For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
SSDNGRPRDTRIDSAVLDAAAELLLAVGYADLTVAAIAERANTSRPAVYRRWPSKAHLVHEAVFREADTS RVPVTGDLGRDLHSIVARTAALLTSPLARLAVPGLIGEAASDPSLNQRVLDRFAGSGWSGLDAYLADAAA RGELRAGFDAAALLEVVIGSALAAVLVRGPDGLTDTWVSDTTAILLDGVRAR*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. gilvum PYR-GCK | Mflv_0492 | - | - | 100% (193) | TetR family transcriptional regulator |
M. gilvum PYR-GCK | Mflv_4384 | - | 9e-40 | 43.75% (192) | TetR family transcriptional regulator |
M. gilvum PYR-GCK | Mflv_4496 | - | 7e-37 | 44.68% (188) | TetR family transcriptional regulator |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3192c | - | 2e-41 | 45.41% (185) | TetR family transcriptional regulator |
M. tuberculosis H37Rv | Rv3167c | - | 2e-41 | 45.41% (185) | TetR family transcriptional regulator |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_0260 | - | 7e-20 | 36.14% (166) | transcriptional regulator TetR |
M. marinum M | MMAR_0340 | - | 2e-47 | 51.55% (194) | TetR family transcriptional regulator |
M. avium 104 | MAV_5165 | - | 5e-51 | 55.56% (189) | transcriptional regulator, TetR family protein |
M. smegmatis MC2 155 | MSMEG_2043 | - | 6e-44 | 45.95% (185) | transcriptional regulator, TetR family protein |
M. thermoresistible (build 8) | TH_0688 | - | 4e-35 | 40.00% (185) | PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY |
M. ulcerans Agy99 | MUL_4780 | - | 3e-47 | 51.55% (194) | TetR family transcriptional regulator |
M. vanbaalenii PYR-1 | Mvan_1961 | - | 3e-42 | 47.57% (185) | TetR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment Mb3192c|M.bovis_AF2122/97 MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAAVAER Rv3167c|M.tuberculosis_H37Rv MKADLPSLDKAPGAGRPRDPRIDSAILSATAELLVQIGYSNLSLAAVAER MSMEG_2043|M.smegmatis_MC2_155 MKAEASPLGKGVGAGRPRDPRIDAAILRATAELLVEIGYANLTMAAVAER TH_0688|M.thermoresistible__bu MTTNSTSVDKAAGAGRPRDPRIDGAILRATADLLVEIGYSNLTMSAVAER MMAR_0340|M.marinum_M ---------MVADFGRPRDPRIDGAVLRATVELLAETGYAGLLVSAIAKR MUL_4780|M.ulcerans_Agy99 ---------MVADFGRPRDPRIDGAVLRATVELLAETGYAGLLVSAIAKR MAV_5165|M.avium_104 -----------MDFGRPRDPRIDAAVLRATVELLAETGYPGLLVSAIAQR Mvan_1961|M.vanbaalenii_PYR-1 -------------MGRPRNRAIDDAVLRATVELISESSYAELSLDAIAAR Mflv_0492|M.gilvum_PYR-GCK ---------MSSDNGRPRDTRIDSAVLDAAAELLLAVGYADLTVAAIAER MAB_0260|M.abscessus_ATCC_1997 ----MSTEESSLGRGRRRSSDIDVKALAAARELLVEQGWEATTMVAIADR ** *. ** * *: :*: .: : *:* * Mb3192c|M.bovis_AF2122/97 AGTTKSALYRRWSSKAELVHEAAFP-AAPTALQAAAGDIAADIRMMIAAT Rv3167c|M.tuberculosis_H37Rv AGTTKSALYRRWSSKAELVHEAAFP-AAPTALQAAAGDIAADIRMMIAAT MSMEG_2043|M.smegmatis_MC2_155 AQTTKTALYRRWSSKAELVHEAVFP-AVPTGLVAPAGDIAADVHAMIAAA