For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VISGAAVGLAAQFVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMVTITYVWKNLGYTFVIYLAALQGV RRDLLEAAEIDGASRWAVFRRVLLPQLRPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVY VETFRNFRAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2859c | ugpAb | - | 100% (180) | sn-glycerol-3-phosphate ABC transporter integral membrane protein |
| M. bovis AF2122 / 97 | Mb2343 | uspA | 6e-25 | 34.94% (166) | sugar-transport integral membrane protein ABC transporter |
| M. bovis AF2122 / 97 | Mb2066c | - | 1e-24 | 32.77% (177) | sugar-transport integral membrane protein ABC transporter |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. gilvum PYR-GCK | Mflv_3776 | - | 4e-22 | 33.33% (177) | binding-protein-dependent transport systems inner membrane |
| M. tuberculosis H37Rv | Rv2835c | ugpA | 1e-100 | 100.00% (180) | sn-glycerol-3-phosphate transport integral membrane protein |
| M. leprae Br4923 | MLBr_01768 | uspA | 1e-23 | 36.11% (144) | sugar transport integral membrane protein |
| M. abscessus ATCC 19977 | MAB_1717c | - | 3e-25 | 34.52% (168) | sugar ABC transporter, permease protein |
| M. marinum M | MMAR_1898 | ugpA | 2e-92 | 90.56% (180) | SN-glycerol-3-phosphate transport integral membrane protein |
| M. avium 104 | MAV_2090 | uspA | 2e-25 | 37.50% (136) | ABC transporter, permease protein UspA |
| M. smegmatis MC2 155 | MSMEG_0516 | - | 1e-29 | 37.14% (175) | sugar transport system |
| M. thermoresistible (build 8) | TH_2010 | - | 8e-20 | 31.43% (175) | sugar ABC transporter permease protein |
| M. ulcerans Agy99 | MUL_2126 | ugpA | 1e-92 | 90.56% (180) | SN-glycerol-3-phosphate transport integral membrane protein |
| M. vanbaalenii PYR-1 | Mvan_2623 | - | 3e-22 | 36.00% (175) | binding-protein-dependent transport systems inner membrane |
CLUSTAL 2.0.9 multiple sequence alignment
Mb2859c|M.bovis_AF2122/97 --------------------------------------------------
Rv2835c|M.tuberculosis_H37Rv ----------------------------MAAPQRARLRSSKERVRDYALF
MMAR_1898|M.marinum_M ----------------------------MTTTRPRRNRS----WRDYALF
MUL_2126|M.ulcerans_Agy99 ----------------------------MTTTRPRRNRS----WRDYALF
MLBr_01768|M.leprae_Br4923 MCAHFNTSMTNTGDDTEQSDEVGSISRLRGRKTHRTRALTKNHPRSIALA
MAV_2090|M.avium_104 ----------------------------------MASAERRVAPRSTALG
MAB_1717c|M.abscessus_ATCC_199 ----------------------------------------MSRSRQTAVA
MSMEG_0516|M.smegmatis_MC2_155 ---------------------------MTGHVATRHSWRDRLGHSEHVAG
Mflv_3776|M.gilvum_PYR-GCK ----------------------------------------------MKFQ
Mvan_2623|M.vanbaalenii_PYR-1 ------------------------------------------MMPSLRFQ
