For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VNYDWEQLPGSVYRCRLPFCDVTVGLVIGRDDALLVDSGSTLREAAAIQADIRQLADRRVAHIALTHKHF DHVLGSSAFVGAEIYCAPEVAEYLSSASHQLREDALHHGADAGEIDTAIAALRPPRHPILDADVHLGDRR VRITHLGRGHTSADLVVVATPPAAQTGPVVVFTGDLVEESADPAIDADSDVAAWPATLERLLAIGGPDAI YVPGHGSVVDADFIRGQRDWLKQRAHPGLR
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. marinum M | MMAR_2819 | - | - | 100% (240) | hypothetical protein MMAR_2819 |
M. marinum M | MMAR_4572 | - | 7e-11 | 29.73% (222) | bifunctional enzyme: 2-hydroxyhepta-2,4-diene- 1,7-dioate |
M. marinum M | MMAR_2442 | - | 6e-05 | 30.60% (183) | hypothetical protein MMAR_2442 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb1948 | - | 8e-93 | 69.79% (235) | hypothetical protein Mb1948 |
M. gilvum PYR-GCK | Mflv_3131 | - | 1e-59 | 50.87% (230) | beta-lactamase domain-containing protein |
M. tuberculosis H37Rv | Rv1913 | - | 8e-93 | 69.79% (235) | hypothetical protein Rv1913 |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_2020c | - | 3e-10 | 28.89% (225) | bifunctional HHDD isomerase/cyclase/dehydrase |
M. avium 104 | MAV_2782 | - | 1e-94 | 71.19% (236) | metallo-beta-lactamase |
M. smegmatis MC2 155 | - | - | - | - | - |
M. thermoresistible (build 8) | TH_2173 | - | 6e-67 | 54.70% (234) | CONSERVED HYPOTHETICAL PROTEIN |
M. ulcerans Agy99 | MUL_1621 | - | 1e-05 | 27.98% (243) | hypothetical protein MUL_1621 |
M. vanbaalenii PYR-1 | Mvan_3402 | - | 1e-69 | 55.36% (233) | beta-lactamase domain-containing protein |
CLUSTAL 2.0.9 multiple sequence alignment Mb1948|M.bovis_AF2122/97 ----MHFDWER-------LTDSVHRCRLP---FCDVTVGLVRGRTGILLV Rv1913|M.tuberculosis_H37Rv ----MHFDWER-------LTDSVHRCRLP---FCDVTVGLVRGRTGILLV MAV_2782|M.avium_104 ----MHLAWER-------LTGSVHRCRLP---FCDVTVGLICGRSGTLLV MMAR_2819|M.marinum_M ----MNYDWEQ-------LPGSVYRCRLP---FCDVTVGLVIGRDDALLV Mflv_3131|M.gilvum_PYR-GCK ---MSELVWER-------LTRHVMRCRLP---FCDVTVGVVHSDGAAVVI Mvan_3402|M.vanbaalenii_PYR-1 MVAGPSLEWER-------ITAQVMRCRLP---FCDVTVGVVHAGGEALVV TH_2173|M.thermoresistible__bu ----VNFTWER-------LADKVFRTRLP---FLDVTVGVVCGSTGTLLV MAB_2020c|M.abscessus_ATCC_199 --MAQDFAFQKGLVPLGGGAHVFLSGDEG---FGLANAGLVVSDDESLVV MUL_1621|M.ulcerans_Agy99 -MTVVDDNYTG-----HVDPGTVARRTLPGATILKASVGPVDNNAYLVTC : . . : ...* : : Mb1948|M.bovis_AF2122/97 DT-GTTLGEATAIAADVK-QIAGCQVTHVVLTHKHFDHVLGSSVFDQ-AE Rv1913|M.tuberculosis_H37Rv DT-GTTLGEATAIAADVK-QIAGCQVTHVVLTHKHFDHVLGSSVFDQ-AE MAV_2782|M.avium_104 DT-GTTLTEAAAIDADVH-RLARRPVSHIALTHKHFDHVLGSSLFTG-AE MMAR_2819|M.marinum_M DS-GSTLREAAAIQADIR-QLADRRVAHIALTHKHFDHVLGSSAFVG-AE Mflv_3131|M.gilvum_PYR-GCK DC-GTTLTEARAVAADVS-ELTGCAVTHLVLTHHHFDHVLGHPVFDG-AQ Mvan_3402|M.vanbaalenii_PYR-1 DT-GTTLAEARAVVRDVA-ALTDCVVRHVVVTHNHFDHVLGHSAFGG-AQ TH_2173|M.thermoresistible__bu DT-GTTLGEAAAIVADVG-ELAATPITHILLTHNDFDHILGIGGHPG-AE MAB_2020c|M.abscessus_ATCC_199 DT-LYDVRHAREMLDEFGRHTATAPVRYVFNTHTDGDHFFGNQVFADDVE MUL_1621|M.ulcerans_Agy99 SATGQTLLIDAANDAEVLIDLIRRYAPKIALIVTSHQHFDHWQALQAVAE . : :. : :*. .: Mb1948|M.bovis_AF2122/97 VFCAPEVVEYLRSATDRLREDALSYGADTAEVDRAIAALKPPQHG----- Rv1913|M.tuberculosis_H37Rv VFCAPEVVEYLRSATDRLREDALSYGADTAEVDRAIAALKPPQHG----- MAV_2782|M.avium_104 VYCAPEVVEYLGAATDQIRDDALRHGADAAEVDAAIAALRPGQHG----- MMAR_2819|M.marinum_M IYCAPEVAEYLSSASHQLREDALHHGADAGEIDTAIAALRPPRHP----- Mflv_3131|M.gilvum_PYR-GCK TFCSPEVTAALHER-EWLRSDALRYGADPQEVDDALTAAVPPAVA----- Mvan_3402|M.vanbaalenii_PYR-1 TFCSAEVVATMADAGESLRADAIRHGADPCEVDDALAALRPPVGA----- TH_2173|M.thermoresistible__bu VFSTDRVVATLLHESAQLRDEALSYDADPQEIDAAIAARRIPDHA----- MAB_2020c|M.abscessus_ATCC_199 IITTEAARALMVQEHADLTAELLGGSSDPASNMHVLAPLAKPFHFNEVRV MUL_1621|M.ulcerans_Agy99 ATGAPTAAHEIDAEPLPVKPDRLLANGD---------------------- : . : : : : ..