For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
RTTAELRETILTAARSEFAQYGLAGARIDRIARTAEASKERLYAHFQDKEALFRSVVAADMEEFFAAVTL RPDAVPEFVGDIYDLACRRPEHLRMITWANLEGLVLDPPQVEGVESVQARDVGVIEAAQAAGHVDPHWHP MDLLVLLFGVGLAWAQSPHPDAVATDRAVIEGRRAAAVEAARRIVAPIRGIS*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_3952 | - | - | 100% (193) | hypothetical protein MMAR_3952 |
| M. marinum M | MMAR_0287 | - | 9e-08 | 39.13% (69) | transcriptional regulatory protein |
| M. marinum M | MMAR_1268 | - | 3e-07 | 28.49% (172) | putative regulatory protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1047 | - | 6e-07 | 38.24% (68) | TetR family transcriptional regulator |
| M. gilvum PYR-GCK | Mflv_1947 | - | 1e-06 | 36.76% (68) | TetR family transcriptional regulator |
| M. tuberculosis H37Rv | Rv1019 | - | 6e-07 | 38.24% (68) | TetR family transcriptional regulator |
| M. leprae Br4923 | MLBr_00717 | - | 2e-05 | 25.40% (189) | putative TetR-family transcriptional regulator |
| M. abscessus ATCC 19977 | MAB_3705 | - | 5e-26 | 35.45% (189) | TetR family regulatory protein |
| M. avium 104 | MAV_0082 | - | 1e-67 | 69.15% (188) | transcriptional regulator, TetR family protein |
| M. smegmatis MC2 155 | MSMEG_1305 | - | 2e-17 | 34.57% (162) | TetR family protein regulatory protein |
| M. thermoresistible (build 8) | TH_0912 | - | 8e-07 | 36.76% (68) | transcriptional regulator, TetR family protein |
| M. ulcerans Agy99 | MUL_2620 | - | 2e-08 | 27.98% (193) | hypothetical protein MUL_2620 |
| M. vanbaalenii PYR-1 | Mvan_4046 | - | 1e-62 | 62.83% (191) | TetR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
Mb1047|M.bovis_AF2122/97 -----------------MTGTERRHQLIGIARSLFAERGYDGTSIEEIAQ
Rv1019|M.tuberculosis_H37Rv -----------------MTGTERRHQLIGIARSLFAERGYDGTSIEEIAQ
Mflv_1947|M.gilvum_PYR-GCK -----------------MTGSERRQQLIEIAKSLFAERGFDGTSIEEIAL
TH_0912|M.thermoresistible__bu -----------------MTGSERRQQLIEIAKSLFAERGYEGTSIEEIAL
MMAR_3952|M.marinum_M ----------------MRTTAELRETILTAARSEFAQYGLAGARIDRIAR
MAV_0082|M.avium_104 ----------------MRTATELRGEILQAAGAEFAQYGLAGARIDRIAR
Mvan_4046|M.vanbaalenii_PYR-1 ----------------MRSTGELRDAILVAARAEFAQYGLAGARIDRIAK
MAB_3705|M.abscessus_ATCC_1997 ---------------MPPDASATKKRLLDAAYAEFAEHGLAGARVDRIGA
MSMEG_1305|M.smegmatis_MC2_155 ---------------MAWDTARTKQKLLDAAVHEFSEHGPLGARVDRVAS
MUL_2620|M.ulcerans_Agy99 MERKRQRNTTRVREAGAASRAQTRHLLLTAAAEEFARVGYVASTVSRIAE
MLBr_00717|M.leprae_Br4923 ----------MTTARRRLSPEDRRAELLALGAEVFGKRPYDEVRIDEIAE
: :: . *.. :..:.
Mb1047|M.bovis_AF2122/97 RANVSKPVVYEHFGGKEGLYAVVVDREMSALLDGITSSLTN-NRSRVRVE
Rv1019|M.tuberculosis_H37Rv RANVSKPVVYEHFGGKEGLYAVVVDREMSALLDGITSSLTN-NRSRVRVE
Mflv_1947|M.gilvum_PYR-GCK RANVSKPVVYEHFGGKEGLYAVVVDREMSALLDGITSSLAD-NRSRVRVE
TH_0912|M.thermoresistible__bu RANVSKPVVYEHFGGKEGLYAVVVDREMSALLDGITSSLTN-NRSRVRVE
MMAR_3952|M.marinum_M TAEASKERLYAHFQDKEALFRSVVAADMEEFFAAVTLRP-------DAVP
MAV_0082|M.avium_104 VAQASKERLYAHFRDKETLFREVVAAGNREFFSAVTLRP-------DAVP
Mvan_4046|M.vanbaalenii_PYR-1 AAAASKERLYAHFRDKETLFREVLAADGAEFFAAVSLRP-------DSVP
MAB_3705|M.abscessus_ATCC_1997 AAEANKRLLYVYYTNKETLFDIVVAHSIQQMSEAVPFTP-------EDLP
