For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_1898 | - | - | 100% (175) | RNA polymerase ECF-type sigma factor |
| M. thermoresistible (build 8) | TH_1729 | sigC | 6e-06 | 27.69% (130) | PROBABLE RNA POLYMERASE SIGMA FACTOR, ECF SUBFAMILY, SIGC |
| M. thermoresistible (build 8) | TH_1681 | sigD | 1e-05 | 28.91% (128) | PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA-D FACTOR SIGD |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0756 | sigL | 1e-11 | 32.68% (153) | RNA polymerase sigma factor SigL |
| M. gilvum PYR-GCK | Mflv_5063 | - | 2e-69 | 74.71% (170) | ECF subfamily RNA polymerase sigma-24 factor |
| M. tuberculosis H37Rv | Rv0735 | sigL | 1e-11 | 32.68% (153) | RNA polymerase sigma factor SigL |
| M. leprae Br4923 | MLBr_01448 | - | 7e-10 | 30.60% (134) | RNA polymerase sigma factor SigC |
| M. abscessus ATCC 19977 | MAB_4652 | - | 4e-13 | 33.11% (151) | putative RNA polymerase sigma factor |
| M. marinum M | MMAR_1073 | sigL | 3e-10 | 30.77% (156) | alternative RNA polymerase sigma factor (RpoE), SigL |
| M. avium 104 | MAV_4415 | - | 7e-14 | 33.33% (156) | RNA polymerase sigma factor, sigma-70 family protein |
| M. smegmatis MC2 155 | MSMEG_1418 | - | 3e-74 | 78.29% (175) | RNA polymerase ECF-type sigma factor |
| M. ulcerans Agy99 | MUL_0831 | sigL | 1e-09 | 30.13% (156) | RNA polymerase sigma factor SigL |
| M. vanbaalenii PYR-1 | Mvan_1293 | - | 2e-71 | 75.58% (172) | ECF subfamily RNA polymerase sigma-24 factor |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_5063|M.gilvum_PYR-GCK --MSADSEGAASEGAVPEGLDAPSALLALYDEALPAVYGYFVRRCGDRGT
Mvan_1293|M.vanbaalenii_PYR-1 --MSAE----------PDGEHAPRALLALYDEALPAVYGYFVRRCGDRGT
MSMEG_1418|M.smegmatis_MC2_155 --MSAET-------------DAPRALLRLYDEALPVVYGYFVRRCGDRGT
TH_1898|M.thermoresistible__bu --VSVE----------PDPQPAPQALLDLYDEALPVVYGYFVRRCADRAT
MAB_4652|M.abscessus_ATCC_1997 MMTQRDPTTRRGLRAVSSGGDHYADWQSVYEDNAVWIYRTIYARVGNKPD
MAV_4415|M.avium_104 MAARNEPVGPRPLRAVPEGG--YPDWEAVYSDNAAWVYRTLFARVGNRAD
Mb0756|M.bovis_AF2122/97 -MARVSG----------AAAAEAALMRALYDEHAAVLWRYALRLTGDAAQ
Rv0735|M.tuberculosis_H37Rv -MARVSG----------AAAAEAALMRALYDEHAAVLWRYALRLTGDAAQ
MMAR_1073|M.marinum_M -MARVAG----------GGAAEAALMQALYDEHAAVLWRYAMRLTSDASY
MUL_0831|M.ulcerans_Agy99 -MARVAG----------GGAAEAALMQALYDEHAAVLWRYTMRLTSDASY
MLBr_01448|M.leprae_Br4923 -MIASSGDEAVTDLALAAARGSKRALEAFIKATQQDVWR-FVAYLSDVGN
. . :: .:
Mflv_5063|M.gilvum_PYR-GCK AEDLTSETFLAAMDAARKPSPPD-LSVRWLIGVARHKLADHYRRRWDRFA
Mvan_1293|M.vanbaalenii_PYR-1 AEDLTSETFLAAMDAARKPSPPA-LTVPWLIGVARHKLADHYRRRHDRFT
