For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
TVVVGYLAGRVGPSALHLAVRAARTLDTSLTVATILTKPWLTPPLAKGDYSEWAEQVAEDSEKEAHRYLR TVATGIEVSYCHREHRSVSGGLIEVVEELDAEMLILGSFPNGRRARVLIGSTADWVLHSSPVPVAISPRQ YHSRTDRLTRITCGYAATTDSVEVVRRCAELARQYGVPLRVITFAVRGRTMYPPEVGLHAEALVLEAWAE QARGMLEMLQKDGIVEEDAVLEVITGNGWQHALDAADWEDGEILAVGTSPRGDIARVFLGSNSGKIIRHS PVPVLVLPG*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. marinum M | MMAR_3620 | - | - | 100% (290) | hypothetical protein MMAR_3620 |
M. marinum M | MMAR_5410 | - | 4e-06 | 22.00% (300) | hypothetical protein MMAR_5410 |
M. marinum M | MMAR_2076 | - | 6e-06 | 23.18% (289) | hypothetical protein MMAR_2076 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2346c | - | 1e-121 | 73.97% (292) | hypothetical protein Mb2346c |
M. gilvum PYR-GCK | Mflv_1999 | - | 2e-45 | 32.76% (293) | UspA domain-containing protein |
M. tuberculosis H37Rv | Rv2319c | - | 1e-121 | 73.97% (292) | hypothetical protein Rv2319c |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_3843 | - | 2e-84 | 52.56% (293) | hypothetical protein MAB_3843 |
M. avium 104 | MAV_2507 | - | 6e-05 | 31.25% (128) | universal stress protein family protein |
M. smegmatis MC2 155 | MSMEG_1411 | - | 2e-82 | 51.88% (293) | universal stress protein family protein |
M. thermoresistible (build 8) | - | - | - | - | - |
M. ulcerans Agy99 | MUL_1245 | - | 1e-164 | 98.97% (290) | hypothetical protein MUL_1245 |
M. vanbaalenii PYR-1 | Mvan_1573 | - | 2e-18 | 25.51% (294) | UspA domain-containing protein |
CLUSTAL 2.0.9 multiple sequence alignment MMAR_3620|M.marinum_M ---MTVVVGYLAGRVGPSALHLAVRAARTLDTSLTVATILTKPWLTPPLA MUL_1245|M.ulcerans_Agy99 ---MTVVVGYLAGRVGPSALHLAVRAARTLDTSLTVATILTKPWLTPPLA Mb2346c|M.bovis_AF2122/97 ---MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLA Rv2319c|M.tuberculosis_H37Rv ---MTIVVGYLAGKVGPSALHLAVRVARMHKTSLTVATIVRRHWPTPSLA MAB_3843|M.abscessus_ATCC_1997 ---MTVVVGYLSGKGGKGALHLAVESARVLETSLTVTTVVPKPWTTLSKA MSMEG_1411|M.smegmatis_MC2_155 ---MTVVVGYLTGKAGASPLHLAVGAARTLQTSLAVATVVPRPWMTPSPA Mflv_1999|M.gilvum_PYR-GCK ---MTIIAGFSASGQGPAPLHLAAQLARCTGERIVAVAIVERQWPQN--- Mvan_1573|M.vanbaalenii_PYR-1 ---MHLTVGYLATPTGDDGVALASALARTFDATVDVVIVVRHELPDG--- MAV_2507|M.avium_104 MAASSKRCGVLVGVDGSPASNFAVCWAARDAAMRNVPLTLVHMVNAATVW * * :* * . : : MMAR_3620|M.marinum_M KG--DYSEWAEQVAEDSEKEAHRYLRTVATG-IEVSYCHREHRSVSGGLI MUL_1245|M.ulcerans_Agy99 KG--DYSEWAEQVAEDSEKEAHRYLRTVATG-IEVSYCHREHRSVSGGLI Mb2346c|M.bovis_AF2122/97 RVDAEYELWSEQLAAASAREAQRYLRRLADG-IEVSYHHRAHRSVSAGLL Rv2319c|M.tuberculosis_H37Rv RVDAEYELWSEQLAAASAREAQRYLRRLADG-IEVSYHHRAHRSVSAGLL MAB_3843|M.abscessus_ATCC_1997 KIDAEYAQWAQKLSDDSKSEATAYLEKIGAG-IDVTFHNVAHRSVSGGLL MSMEG_1411|M.smegmatis_MC2_155 RIDAEYAQYAAQLASTSAEQARQVISELDSE-LEVTFHKFAHRSVSDGLM Mflv_1999|M.gilvum_PYR-GCK -ADPLEDEYLNYVGAQAQKSLKEMVDKLPGD-LDVWRMVHQAESVPSGLT Mvan_1573|M.vanbaalenii_PYR-1 --HPGRAEYQQMLVNLGEQWAARAVAALAADGVTAESSAIVADSFAQALV MAV_2507|M.avium_104 PQVPMAAEAVAWQEDDGRRVLQEAVKIAEDATRNGRNLAITTELWHAPPA . : MMAR_3620|M.marinum_M EVVEEL--DAEMLILGSFPNGRRARVLIGSTADWVLHSSPVPVAISPRQY MUL_1245|M.ulcerans_Agy99 