MSMEG_1305|M.smegmatis_MC2_155 RAGVNKERIYQYFGSKQNLFSAVLEQEMIKLAAAVPLTPE----LAHDLG
MUL_2620|M.ulcerans_Agy99 GAGVTVQTLYLAWGSKRALLRGYLESTLAPDAAPSGQHFAA-QLQPDSPA
MLBr_00717|M.leprae_Br4923 RAGVSRALMYHYFPDKRAFFAAVVKDEADRLYAATNIPPPAGLTMFEEVR
* .. :* : .*. : :
Mb1047|M.bovis_AF2122/97 RVALALLTYVEERTDGFRIMIR--DSPASISSGTYSSLLNDAVSQVSSIL
Rv1019|M.tuberculosis_H37Rv RVALALLTYVEERTDGFRIMIR--DSPASISSGTYSSLLNDAVSQVSSIL
Mflv_1947|M.gilvum_PYR-GCK RVALALLTYVEERTDGFRILIR--DSPASITQGTYSTLLNDAVSQVESIL
TH_0912|M.thermoresistible__bu RVALALLTYVEERTDGFRILIR--DSPAAITSGTYSTLLNDAVNQVSSIL
MMAR_3952|M.marinum_M EFVGDIYDLACRRPEHLRMITW--ANLEGLVLD--PPQVEGVESVQARDV
MAV_0082|M.avium_104 DFVGGIYDLAREHPEHHRMISW--AQLEGIALD--EPHAEG-QPAFAQHV
Mvan_4046|M.vanbaalenii_PYR-1 EFAGDIFDLSLSHPEHFRMINW--GRLEGVSLD--PPAGDDGRTAPAEAL
MAB_3705|M.abscessus_ATCC_1997 GYAGALFDHLIKHPEHLRLATW--AQLER-------PAAG--PAETSAYA
MSMEG_1305|M.smegmatis_MC2_155 EFSGRIYDYHREYPHYLRLLLW--EGLDRNPLDGNPPAARDERAEHYAGD
MUL_2620|M.ulcerans_Agy99 GTLAQVSALVCDAARRSAIAWR--AYRDGSGVDSAIAAEWHQIQMLRRET
MLBr_00717|M.leprae_Br4923 VGVLAYMAYHKQNPEAAWAAYVGLGRSDPVLLGIDDEAKNRQMEHIMSRI
.
Mb1047|M.bovis_AF2122/97 AGDFARRGLDPDLAPLYAQALVGSVSMTAQWWLDAREPKK----------
Rv1019|M.tuberculosis_H37Rv AGDFARRGLDPDLAPLYAQALVGSVSMTAQWWLDAREPKK----------
Mflv_1947|M.gilvum_PYR-GCK AGDFSRRGLDPDLAPLYAQALVGSVSMAAQWWLDVREPKK----------
TH_0912|M.thermoresistible__bu AGDFSRRGLDPEMAPLYAQALVGSVSMTAQWWLDVREPKK----------
MMAR_3952|M.marinum_M GVIEAAQAAGHVDPHWHPMDLLVLLFGVGLAWAQSPHPDA----------
MAV_0082|M.avium_104 AAIEAAQADGHVDGAWQPDDLLIVLFGIALAWANSPHPDA----------
Mvan_4046|M.vanbaalenii_PYR-1 DAVRAAQRDGLVDTRWDPEELLILLFGLGLAWAHWPDPRS----------
MAB_3705|M.abscessus_ATCC_1997 AKVAAIAQTGLSAGDVEPADILALTLGLTTAWLGASPALRGLAA------
MSMEG_1305|M.smegmatis_MC2_155 RRVVALAQADKTLRDDVAPAYLLYVARSMAAWWLAVPAAIDLML------
MUL_2620|M.ulcerans_Agy99 MRALLVTIPDDALRLPRQDAVDTAWAITSPASQPASQPATRSWLPTAGSP
MLBr_00717|M.leprae_Br4923 GDVVSVVPESKLHPDIERDLRVIVHGWLAFTFEVCRQRIMDP--------
.
Mb1047|M.bovis_AF2122/97 -EVVAAHLVNLVWNGLTHLEADPRLQDE----------------------
Rv1019|M.tuberculosis_H37Rv -EVVAAHLVNLVWNGLTHLEADPRLQDE----------------------
Mflv_1947|M.gilvum_PYR-GCK -EVVAAHLVNLCWNGLTHLESDPVLHEE----------------------
TH_0912|M.thermoresistible__bu -EVVAAHLVNLCWNGLTHLEPDPVLHEE----------------------
MMAR_3952|M.marinum_M -VATDRAVIEGRRAAAVEAARRIVAPIRGIS-------------------
MAV_0082|M.avium_104 -ATNDPDANARRRAAAVEAARRIIAPSK----------------------
Mvan_4046|M.vanbaalenii_PYR-1 -VTEDAGQIAQRRAAAVEAASRIVAVADGAADGSDRLATSPRSR------
MAB_3705|M.abscessus_ATCC_1997 SEPFSPERLATHRTALIAAVEALVSAAAR---------------------
MSMEG_1305|M.smegmatis_MC2_155 GTTVAGEGPDVRRKALVTLVNDAVRYRKS---------------------
MUL_2620|M.ulcerans_Agy99 CSALKPGSPPPCKTPSCAIRRAAGEPRRAAPPRRLVNRAEQRPILMSHLT
MLBr_00717|M.leprae_Br4923 -STDADRLADSCAHALLDAIARVPEISKELADAMAIARQPPQ--------
Mb1047|M.bovis_AF2122/97 -
Rv1019|M.tuberculosis_H37Rv -
Mflv_1947|M.gilvum_PYR-GCK -
TH_0912|M.thermoresistible__bu -
MMAR_3952|M.marinum_M -
MAV_0082|M.avium_104 -
Mvan_4046|M.vanbaalenii_PYR-1 -
MAB_3705|M.abscessus_ATCC_1997 -
MSMEG_1305|M.smegmatis_MC2_155 -
MUL_2620|M.ulcerans_Agy99 A
MLBr_00717|M.leprae_Br4923 -