For questions or suggestions e-mail us at: ioerger@cs.tamu.edu

M. smegmatis MC2 155 MSMEG_1726 (-)

annotation: transposase
coordinates: 1819676 - 1820689
length: 337

MDAYNDLRDIQIPTRKAAEVTGMHRSTATRRAKPAPAPADRAPRPVPVNKLTESECTRVVEVLNSARFVD
AAPMQVWATLLDEGSYLCSVSTMYRVLNANKLVKERRRLARHRKAVCPELVATAPRQVYSWDITKLAGPV
KGVYYDAYVMIDIHSRYIVGVHVHARECGQLAKEMMEQIFGTYGIPHVVHADRGTSMTSNTVAGLLSDLG
VIRSHSRPKVSNDNPYSESWFKTLKYAPAFPERFESIHHARDFMDRFVQWYNHEHRHSGIGLHTPADVFY
GLAGGKDTQRRAVLADARARHPRRFGRDTAPKVIDLPESAAINPPKPAEQETETEAA
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. smegmatis MC2 155MSMEG_1726--100% (337)transposase
M. smegmatis MC2 155MSMEG_4133-0.0100.00% (337) transposase
M. smegmatis MC2 155MSMEG_1862-0.099.41% (337) transposase

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb3460c-2e-7252.80% (286) transposase
M. gilvum PYR-GCKMflv_4078-5e-4837.00% (300) integrase catalytic subunit
M. tuberculosis H37RvRv3430c-7e-7353.15% (286) transposase
M. leprae Br4923-----
M. abscessus ATCC 19977MAB_2088-1e-0624.23% (194) transposase
M. marinum MMMAR_4846-4e-0828.73% (181) transposase, ISMyma01_aa2
M. avium 104MAV_5037-2e-0931.43% (175) transposase
M. thermoresistible (build 8)TH_4372-1e-1029.20% (137) PUTATIVE Integrase, catalytic region
M. ulcerans Agy99-----
M. vanbaalenii PYR-1Mvan_0306-4e-4637.02% (289) integrase catalytic subunit

CLUSTAL 2.0.9 multiple sequence alignment


Mb3460c|M.bovis_AF2122/97           MIDTAIEEMIPLIGVRAACAATGRAPASYYRAHSKRLSAQSDTFTSTAVT
Rv3430c|M.tuberculosis_H37Rv        MIDTAIEEMIPLIGVRAACAATGRAPASYYRAHSKRLSAQSDTFTSTAVT
MSMEG_1726|M.smegmatis_MC2_155      -MDAYNDLRDIQIPTRKAAEVTG-----MHRSTATRRAKP-----APAPA
Mflv_4078|M.gilvum_PYR-GCK          ------------MTAAIGSQRQALAMIDLSRSTWHYRTNP-----RPPVS
Mvan_0306|M.vanbaalenii_PYR-1       -------------------------MIELSRSTWHYRSHP-----RPRVA
MAV_5037|M.avium_104                ----------------------------MALSTYYDTKAR--------VP
MAB_2088|M.abscessus_ATCC_1997      ---------------------MTRRVLKLARQPYYRWRAN--------PI
TH_4372|M.thermoresistible__bu      ----VSRFELIAAECAHHDVSKLAELLGVSRSGYYAWAAR-----QRRVE
MMAR_4846|M.marinum_M               -------------------MLGVSERFACRVTGQHRATQR-------HEP
                                                                                      

Mb3460c|M.bovis_AF2122/97           DPSGPRESAQPRALSAAEREHVLAVLNSQRFADMAPAVVYATLLDEGIYL
Rv3430c|M.tuberculosis_H37Rv        DPSGPRESAQPRALSAAEREHVLAVLNSQRFADMAPAVVYATLLDEGIYL
MSMEG_1726|M.smegmatis_MC2_155      DR-APR-PVPVNKLTESECTRVVEVLNSARFVDAAPMQVWATLLDEGSYL
Mflv_4078|M.gilvum_PYR-GCK          DPLPQKHRAYPSRIDEADRAVIRDKILAGWEAGSSVDHAFAASWDEGVML
Mvan_0306|M.vanbaalenii_PYR-1       NPMPHKDRAYPSRIGVADRAVIAEQIIAGWLAGVSVDQSFATMWDAGVLL
MAV_5037|M.avium_104                SARALRDAVLGPALCQLWKDNYCVYG-ARKLWKTARREGHDVGRDQVARL
MAB_2088|M.abscessus_ATCC_1997      TDAELVEAYRANALFDAHGE--DPEFGYRYLVEEAREAGEPMAERTAWRI
TH_4372|M.thermoresistible__bu      LSPRQQWRRDLEVKILAHWQASGRTYGSPRITADLHAEGVGVSENTVAKI
MMAR_4846|M.marinum_M               VAGTPADPDAALREWLRDYANKHPRRGFRPAYHDARGEGWEVNHKKVQRL
                                                                                     :

