For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
AEPLAVDPAGLGAAGTRLRGLVFPTPPAPIVAAGTDALSVAINTAMPNIESSVTDLLPSAKADMANTASS MATAADIYTKVDESLGENLSQHQFRGSAPILTGSTVTDQAGQFVDSMATSAWQWADRARQGVETLIDQLS PQISEVAAQVAEAGPQLAQLGSQAAFVAQYASPMAQSIGQSTQQIVSTASQAGGAAPAQHGLLVDDTKND DADDDRDAKAGADGAGAAPGSQTLGGAPIEGGTGTTADNQSAGPDVTVL*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_4352 | - | - | 100% (260) | hypothetical protein MMAR_4352 |
| M. marinum M | MMAR_5453 | - | 2e-47 | 45.77% (284) | hypothetical protein MMAR_5453 |
| M. marinum M | MMAR_1328 | - | 3e-23 | 37.13% (202) | hypothetical protein MMAR_1328 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3908 | - | 2e-45 | 41.30% (276) | hypothetical protein Mb3908 |
| M. gilvum PYR-GCK | Mflv_0763 | - | 3e-14 | 31.58% (190) | hypothetical protein Mflv_0763 |
| M. tuberculosis H37Rv | Rv3878 | - | 2e-45 | 41.30% (276) | hypothetical protein Rv3878 |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. avium 104 | - | - | - | - | - |
| M. smegmatis MC2 155 | MSMEG_0069 | - | 3e-10 | 29.00% (231) | translation initiation factor IF-2 protein |
| M. thermoresistible (build 8) | TH_4343 | - | 1e-05 | 28.12% (64) | PUTATIVE - |
| M. ulcerans Agy99 | MUL_4594 | - | 1e-139 | 97.69% (260) | hypothetical protein MUL_4594 |
| M. vanbaalenii PYR-1 | Mvan_0082 | - | 8e-13 | 27.80% (205) | hypothetical protein Mvan_0082 |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_0763|M.gilvum_PYR-GCK MVSGGLPPLSVDPTQLSAAGGALKSSALDLPEAPAPFMPVGTDPLSVAII
Mvan_0082|M.vanbaalenii_PYR-1 MATGGTPPLSVDPEELSAAGGALLDSARELPQAPAPFNPVGTDPLSAAII
MMAR_4352|M.marinum_M ----MAEPLAVDPAGLGAAGTRLRG--LVFPTPPAPIVAAGTDALSVAIN
MUL_4594|M.ulcerans_Agy99 ----MAEPLAVDPAGLGAVGTRLRG--LVFPTPPALIVAAGTDALSVAIN
Mb3908|M.bovis_AF2122/97 ----MAEPLAVDPTGLSAAAAKLAG--LVFPQPPAPIAVSGTDSVVAAIN
Rv3878|M.tuberculosis_H37Rv ----MAEPLAVDPTGLSAAAAKLAG--LVFPQPPAPIAVSGTDSVVAAIN
MSMEG_0069|M.smegmatis_MC2_155 ----------------------MEASARAIPEPPDPFKTEGTDPLSKALA
TH_4343|M.thermoresistible__bu --------MAIPELKVNESALHWDPAEVMVPSVPA--IPAGEDPMSQVVA
.* * * *.: .:
Mflv_0763|M.gilvum_PYR-GCK GQIPAIETPIATQLPLIKAEATTTASNVEDAAQAYAATDEQNSAAIDQVM
Mvan_0082|M.vanbaalenii_PYR-1 GQIPAVEAPIATQLPLIQAQATSTAQNVVSAAQVYAETDARNGAAIHEQM
MMAR_4352|M.marinum_M TAMPNIESSVTDLLPSAKADMANTASSMATAADIYTKVDESLGENLSQHQ
MUL_4594|M.ulcerans_Agy99 TAMPNIESSVTDLLPSAKADMANTASSMATAADIYTKVDESLGENLSQHQ
Mb3908|M.bovis_AF2122/97 KTMPSIESLVSDGLPGVKAALTRTASNMNAAADVYAKTDQSLGTSLSQYA
Rv3878|M.tuberculosis_H37Rv ETMPSIESLVSDGLPGVKAALTRTASNMNAAADVYAKTDQSLGTSLSQYA
MSMEG_0069|M.smegmatis_MC2_155 DKTWQVEAPFIEGIGKTKAEAQETARRIQEAADKYEQSDR----TIAENL
TH_4343|M.thermoresistible__bu EALPGVAAKVTEMVAATRAQEAEFAANVAAAKQAYQRTDD----TADQEL
: : . : :* * : * : * * :
Mflv_0763|M.gilvum_PYR-GCK QKTPSQMPSGSGG--------------------------------SAPGG
Mvan_0082|M.vanbaalenii_PYR-1 QSRLDPLGTGSGGGS----------------------------LPSTAGG
MMAR_4352|M.marinum_M FRGSAPILTG-STVTDQAGQFVDSMATSAWQWADRARQGVETLIDQLSPQ
MUL_4594|M.ulcerans_Agy99 FRGSAPILTG-STVTDQAGQFVQSMATSAWQWADRARQGVETLIDQLSPQ
Mb3908|M.bovis_AF2122/97 FGSSGEGLAGVASVGGQPSQATQLLSTP-----------VSQVTTQLGET
Rv3878|M.tuberculosis_H37Rv FGSSGEGLAGVASVGGQPSQATQLLSTP-----------VSQVTTQLGET
MSMEG_0069|M.smegmatis_MC2_155 QSSTGRFDASTGTEG-------------------------------TSQG
TH_4343|M.thermoresistible__bu KSAADAVYVP-GAL------------------------------------
.