TH_2010|M.thermoresistible__bu -----------MTAIAPGASEHLTGSEADRVARIKHAKQQGVSRAEGWRR
Mb2859c|M.bovis_AF2122/97 --------------------------------------------------
Rv2835c|M.tuberculosis_H37Rv VVLVGPNVALLLLFVYRPLADNIRLSFFDWNVSDPSAR-FVGLSNYTEWF
MMAR_1898|M.marinum_M VALVGPNLALLLLFVYRPLVDNIRLSFFDWNISDPTAE-FVGFSNYIEWF
MUL_2126|M.ulcerans_Agy99 VALVGPNLALLLLFVYRPLVDNIRLSFFDWNISDPTAE-FVGFSNYIEWF
MLBr_01768|M.leprae_Br4923 YALLAPSLFGVVTFLLLPIIVVIWLSLFRWDLLGPLH--YVGLANWRSVL
MAV_2090|M.avium_104 YALLAPSLFGVLAFLLLPILVVIWLSLCRWDLLGPLR--FVGLSNWRSVL
MAB_1717c|M.abscessus_ATCC_199 YGLLAPSLFGVAAFLLLPILVVVWLSLCRWDLLGPIE--FVGLDNWRSVL
MSMEG_0516|M.smegmatis_MC2_155 WTLVSPAVVLIGVFGLLPVLMSLTLSFQHSDLLTPETP-WVGLENYRKLA
Mflv_3776|M.gilvum_PYR-GCK HGMVAPLVALFVGVVGFPLGYAAYLSVTDYKLTDQGAPDIVGADNFVATF
Mvan_2623|M.vanbaalenii_PYR-1 HGMVAPLAALFVGVVGFPLGYAAYLSVTDYKLTDRGAPNLVGADNYVAAF
TH_2010|M.thermoresistible__bu RGPLLPALIFMIIVTQVPFLFTLYFSTLSWNLVRPGSREFVGFQNYVDVV
Mb2859c|M.bovis_AF2122/97 --------------------------------------------------
Rv2835c|M.tuberculosis_H37Rv TRSDTRQIVFNTAVFTGAAVVGSMVLGLALAMLLDRPLRGRNLVRSTVFA
MMAR_1898|M.marinum_M SRPDTRQIVANTAIFTTAAVAGSMVLGLLLAMLLDQPLRGRNLVRSTVFA
MUL_2126|M.ulcerans_Agy99 SRPDTRQIVANTAIFTTAAVAGSMVLGLLLAMLLDQPLRGRNLVRSTVFA
MLBr_01768|M.leprae_Br4923 TDPNFANSLIVTAVFVAIVVPTQTMLGLLIATMLARQLPGTGVFRTLYVL
MAV_2090|M.avium_104 TDAGFGNSLMVTAVFVAMVVPAQTALGLLAATMLARRLPGTGLFRTVYVL
MAB_1717c|M.abscessus_ATCC_199 TDGTFGHSLLVTLLFVALVIPVQTALGLAAATLLVRGLPGTVLFRTIYVI
MSMEG_0516|M.smegmatis_MC2_155 DDPVFVDAIKHTIIYTALFVPGTMIVGLLVAAALNRSVRFISVYRTAAYV
Mflv_3776|M.gilvum_PYR-GCK GDSGFWNAFGTTALYVLVAVGLELVIGLAIALALQKQRWARDLTRSMLLA
Mvan_2623|M.vanbaalenii_PYR-1 SDGAFWGAFGTTALYVLVAVGLELVIGLAIALALQKQRWAKDLTRSMLLA
TH_2010|M.thermoresistible__bu QDSTFWQVAVNSVLIIVVTVLVSVLLGLGLALLLDRVFLGRGIVRTLLIT
Mb2859c|M.bovis_AF2122/97 --MISGAAVGLAAQ-FVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMV
Rv2835c|M.tuberculosis_H37Rv PFVISGAAVGLAAQ-FVFDPHFGLIQDLLRRIGVGVPDFYQDARWALFMV
MMAR_1898|M.marinum_M PFVISGAAVGLAAQ-FVFDPHFGLVQDLLHRVGVNAPDFYQDTPWALFMV
MUL_2126|M.ulcerans_Agy99 PFVISGAAVGLAAQ-FVFDPHFGLVQDLLHRVGVNAPDFYQDTPWALFMV
MLBr_01768|M.leprae_Br4923 PWICAPLAIAVLWR-WLLAPTDGAFSMVLR----HRIEWLSDPSLALPVV
MAV_2090|M.avium_104 PWICAPLAIAVLWR-WILAPTDGAVSAVLG----HSIEWLSDPSFALPLV
MAB_1717c|M.abscessus_ATCC_199 PWICAPLAIGVLWH-WMLAPTDGAVNALLG----QRVEWLTDPSLALPVV
MSMEG_0516|M.smegmatis_MC2_155 TMAVSTISQGIIFL-WLTDRDYGLVNAALNTVGISSQPFLASPSQALYVI
Mflv_3776|M.gilvum_PYR-GCK PMFITPIAVGLTFR-FLLNDQLGAIPAMLHAIGIDYDFFG--PGRALYTL
Mvan_2623|M.vanbaalenii_PYR-1 PMFITPIAVGLTFR-FLLNDQLGAIPAMLDAIGVEYDFFG--PGRALFTL
TH_2010|M.thermoresistible__bu PFLVTPVAGALMWKTAMLDPVFGIVNWLLSPFGVHQVDWV--SRFPLTSV