TH_0688|M.thermoresistible__bu AGTTKTALYRRWSSKPELVYAATAP-TDPVDTVESSDDVAGIVRALIERN MMAR_0340|M.marinum_M AGTSKPAIYRRWPSKAHLVHEAVFP-IDAATAVPDTGSPVDDLREMVRRT MUL_4780|M.ulcerans_Agy99 AGTSKPAIYRRWPSKAHLVHEAVFP-IDAATAVPDTGSPVDDLREMVRRT MAV_5165|M.avium_104 AGTSKPAIYRRWPSKAHLVHEAVFP-VGADTAIPDTGSTADDLREMVRRT Mvan_1961|M.vanbaalenii_PYR-1 AGTSKPAIYRRWRGKAHLVHEAVFP-VDATIEIPRTGSLHGDVREMLRRT Mflv_0492|M.gilvum_PYR-GCK ANTSRPAVYRRWPSKAHLVHEAVFR-EADTSRVPVTGDLGRDLHSIVART MAB_0260|M.abscessus_ATCC_1997 ASVGKPALYRRWPSRAHLVFEAVFGWTAPTPEMSAAAGVTDWVRQSCSYT * . :.*:**** .:..**. *. : . :: Mb3192c|M.bovis_AF2122/97 RDVFTTPVVRAALPGLVADMTADAELNARVLARFADLFAA-VRMRLREAV Rv3167c|M.tuberculosis_H37Rv RDVFTTPVVRAALPGLVADMTADAELNARVLARFADLFAA-VRMRLREAV MSMEG_2043|M.smegmatis_MC2_155 RDVFTSPVVRAALPGLIADVSADANLNARVMERFTGVFAA-VRERIVDGI TH_0688|M.thermoresistible__bu RQITATPAARAAMPGLLVDMAADPRLHRGLLGRVGSLVEA-LRRRLAEAA MMAR_0340|M.marinum_M TAVLSTPAAKAALPGLIGEMAADPTLHSALLVRFGEIFGHGLTTWLDNAA MUL_4780|M.ulcerans_Agy99 TAVLSTPAAKAAQPGLIGEMAADPTLHSALLVRFGEIFGHGLTTWLDNAA MAV_5165|M.avium_104 MVFLTTPAAKAALPGLIGEMAADPSLHSALLERFAGAIGGGLADWLAAAA Mvan_1961|M.vanbaalenii_PYR-1 LAVLSTPAARAALPGLVGEMASDPTLHAALLERFADVLVRDLNNYLDSAV Mflv_0492|M.gilvum_PYR-GCK AALLTSPLARLAVPGLIGEAASDPSLNQRVLDRFAGSGWSGLDAYLADAA MAB_0260|M.abscessus_ATCC_1997 AELFERPDVIAAAPALLGQMRTDPELGQALWGSFGATGAGLLSRVMRAQQ . * . * *.*: : :*. * : . : : Mb3192c|M.bovis_AF2122/97 D-RGEAHPDVDPDRLIELIGGATMLRMLLYPDDMLD----DAWVDQTTAI Rv3167c|M.tuberculosis_H37Rv D-RGEAHPDVDPDRLIELIGGATMLRMLLYPDDMLD----DAWVDQTTAI MSMEG_2043|M.smegmatis_MC2_155 A-RGEVHAAVSPDRLVEIIGGATMLRLLLVSDENLD----DEWVHQTAAI TH_0688|M.thermoresistible__bu G-RGEVQSGVDADRLTELIGGSVMFRMVLHPDEPIT----ERWADEVAAI MMAR_0340|M.marinum_M A-RGQVRADVTAPELAEAIAGIVLIGLLTR-PGELEPGVGDAWIDRTTTL MUL_4780|M.ulcerans_Agy99 A-RGQVRADVTAPELAEAIAGIVLIGLLTR-PGELEPGVGDAWIDRTTTL MAV_5165|M.avium_104 A-RGEARPDVTAAELAETIAGVTLVALLTR-PTELD----DAWVDRTTRL Mvan_1961|M.vanbaalenii_PYR-1 R-RGEVRRGVTAVELAEAVTGMTLLALITR-GANVD----DAWIERTAHL Mflv_0492|M.gilvum_PYR-GCK A-RGELRAGFDAAALLEVVIGSALAAVLVRGPDGLT----DTWVSDTTAI MAB_0260|M.abscessus_ATCC_1997 PEIGQEEAQERANAIMFMIIGANMLARQLLPGEHAE-----AVIKHLPEL *: . . : : * : . : Mb3192c|M.bovis_AF2122/97 VVRGVHRAAPGGSVV Rv3167c|M.tuberculosis_H37Rv VVRGVHRAAPGGSVV MSMEG_2043|M.smegmatis_MC2_155 VIHGVTVGR------ TH_0688|M.thermoresistible__bu LIRGVTKEG------ MMAR_0340|M.marinum_M LLKGIRKGTPQ---- MUL_4780|M.ulcerans_Agy99 LLKGIRKGTPQ---- MAV_5165|M.avium_104 LLKGISA-------- Mvan_1961|M.vanbaalenii_PYR-1 ITKGISS-------- Mflv_0492|M.gilvum_PYR-GCK LLDGVRAR------- MAB_0260|M.abscessus_ATCC_1997 LTEPGESPGSVRPSG :