* Mb1948|M.bovis_AF2122/97 -------IYDAAVDLGDRTVTITHPGSGHTTADLVVVAPATGHADGPTVV Rv1913|M.tuberculosis_H37Rv -------IYDAAVDLGDRTVTITHPGSGHTTADLVVVAPATGHADGPTVV MAV_2782|M.avium_104 -------IRDARIDLGDRTVTITHLGAGHTASDLAVIVPAARDGE-PTVV MMAR_2819|M.marinum_M -------ILDADVHLGDRRVRITHLGRGHTSADLVVVATPPAAQTGPVVV Mflv_3131|M.gilvum_PYR-GCK -------VPYGTVELAGVVVRISHPGRGHTGHDLIAVVTDG----QDTVV Mvan_3402|M.vanbaalenii_PYR-1 -------VCDGVVELGDVVVTIAHPGRGHTAHDLIVVVEGG----PRTVV TH_2173|M.thermoresistible__bu -------VRQAVVGLGDRTVSIVHPGRGHTDHDLIAVVRGA----ERPVV MAB_2020c|M.abscessus_ATCC_199 RPADTTFSGERALRVGKLDVELHELGPAHTVGDAVAFLPEHR------VL MUL_1621|M.ulcerans_Agy99 -----------RVQIGELSFDVIHLR-GHTPGSIALALDGAATG-GVTQL : :. . : . .** . : Mb1948|M.bovis_AF2122/97 FTGDLVEESADPDIDADSDLAAWPATLD-RVLAIGGPDASYVPGHG---- Rv1913|M.tuberculosis_H37Rv FTGDLVEESADPDIDADSDLAAWPATLD-RVLAIGGPDASYVPGHG---- MAV_2782|M.avium_104 FTGDLVEESGDPAIDADSDVTAWPATLD-RLLALGGPGARYVPGHG---- MMAR_2819|M.marinum_M FTGDLVEESADPAIDADSDVAAWPATLE-RLLAIGGPDAIYVPGHG---- Mflv_3131|M.gilvum_PYR-GCK FCGDLVEESGEPCVDDQSDPAAWPATLQ-RVVDAGGESGIYVPGHG---- Mvan_3402|M.vanbaalenii_PYR-1 FCGDLVEESGDPCIDAQSDLDAWPGTLR-RVLAAGGESAVYVPGHG---- TH_2173|M.thermoresistible__bu FCGDLVEESGEPSVEADSDPGSWPATLD-RLLRIGGPDAVYVPGHG---- MAB_2020c|M.abscessus_ATCC_199 FSGDLLTR-GIVKVVWSGSIPNWIVALE-RIRAFG--AKIVVPGHGPLLV MUL_1621|M.ulcerans_Agy99 FTGDCLFPGGVGKTWQPGDFTQLVEDVSSRVFNVYPDSTVVYPGHG---- * ** : . .. : *: **** Mb1948|M.bovis_AF2122/97 -KVVDAQFVRRQRAWLRTRASRQPRETPATLPCKR--------------- Rv1913|M.tuberculosis_H37Rv -KVVDAQFVRRQRAWLRTRASRQPRETPATLPCKR--------------- MAV_2782|M.avium_104 -RVVDAAFVRRQRDWLRARAATR--------------------------- MMAR_2819|M.marinum_M -SVVDADFIRGQRDWLKQRAHPGLR------------------------- Mflv_3131|M.gilvum_PYR-GCK -AVVEAAFVRRQAQWLA----GR--------------------------- Mvan_3402|M.vanbaalenii_PYR-1 -ALVDASFLRRQADWLATAASGRGQVGC---------------------- TH_2173|M.thermoresistible__bu -ATVDAAFVQRQRQWLA----ERV-------------------------- MAB_2020c|M.abscessus_ATCC_199 DAEVDAAIDRGIAFWSDLHEQANRLYDQGVPAQDATALIDIAKYPEAMVT MUL_1621|M.ulcerans_Agy99 -DDTALGFERPHLDEWRERGW----------------------------- . : : Mb1948|M.bovis_AF2122/97 ---------------------------------------- Rv1913|M.tuberculosis_H37Rv ---------------------------------------- MAV_2782|M.avium_104 ---------------------------------------- MMAR_2819|M.marinum_M ---------------------------------------- Mflv_3131|M.gilvum_PYR-GCK ---------------------------------------- Mvan_3402|M.vanbaalenii_PYR-1 ---------------------------------------- TH_2173|M.thermoresistible__bu ---------------------------------------- MAB_2020c|M.abscessus_ATCC_199 LPIIVTAIYHERNPEIPFQSLTQALESISGQLAKAAAGPK MUL_1621|M.ulcerans_Agy99 ----------------------------------------