Mb3460c|M.bovis_AF2122/97           CSESTMYRLLRERGQTGDR----RRQATHPAAVKPELVAHQPNSVWSWDI
Rv3430c|M.tuberculosis_H37Rv        CSESTMYRLLRERGQTGDR----RRQATHPAAVKPELVAHQPNSVWSWDI
MSMEG_1726|M.smegmatis_MC2_155      CSVSTMYRVLNANKLVKER----RRLARHRKAVCPELVATAPRQVYSWDI
Mflv_4078|M.gilvum_PYR-GCK          ASRRSWWRIAAAIEDQSARPVAPTRSTSKTPRQAPVLKATGPQQIWSWDI
Mvan_0306|M.vanbaalenii_PYR-1       ASRRSWWRIAAVI-DQSLRPVAPTRATNKTPRSAPVLKATGPQQIWSWDI
MAV_5037|M.avium_104                MRAAGIEGVRRGKRVRTTK--ADPAAARHPDLVHRNFAAAAPNQLWVTDL
MAB_2088|M.abscessus_ATCC_1997      CSQQQLWSVFGKKRGKNGK----PGPPVHDDLVQRDFTAETPNMLWLSDI
TH_4372|M.thermoresistible__bu      MAEMGIEGISPRTFKVKTT-QVDPTASFPPDRVGRAFDQGRLDAVWTSDI
MMAR_4846|M.marinum_M               WREEGLRVPQRRKRKRHGT-----------STAPPEVVADAPDRVWAVDF
                                                                        .       ::  *:

Mb3460c|M.bovis_AF2122/97           TKLRGPAKWSYYYLYVILDIFSRYVVGWMVASRESKVLAERLIAQTLAAQ
Rv3430c|M.tuberculosis_H37Rv        TKLRGPAKWSYYYLYVILDIFSRYVVGWMVASRESKVLAERLIAQTLAAQ
MSMEG_1726|M.smegmatis_MC2_155      TKLAGPVKGVYYDAYVMIDIHSRYIVGVHVHARECGQLAKEMMEQIFGTY
Mflv_4078|M.gilvum_PYR-GCK          TDLRSPWRGVAFKAYSILDIYSRKIVGWRVEERECDDLAVDMFEAAFAGH
Mvan_0306|M.vanbaalenii_PYR-1       TDLHSPWRGVSFKTYSIVDIFSRKIVGWRVEERECDDLAVEMFKTAIAEH
MAV_5037|M.avium_104                TFVP-TWAGVAY-VCFIIDAHSRMIVGWRVASHMRTSMVLDALEMARWSR
MAB_2088|M.abscessus_ATCC_1997      TEHY--TGDGKLYLCAIKDAFSNRIVGYSIDSRMKSRLATAALRNAVGRR
TH_4372|M.thermoresistible__bu      TYLT--CGEGDAYLCAIRDEHSRRVLGWSLADHMRTELVEAAVDAAVFTR
MMAR_4846|M.marinum_M               QFDVT-TDGRPIKIVSIIDEHTRECLGGMVERSITGDHLTEELGRIAAGR
                                                    : * .:.  :*  :            .       

Mb3460c|M.bovis_AF2122/97           HISADQLTLHADRGSSMSSKPVALLLADLGVTKSHSHPHTSNDNPLSEAQ
Rv3430c|M.tuberculosis_H37Rv        HISADQLTLHADRGSSMSSKPVALLLADLGVTKSHSRPHTSNDNPLSEAQ
MSMEG_1726|M.smegmatis_MC2_155      GIPH---VVHADRGTSMTSNTVAGLLSDLGVIRSHSRPKVSNDNPYSESW
Mflv_4078|M.gilvum_PYR-GCK          GLPA---VVHADSGPAMRSTVLKDLLAGLKIGQTHNRPRVSNDNPFSESE
Mvan_0306|M.vanbaalenii_PYR-1       GPPA---VVHADSGPAMRSTVLKDLLAGLGIGQTHIRPHVSNDNPFSESE
MAV_5037|M.avium_104                GTTLQDLICHSDAGSQFTSIRYGERLAEIGAVPSIGTVGDSFDNALAETV
MAB_2088|M.abscessus_ATCC_1997      GVVAG-CVVHTDRGSQFRSRKFVQALHHHGMVGSMGRVGAAGDNAAMESF
TH_4372|M.thermoresistible__bu      AGHVAGTVMHSDRGSQFTSYDMAQACTRHGLLRSMGATGICWDNAGSESL
MMAR_4846|M.marinum_M               GALP--AVLRCDNGPELACSAMADWAEGQ-VGLHFIPPGEPWRNGYVESF
                                             : * *. : .                        *   *: 