MSMEG_1418|M.smegmatis_MC2_155 AEDLTSETFLAAMDAARKPSPPP-MTVPWLIGVARHKLADHYRRRHDRFS
TH_1898|M.thermoresistible__bu AEDLTSETFLAAMDAAHRDAHTP-ISVPWLIGVARHKLADHYRRRHHRQS
MAB_4652|M.abscessus_ATCC_1997 AEDLTAEVFLAALRPLRLTVTKA-EVRAYLRTTARTVLAAHWRETLGREI
MAV_4415|M.avium_104 AEDLTAEVFLAALRPLRLTASAA-EVRAYLRATARTVLAAHWRETLGREI
Mb0756|M.bovis_AF2122/97 AEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMIIDERRSARFRNV
Rv0735|M.tuberculosis_H37Rv AEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMIIDERRSARFRNV
MMAR_1073|M.marinum_M ADDIVQETLLRAWQHPEVIDERGRSARAWLFTVARNMIIDDRRSARYRYV
MUL_0831|M.ulcerans_Agy99 ADDIVQETLLRAWQHPEVIDERGRSARAWLFTVARNMIIDDRRSARYRYV
MLBr_01448|M.leprae_Br4923 ADDLTQETFLRAIGAIERFSGHS-SGRTWLLAIARRVVADHIRRAQTRPR
*:*:. *.:* * . :* ** : . * *
Mflv_5063|M.gilvum_PYR-GCK TPVAELPE--PADPADEWDAELDRIVAEQVLTRLSDPHRAVLVLRYMDGC
Mvan_1293|M.vanbaalenii_PYR-1 VPVADPPD--TAEPDDTWDAQLDRIVAEQVLARLPAQHRAVLTLRYMDDC
MSMEG_1418|M.smegmatis_MC2_155 VPVAELPE--PDDPADNWDAAVDRIVAEAVLARLPEQHRTVLALRYMDDC
TH_1898|M.thermoresistible__bu VSVAEVPE--PDEPTDQWDAELDRIVAESVLARLPDQHRTVLALRYLDDC
MAB_4652|M.abscessus_ATCC_1997 TSIPDTQDIADQPPEADEPISTAPEHARAVLAALPENYRRILELRFLQCC
MAV_4415|M.avium_104 TSIEDIE----QPPEHPDAISTAPQRVARVLDSLPDRYRRILESRFLQGN
Mb0756|M.bovis_AF2122/97 VGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGW
Rv0735|M.tuberculosis_H37Rv VGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGW
MMAR_1073|M.marinum_M VSSTDADGAPEQSTPDEVGAALDRLLIADALAQLSGEHRAVIERSYYRGW
MUL_0831|M.ulcerans_Agy99 VSSTDADGAPEQSTPDEVGAALGRLLIADALAQLSGEHRAVIERSYYRGW
MLBr_01448|M.leprae_Br4923 TTFDGYPER-MLNADRHARGFEDLVEVTTMIANLATEQREALLLTQLLGL
. . : *. * :
Mflv_5063|M.gilvum_PYR-GCK SVPECAELIGRTVHATEALLVRARRAFRAMYPE---PEGGLS-
Mvan_1293|M.vanbaalenii_PYR-1 TVGECAELIGRTVHATEALLVRARRAFRAQYPR---PEGGLP-
MSMEG_1418|M.smegmatis_MC2_155 SVPECAELIGRTVHATEALLVRARKAFRAQYPRDSQSEGGAP-
TH_1898|M.thermoresistible__bu SVPECAHLIGRTVHATEALLVRARRAFRRAYPD---REGGTS-
MAB_4652|M.abscessus_ATCC_1997 SIKESAARIGTTVANAKVLQHRALRLAAQINDQ------DAS-
MAV_4415|M.avium_104 SIKEAAAELGISVANAKVLQHRALRLAAQVNEG------GRP-
Mb0756|M.bovis_AF2122/97 STAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL-----GVTR
Rv0735|M.tuberculosis_H37Rv STAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL-----GVTR
MMAR_1073|M.marinum_M TTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQEL-----GVTR
MUL_0831|M.ulcerans_Agy99 TTAQIAKDLEIAEGTVKSRLHYAVRALRLTLQEL-----GVTR
MLBr_01448|M.leprae_Br4923 PYADAAAVCGCPVGTIRSRVARARDALLADTEHN-----HLTG
. : * . . * .