAAGKAWPDLSEEVLYRPLGMTSTSSRFADFLARPNHAVN
MAV_1030|M.avium_104                GITAAAEAVAAAAGKTWEELSDEVLYRPLGMTSTSSRFADFLARPNRAVN
Mflv_1757|M.gilvum_PYR-GCK          GLTAGAEAVATGAGKSWEDLAADTLLRPLGMGVTSYRFEDYASRRDRAVG
Mvan_4990|M.vanbaalenii_PYR-1       GLTAGAEAVATGAGKSWEDLAADTLLRPLGMGATSYRFSDYESRRDRAVG
MSMEG_5637|M.smegmatis_MC2_155      GLTAAAEAVAAAAGRSWEDLARDVLYRPLGMDSTSSRFADYEATQNRAVG
TH_0096|M.thermoresistible__bu      GXTAAAEAVAADAGMPWEELSGRVLYEPLGMASTSSRFADYQARADRAVG
MAB_2833|M.abscessus_ATCC_1997      STDVLGLLIARAAGLPLNTLLRQRILDPLGMNDTDFFVPEHKAARLARLY
MUL_1772|M.ulcerans_Agy99           AIDLLGVIMSRIDDKPFYQVLDERILGPAGMTDTGFFVSTQAQRRAATMY
MLBr_01782|M.leprae_Br4923          GFRVLAETVQREAGIGFSRYLTEAVLEPLAMTATKLEDGTWAAG------
                                    .    .  :    .          :  * .*  *                

Mb0931|M.bovis_AF2122/97            HVKVADRWEARYQRDPDAQS--------PAGGVSSSLNDMTHWLAMVLAD
Rv0907|M.tuberculosis_H37Rv         HVKVADRWEARYQRDPDAQS--------PAGGVSSSLNDMTHWLAMVLAD
MMAR_4623|M.marinum_M               HIKVGDRWEARFQRDPDAQT--------PAGGVSSSLNDMAHWLTMVLAN
MAV_1030|M.avium_104                HIKIGDSWQARFQRNPDAQS--------PAGGVSSSVRDMARWLMMLLDN
Mflv_1757|M.gilvum_PYR-GCK          HIRIDDGYQPRYVRDAQAQS--------PAGGASSSVNDMTRWMAMVLAE
Mvan_4990|M.vanbaalenii_PYR-1       HIRIDGGYQPRFVRDAQAQS--------PAGGASSSVNDMTRWMAMVLAD
MSMEG_5637|M.smegmatis_MC2_155      HIRVDGRYEPQYVRNADAQT--------PAGGVSASVDDMTRWLAMVLGD
TH_0096|M.thermoresistible__bu      HIHVDGGYQPFYLRDPDAES--------PAGGVSSSVNDVARWLAMVLGD
MAB_2833|M.abscessus_ATCC_1997      GLGDDDTIVAADSGYLTAMPTSAPALCRGGGALASTAHDYLTFARALLGG
MUL_1772|M.ulcerans_Agy99           RLDELDQLRHDVMGPPHVRP---PSFCNAGGGLWSTADDYLRFVRLLLGD
MLBr_01782|M.leprae_Br4923          ------------------------------FGATSTVADLAAFANDLLRP
                                                                   .  ::  *   :   :*  

Mb0931|M.bovis_AF2122/97            GVYNGRRITSPEALLLVYTPQVISRHPVSPRARASFYGYGFNVGVTSSGR
Rv0907|M.tuberculosis_H37Rv         GVYNGRRITSPEALLPVYTPQVISRHPVSPRARASFYGYGFNVGVTSSGR
MMAR_4623|M.marinum_M               GEYNGQQIVSPEALLPAITPQVISSAARSPKARAGFYGHGFTVSVSSAGR
MAV_1030|M.avium_104                GTHDGQHIASPEALLPALSPQVVSAPATTPKARTGFYGYGFNTSVDASGR
Mflv_1757|M.gilvum_PYR-GCK          GRHDGNALIDPQALLPAISPQVTSAPPTEPAMRPGFYGYGFNVGTTSAAR
Mvan_4990|M.vanbaalenii_PYR-1       GRHDGNQLIDPTALLPAITPQVTSSRGSEPAMRSGFYGYGFNVGTTSAAR
MSMEG_5637|M.smegmatis_MC2_155      GVFEGERIVEESTLLPAITPQVVSDRASQPAMRSGFYGYGFNVGTTSAAR
TH_0096|M.thermoresistible__bu      GSFEGRRIVDPDALLPALTPQIVSSPATEPAMRSGFYGYGFNVGITSAAR
MAB_2833|M.abscessus_ATCC_1997      GQADGVRILSPESTQALRTNRLTPAQR-----RLPSFGIPYWTGRG----
MUL_1772|M.ulcerans_Agy99           GTIDGVRVLSPESVRLMRTDRLSDEHK-----RHNFLGAPFWVGRG----
MLBr_01782|M.leprae_Br4923          ATVSAQIHAEATSVQFPDLDGVLPGHGVQ---RPNDWGLGYEIKNS----
                                    .  ..    .  :        :          *    *  :         