Mb3460c|M.bovis_AF2122/97           ----FKTLKYRPDFPKRFESIEAARVHCDRFFG-WYNHEHKHSGIGLHTP
Rv3430c|M.tuberculosis_H37Rv        ----FKTLKYRPDFPKRFESIEAARVHCDRFFG-WYNHEHKHSGIGLHTP
MSMEG_1726|M.smegmatis_MC2_155      ----FKTLKYAPAFPERFESIHHARDFMDRFVQ-WYNHEHRHSGIGLHTP
Mflv_4078|M.gilvum_PYR-GCK          ----FRTMKYRPNYPGVFTDLDSARAWVSAYVS-WYNQHHRHSGVELFTP
Mvan_0306|M.vanbaalenii_PYR-1       ----FRTMKYRPNYPGVFDDLNTAHAWVQAYVR-WYNQHHRHSGIALFTP
MAV_5037|M.avium_104                NGYYKAELIYGPARTGPWKTVEDVELATLSWVY-WHNTSRLHSYLGDIPP
MAB_2088|M.abscessus_ATCC_1997      ----FSLLQKNVLDRRRWATREELRIAIVTWIERTYHRRRRQGALGRLTP
TH_4372|M.thermoresistible__bu      ----WSTVKHEYYKRHAFTTYANLTAGLDNYIR-FYNHERRHSSLGMISP
MMAR_4846|M.marinum_M               N----SRIRDECLNINSFWSLAQARVVIGDWKH-EYNHHRRHSSLGYLPP
                                           :         :            :    ::  : :. :   .*

Mb3460c|M.bovis_AF2122/97           ADVHYGRADQIRRHRATVLDTAYRDHLERIRSQTTRATRATGLQRDQPTT
Rv3430c|M.tuberculosis_H37Rv        ADVHYGRADQIRRHRATVLDTAYRDHLERIRSQTTRATRATGLQRDQPTT
MSMEG_1726|M.smegmatis_MC2_155      ADVFYGLAGGKDTQRRAVLADARARHPRRFGRDT--APKVIDLP------
Mflv_4078|M.gilvum_PYR-GCK          DSVHDGTWAQLWDRRDTALQAYYDAHPERFRNRPRTKSPS----------
Mvan_0306|M.vanbaalenii_PYR-1       DEVHNGSWTRQWMHRDHILQAYYHAHPERFRARPHTKSPA----------
MAV_5037|M.avium_104                AEFEAAFYDAYRTDQPLIGIQ-----------------------------
MAB_2088|M.abscessus_ATCC_1997      VEYEAIMTTTASQAA-----------------------------------
TH_4372|M.thermoresistible__bu      IDFDLSLDILLSTQV-----------------------------------
MMAR_4846|M.marinum_M               ARYAAACTHR----------------------------------------
                                                                                      

Mb3460c|M.bovis_AF2122/97           EGGPADSINPRKSCLRNVDRFRPGLLDLPAPAPVDLRRLLPSGQIR
Rv3430c|M.tuberculosis_H37Rv        EGGPADSINPRKSCLRNVDRFRPGLLDLPAPAPVDLRRLLPSGQIR
MSMEG_1726|M.smegmatis_MC2_155      ---ESAAINPPK----------------PAEQETETEAA-------
Mflv_4078|M.gilvum_PYR-GCK          ---PVVGINLPT-----------------ENDPDRLQAA-------
Mvan_0306|M.vanbaalenii_PYR-1       ---AIVGINLPT-----------------EKDPNRLHAA-------
MAV_5037|M.avium_104                ----------------------------------------------
MAB_2088|M.abscessus_ATCC_1997      ----------------------------------------------
TH_4372|M.thermoresistible__bu      ----------------------------------------------
MMAR_4846|M.marinum_M               ----------------------------------------------