EVVEEL--DAQMLILGSFPNGRRARVLIGSTADWVLHSSPVPVAISPRQY Mb2346c|M.bovis_AF2122/97 DVVEEL--EAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRY Rv2319c|M.tuberculosis_H37Rv DVVEEL--EAEVLVLGSFPSGRRARVLIGSTADRLLHSSPVPVAITPRRY MAB_3843|M.abscessus_ATCC_1997 EAVEAS--DADVLVVGSASEGRLGQVVLGSTGDRLLHSSPVPLAISPRGY MSMEG_1411|M.smegmatis_MC2_155 EAVESL--NAEALVLGSAADGKLGQVVVGSTADRLLHSCPVPLVVSPRGY Mflv_1999|M.gilvum_PYR-GCK ELAEEM--NADVVVVGSSSSGLLGRIALGSVTDRLVHTAAVPVAIAPRGY Mvan_1573|M.vanbaalenii_PYR-1 EFAEEK--SSDLIVVGGARDGFFGRHTIGPVTGALLHSSSIPVALAPRGY MAV_2507|M.avium_104 PTLAQLSEEAELVVVGSTGRGAIGRLLLGSVSSGLVRRARCPVAVIHDED .:: :::*. * .: :*.. . ::: . *:.: MMAR_3620|M.marinum_M H-SRTDRLTRITCGYAATTDSVEVVRRCAELARQYGVPLRVITFAVRGRT MUL_1245|M.ulcerans_Agy99 H-SRTDRLTRITCGYAATTDSVEVVRRCAELARQYGVPLRVITFAVRVRT Mb2346c|M.bovis_AF2122/97 R-CYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRT Rv2319c|M.tuberculosis_H37Rv R-CYTDRLTRLSCGYSATSGSVDVVRRCGHLASRYGVPMRVITFAVRGRT MAB_3843|M.abscessus_ATCC_1997 RGSRAGTVSRVTCGYPGTEDAVDVVQQAVRLTQRLHAPLRVVTFAVRGRT MSMEG_1411|M.smegmatis_MC2_155 RRPRSGGLSRITVAYPGTRDAVDVVERIAALTQRLGVTMRVVTFAVRGRS Mflv_1999|M.gilvum_PYR-GCK P-LQDSRIERLTVAYGGHADEGGLVAAGAELARRWSATLRIASFTVRPVT Mvan_1573|M.vanbaalenii_PYR-1 AEDPDEHFLAVTAAVPSKPGDDNPLPFAIALAGAAGLRMRMLSLVSAEN- MAV_2507|M.avium_104 PMMPYPQRAPVLVGIDGSPASELATAIAFDEALRRGVDLNAVHAWSDTQV : . . : :. MMAR_3620|M.marinum_M MYPPEVGLHAEALVLEAWAEQARG---MLEMLQKDGIVEEDAVLEVITGN MUL_1245|M.ulcerans_Agy99 MYPPEVGLHAEALVLEAWAEQARG---MLEMLQKDGIVEEDAVLEVITGN Mb2346c|M.bovis_AF2122/97 MYPPEVGLHAEASVLEAWAAQARE---LLEKLRINGVVSEDVVLQVVTGN Rv2319c|M.tuberculosis_H37Rv MYPPEVGLHAEASVLEAWAAQARE---LLEKLRINGVVSEDVVLQVVTGN MAB_3843|M.abscessus_ATCC_1997 MLTAGVGPEAEDAVLASWVTQSEE---ALSELRQAGIVTADVELKVVTGD MSMEG_1411|M.smegmatis_MC2_155 MYPPLVGLSKEDLILQEWIEQAQD---SLRRLATDGVIGEDVEVVVASGS Mflv_1999|M.gilvum_PYR-GCK MFSGAIETSAEDLVVQQWVRRTQEKIAAQLEAVRSGVDTLDAEVVIGAGA Mvan_1573|M.vanbaalenii_PYR-1 ----LAEAGSAKEVRALQVAAAEEN---LAVAARALPDAPDIESLVADGM MAV_2507|M.avium_104 FGLPGMDWPAVRSQAERSLAERLAG-------WQERYPDVTVHRMVVCDR : . MMAR_3620|M.marinum_M GWQHALDAADWEDGEILAVGTSPRGDIARVFLGSNSGKIIRHSPVPVLVL MUL_1245|M.ulcerans_Agy99 GWQHALDAADWEDGEILAVGTSPRGDIARVFLGSNSGRIIRHSPVPVLVL Mb2346c|M.bovis_AF2122/97 GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVL Rv2319c|M.tuberculosis_H37Rv GWAQALDAADWQDGEILALGTSPFGDVARVFLGSWSGKIIRYSPVPVLVL MAB_3843|M.abscessus_ATCC_1997 TWDDALDNAEWNDGELLVLGSRPHSAVARVFLGSRATKIVRHSPVPVVVM MSMEG_1411|M.smegmatis_MC2_155 AWDEALDSIEWIEGEVLAIGTSPAGAVRRVFLGERGTKILRYSPLPVLVL Mflv_1999|M.gilvum_PYR-GCK TWRDAVEAIDWGSGDVLVLGSGAAGQVAQVFLGSAAARILRHSPVPTMIV Mvan_1573|M.vanbaalenii_PYR-1 TLESALKKLRWDDGDLLVVGSSRFAAPRRIFLGSTAARILAGVDVPVIVV MAV_2507|M.avium_104 PARQLIEQSES--AQLTVVGSHGRGGLAGTLLGSVSNAVVHSVRMPVIVA :. .:: .:*: . :**. . :: :*.:: MMAR_3620|M.marinum_M PG---- MUL_1245|M.ulcerans_Agy99 PG---- Mb2346c|M.bovis_AF2122/97 PG---- Rv2319c|M.tuberculosis_H37Rv PG---- MAB_3843|M.abscessus_ATCC_1997 PG---- MSMEG_1411|M.smegmatis_MC2_155 PG---- Mflv_1999|M.gilvum_PYR-GCK PRREGL Mvan_1573|M.vanbaalenii_PYR-1 PKAE-- MAV_2507|M.avium_104 RPS---