: : .: : * . * : . .* :
Mb2859c|M.bovis_AF2122/97 TITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQL
Rv2835c|M.tuberculosis_H37Rv TITYVWKNLGYTFVIYLAALQGVRRDLLEAAEIDGASRWAVFRRVLLPQL
MMAR_1898|M.marinum_M TVTYVWKNLGYTCVIYLAALQGVRRDLLEAAEIDGASRWTSFRRVLLPQL
MUL_2126|M.ulcerans_Agy99 TVTYVWKNLGYTCVIYLAALQGVRRDLLEAAEIDGASRWTSFRRVLLPQL
MLBr_01768|M.leprae_Br4923 SAVVVWTNVGYVSLSFLAGLLSIPEDINAAARTDGADAWQRFWRITLPML
MAV_2090|M.avium_104 SAVVVWTNVGYVSLSFLAGLLAIPEDIHAAARTDGANAWQRFWRITMPML
MAB_1717c|M.abscessus_ATCC_199 AAVSVWTNVGYVALFFMAGLLAIPGDVHNAARVDGATAWQRFRRITLPML
MSMEG_0516|M.smegmatis_MC2_155 VAMTIWGWTGFSVIVYLAALQGVPAELHEAAAIDGASAFTRFRTITVPLL
Mflv_3776|M.gilvum_PYR-GCK AFIDVWQWTPFMVLLLLAGLESIPKEPLDAARVDGARGLYVLRRVTLPLL
Mvan_2623|M.vanbaalenii_PYR-1 AFIDVWQWTPFMVLLLLAGLESIPKEPLDAARLDGASGLYVLRRVTLPLL
TH_2010|M.thermoresistible__bu MINLVWQWTPFMMLLILAGLQSMPRDILEAGRVDGAGTFQLFRELTLPHL
:* : : :*.* .: : *. *** : : :* *
Mb2859c|M.bovis_AF2122/97 RPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNF
Rv2835c|M.tuberculosis_H37Rv RPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYVETFRNF
MMAR_1898|M.marinum_M RPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYLETFRNF
MUL_2126|M.ulcerans_Agy99 RPTTFFLSITVLINSLQVFDVINVMTRGGPEGTGTTTMVYQVYLETFRNF
MLBr_01768|M.leprae_Br4923 RPTMFFVLVTGIVSTAQVFDTVYALTDGGPKSR-TDLVAHRIYAEAFGSA
MAV_2090|M.avium_104 RPTTFFVLVTGIVSSAQVFDTVYALTGGGPAGS-TDLVAHRIYAEAFGSA
MAB_1717c|M.abscessus_ATCC_199 RPTFFFVLVTGVVSAVQTFDTVYALTSGGPQNR-TDLAAHRVYAEAFEAA
MSMEG_0516|M.smegmatis_MC2_155 GPANIFLVVWLTINALQLFDEVYATTRGGPLRA-TTVIVYYLWDRAFVQF
Mflv_3776|M.gilvum_PYR-GCK APVLVVAILLRSLDAMKVFEYVFATTRGG-PGTETETLQYFIYQTGIQFF
Mvan_2623|M.vanbaalenii_PYR-1 APVLVVAILLRCLDAMKVFEYVFATTRGG-PGTETETLQYFIYQTGIQFF
TH_2010|M.thermoresistible__bu RRFIELGAVLGAIYLVNTFDPIYMMTQGG-PGTASSNLPFYIYQRAFLGF
. : : : *: : * ** : . :: :
Mb2859c|M.bovis_AF2122/97 RAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ-----
Rv2835c|M.tuberculosis_H37Rv RAGYGATVATIMFLVLLAVTYYQVRVMDRGQRQ-----
MMAR_1898|M.marinum_M RAGYGATIATMMFLFLLVVTYYQVRVMDRGQQQ-----
MUL_2126|M.ulcerans_Agy99 RAGYGATIATMMFLFLLVVTYYQVRVMDRGQQQ-----
MLBr_01768|M.leprae_Br4923 AIGRASVMAVLLFVVLFGVTVVQHLYFQRRISYELT--
MAV_2090|M.avium_104 AIGRASVMAVVLFVILIGVTLVQHLYFRRRISYDLT--
MAB_1717c|M.abscessus_ATCC_199 HVGRSAAMSLILFLILVTITVIQHRYFRARVSYDLV--
MSMEG_0516|M.smegmatis_MC2_155 DAGYAAAMAYVLFVVILVITAVQFRLARRYVHT-----
Mflv_3776|M.gilvum_PYR-GCK RLGSASSMAFVVLIVVLAAIVFAFRRMDRAREAGIR--
Mvan_2623|M.vanbaalenii_PYR-1 RLGSASSMAFIVLVVVLAVIVIAFRRMERTKSR-----
TH_2010|M.thermoresistible__bu DIGQAAAMGVIVVIFTIIIATFALRLIFRSFTGKEEAA
* .: :. ::.:. .