Mb0931|M.bovis_AF2122/97            TEYSHSGAFGLGAAANFVVLPSEDLAIIALTNAGPIGVPETLTAEFMDLV
Rv0907|M.tuberculosis_H37Rv         TEYSHSGAFGLGAAANFVVLPSEDLAIIALTNAGPIGVPETLTAEFMDLV
MMAR_4623|M.marinum_M               TQYGHSGAFGLGAATNFVVLPSEDIAIVALTNAAPYGIPEALTAQFMDLV
MAV_1030|M.avium_104                TEYSHSGAFDLGAATNFVVLPSEDLAIIALTNAAPYGIPETLTAEFMDLV
Mflv_1757|M.gilvum_PYR-GCK          TQLSHSGAFELGAATNVLFLPSADVAIIALTNATPTGVPETLTAQFADLV
Mvan_4990|M.vanbaalenii_PYR-1       TQLSHSGAFELGAATNVLFLPSADVAIVALTNATPTGIPETLTAQFADLV
MSMEG_5637|M.smegmatis_MC2_155      TQLSHSGAFELGAATNFVILPSADVGIVALTNGTPAGIPETLTAEFADLV
TH_0096|M.thermoresistible__bu      TELSHSGAFELGTGTNFVILPSADAGIVALTNATPSGVAEALTAQFADLV
MAB_2833|M.abscessus_ATCC_1997      ----------FGLGLSVVMDPNE-AALFGPGGTGTFGWPGAFGTWWH---
MUL_1772|M.ulcerans_Agy99           ----------FGLNLSVVTDPVQSTPLFGPGGLGTFSWPGAYGTWWQ---
MLBr_01782|M.leprae_Br4923          ------------------KLPHWTGTLNSARTYGHFGQSGGF--------
                                                        *     : .       . .           

Mb0931|M.bovis_AF2122/97            QYGQVREDWAALYKKAFAPLNELAGSLVGKQSPANPAPSRPLNDYVGVYA
Rv0907|M.tuberculosis_H37Rv         QYGQVREDWAALYKKAFAPLNELAGSLVGKQSPANPAPSRPLNDYVGVYA
MMAR_4623|M.marinum_M               QYGEVREDWTNLYRQQMSPINTPEGSLVGKQPPVNPEPARPPSDYVGVYA
MAV_1030|M.avium_104                QYGQIREDWAALYRKAIGWLNNPLGSLVGKQPPSAPAPARPLRDYTGVYA
Mflv_1757|M.gilvum_PYR-GCK          QFGEIRQDWAALYGKAFADMDKPVGSLVGQQRHVNAQTHGPLDSYTGVYG
Mvan_4990|M.vanbaalenii_PYR-1       QFGEIRQDWYALYAKAFEDMDKPVGSLVGQQRPANAQAHGPLAAYTGVYR
MSMEG_5637|M.smegmatis_MC2_155      QFGEVRQDWRKLYADAFASMDGPEGELVGKKPPAVPAPARPLPDYVGVYR
TH_0096|M.thermoresistible__bu      QFGEIREDWYRLYRELMAPLEQPQGSLVGRPRPADPAPPAPLSTYVGTYH
MAB_2833|M.abscessus_ATCC_1997      --ADPKADAILMFLPQWR------------MPELDPKAALARTST---IR
MUL_1772|M.ulcerans_Agy99           --ADPGADLILLYLIQH-------------CPDLSVNAAAAVAGNPGLAK
MLBr_01782|M.leprae_Br4923          ---------------------------IWADPEAELALVVLTDRDFGEWA
                                                                                      

Mb0931|M.bovis_AF2122/97            NDYWGPATVTYHDGQLRLSLGPKN--------QTFDLTHWDGDTFTFTLS
Rv0907|M.tuberculosis_H37Rv         NDYWGPATVTYHDGQLRLSLGPKN--------QTFDLTHWDGDTFTFTLS
MMAR_4623|M.marinum_M               NDYWGPATVTERDGQLQLSMGPKN--------QTFDLTHWDGDTFTFALS
MAV_1030|M.avium_104                NDYWGPAVITEHDGALQLTMGPQH--------RTATLTHWDGDTFTFPLT
Mflv_1757|M.gilvum_PYR-GCK          NDYWGPATVTERDGRLQLALGPR---------GVFELDAWDGNVFVFPVS
Mvan_4990|M.vanbaalenii_PYR-1       NDYWGPATVTERDGHLELALGPR---------GVFKLQPWDGNVFTFPVS
MSMEG_5637|M.smegmatis_MC2_155      NDYWGPATVTEQDGALQLALGPK---------FKARLTHWDGDVFTFRFV
TH_0096|M.thermoresistible__bu      NDYWGPARVTERDGKLVLDMGPPDARPQPGAPDEFPLTHWDGNVFTFTLV
MAB_2833|M.abscessus_ATCC_1997      LQLLHVQFGQAVYAAL----------------------------------
MUL_1772|M.ulcerans_Agy99           LRTAQPRFVRRTYRALGL--------------------------------
MLBr_01782|M.leprae_Br4923          LQLWPAISDAVISEYAR---------------------------------
                                                                                      

Mb0931|M.bovis_AF2122/97            TENALPGSISKATFAG---DTLNLEYYDADKLGTFTR
Rv0907|M.tuberculosis_H37Rv         TENALPGSISKATFAG---DTLNLEYYDADKLGTFTR
MMAR_4623|M.marinum_M               TENALPGSISKATFAG---DTLNLEYFDSNKLGTFTR
MAV_1030|M.avium_104                GENAPPGTVSTATFTGSPAARLNLEYYDTDQLGTFTR
Mflv_1757|M.gilvum_PYR-GCK          SENAPPGTVSAATFDG---GALTLEYFDQEGNGVFVR
Mvan_4990|M.vanbaalenii_PYR-1       SENAPPGTVSAATFDA---GSLTLEYFDDEGKGVFTR
MSMEG_5637|M.smegmatis_MC2_155      SENAPPGTISKATFAG---DKLTLEYFDEDGTGTFTR
TH_0096|M.thermoresistible__bu      TENAPPGTISKATFDG---DRLTLEYYDDVHDGVFVK
MAB_2833|M.abscessus_ATCC_1997      -------------------------------------
MUL_1772|M.ulcerans_Agy99           -------------------------------------
MLBr_01782|M.leprae_Br4923          -------------------------------------