Mflv_0763|M.gilvum_PYR-GCK GADAAGQMSQMMGMPMQMAQMPMQMMSGIASAPQGLMQGAQQASQQVQQM
Mvan_0082|M.vanbaalenii_PYR-1 GADSLGMPMQMAG---QMAQMPMQVMGAVAAVPQGIMQGAQQAGQQVQQM
MMAR_4352|M.marinum_M ISEVAAQVAEAGPQLAQLGSQAAFVAQYASPMAQSIGQSTQQIVSTASQA
MUL_4594|M.ulcerans_Agy99 ISEVAAQVAEAGPQLAQLGSQAAFVAQYASPMAQSIGQSTQQIVSTASQA
Mb3908|M.bovis_AF2122/97 AAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSAQGG
Rv3878|M.tuberculosis_H37Rv AAELAPRVVATVPQLVQLAPHAVQMSQNASPIAQTISQTAQQAAQSAQGG
MSMEG_0069|M.smegmatis_MC2_155 GLQGLEQLQQMMQMPMQAVQMAAQVPTQMAQMAAQVPQTVMQGVQQIGQM
TH_4343|M.thermoresistible__bu --------------------------------------------------
Mflv_0763|M.gilvum_PYR-GCK AGQFG-QGATGGSASSAAQVPAPDAPAPEP---------------ASEGA
Mvan_0082|M.vanbaalenii_PYR-1 VGQFGDQGAKDGQKG----TPSGELPTAAN---------------REEGA
MMAR_4352|M.marinum_M GGAAPAQHG----------LLVDDTKNDDADDDRDAK-------AGADGA
MUL_4594|M.ulcerans_Agy99 GGAAPAQHG----------LLVDDMKADDADDERDAK-------AGADGA
Mb3908|M.bovis_AF2122/97 SGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGA
Rv3878|M.tuberculosis_H37Rv SGPMPAQLASAEKPATEQAEPVHEVTNDDQGDQGDVQPAEVVAAARDEGA
MSMEG_0069|M.smegmatis_MC2_155 SGGTGQDSAGPAAPQT--DSPVGKSKGGRERDDQQEQ---------HEGA
TH_4343|M.thermoresistible__bu --------------------------------------------------
Mflv_0763|M.gilvum_PYR-GCK AAGEPDAERAPTPDERSDREDTGA--------PGRHRAAE----ADDRID
Mvan_0082|M.vanbaalenii_PYR-1 AAAEPHAERAPEPEEKTDTDGGQR--------PGRHRAAE----SDERIE
MMAR_4352|M.marinum_M GAAPGSQTLGGAP---IEGGTGT---------TADNQSAG----PDVTVL
MUL_4594|M.ulcerans_Agy99 GAAPGSQTLGGAP---IEGGTGT---------TADNQSAG----PDVTVL
Mb3908|M.bovis_AF2122/97 GASPGQQPGGGVPAQAMDTGAGARPAASPLAAPVDPSTPA----PSTTTT
Rv3878|M.tuberculosis_H37Rv GASPGQQPGGGVPAQAMDTGAGARPAASPLAAPVDPSTPA----PSTTTT
MSMEG_0069|M.smegmatis_MC2_155 AADPAFTQQAPVTSQVPGAAASEPEAGHSEGRPRANGTVPRPVPSDPAIV
TH_4343|M.thermoresistible__bu --------------------------------------------------
Mflv_0763|M.gilvum_PYR-GCK L
Mvan_0082|M.vanbaalenii_PYR-1 L
MMAR_4352|M.marinum_M -
MUL_4594|M.ulcerans_Agy99 -
Mb3908|M.bovis_AF2122/97 L
Rv3878|M.tuberculosis_H37Rv L
MSMEG_0069|M.smegmatis_MC2_155 L
TH_4343|M.thermoresistible__bu -