For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
TAMPVDRPLPRPELAPREKEVLLAWIRTDSKDGVARQLHIAPTTVRTHLQRIRAKYAAVGRPATTKAALV ARAIQDGLIDVDDL*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_1197 | - | - | 100% (85) | transcriptional regulator, LuxR family protein |
| M. smegmatis MC2 155 | MSMEG_1301 | - | 2e-23 | 66.22% (74) | NanT3 |
| M. smegmatis MC2 155 | MSMEG_0105 | - | 2e-07 | 39.13% (69) | DNA-binding response regulator, LuxR family protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb0867c | narL | 9e-07 | 37.68% (69) | nitrate/nitrite response transcriptional regulatory protein |
| M. gilvum PYR-GCK | Mflv_4904 | - | 6e-25 | 63.86% (83) | two component LuxR family transcriptional regulator |
| M. tuberculosis H37Rv | Rv0844c | narL | 9e-07 | 37.68% (69) | nitrate/nitrite response transcriptional regulatory protein |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_0060 | - | 5e-07 | 39.13% (69) | nitrate/nitrite response transcriptional regulatory protein |
| M. marinum M | MMAR_4782 | narL | 5e-08 | 39.13% (69) | nitrate/nitrite response regulator protein NarL |
| M. avium 104 | MAV_0872 | - | 1e-07 | 39.71% (68) | DNA-binding response regulator, LuxR family protein |
| M. thermoresistible (build 8) | - | - | - | - | - |
| M. ulcerans Agy99 | MUL_0351 | narL | 4e-08 | 39.13% (69) | nitrate/nitrite response regulator protein NarL |
| M. vanbaalenii PYR-1 | Mvan_1515 | - | 2e-24 | 62.65% (83) | two component LuxR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
Mb0867c|M.bovis_AF2122/97 --MSNPQPEKVRVVVGDDHPLFREGVVRALSLSG-SVNVVGEADDGAAAL
Rv0844c|M.tuberculosis_H37Rv --MSNPQPEKVRVVVGDDHPLFREGVVRALSLSG-SVNVVGEADDGAAAL
MMAR_4782|M.marinum_M --MDVTKTEKVRVVVGDDHPLFREGVVRALSLSG-SVNVVGEADDGAAAL
MUL_0351|M.ulcerans_Agy99 --MDVTKTEKVRVVVGDDHPLFREGVVRALSLSG-SVNVVGEADDGAAAL
MAV_0872|M.avium_104 ------------------------------------MNVVGEAEDGSAAL
MAB_0060|M.abscessus_ATCC_1997 --MQVSG-ELVRVVVGDDHPLFREGVVRALTASG-QITVVAEAENGTGAL
Mflv_4904|M.gilvum_PYR-GCK MSREDDTRRPVRIAIIDDHDVVHAGIQAWCAEADPPIDLADSFQRPDEYF
Mvan_1515|M.vanbaalenii_PYR-1 MSRKDGARRAVRIAIIDDHDVVHAGIRAWCEEADPPIELVGSFLRPSEYF
MSMEG_1197|M.smegmatis_MC2_155 --------------------------------------------------
Mb0867c|M.bovis_AF2122/97 ELIKAHLPDVALLDYRMPGMDG-AQVPAAVRSYELPTRVLLISAHDEPAI
Rv0844c|M.tuberculosis_H37Rv ELIKAHLPDVALLDYRMPGMDG-AQVAAAVRSYELPTRVLLISAHDEPAI
MMAR_4782|M.marinum_M ELIKTHLPDVALLDYRMPRMDG-AQVAAAVRSNELPTRVLLISAHDESAI
MUL_0351|M.ulcerans_Agy99 ELIETHLPDVALLDYRMPRMDG-AQVAAAVRSNGLPTRVLLISAHDESAI
MAV_0872|M.avium_104 ELIKSHQPDVALLDYRMPGMDG-AQVAAAVRADGLATRVLLISAHDESAI
MAB_0060|M.abscessus_ATCC_1997 ELIREHRPDVALVDYRMPELDG-TQVAAAVRRDELPTRVLLLSAHDDAAI
Mflv_4904|M.gilvum_PYR-GCK AKYPDAADDVDVVLLDLQIEGNRPDFDALSKLAASGRRVIVYSHITADEV
Mvan_1515|M.vanbaalenii_PYR-1 SKYPTATDQVDVVLFDVQIEGNRPDFDTLSKLAERDQPVVVYSHITTDEV
MSMEG_1197|M.smegmatis_MC2_155 --------------------------------------------------
Mb0867c|M.bovis_AF2122/97 VYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQ
Rv0844c|M.tuberculosis_H37Rv VYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQ
MMAR_4782|M.marinum_M VYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQ
MUL_0351|M.ulcerans_Agy99 VYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQ
MAV_0872|M.avium_104 VYQALQQGAAGFVLKDSTRSEIVKAVLDCAQGRDVVAPALVGGLAAEIRQ
MAB_0060|M.abscessus_ATCC_1997 VYRALEEGAAGFLSKESTRTELVGAVLDCARGRDVVAASLTAGLAGEIRK
Mflv_4904|M.gilvum_PYR-GCK ILTCLELGAVTYLVKSEGKRHLIEAVHSAHTSTPYVGP----RMGKAMLN
Mvan_1515|M.vanbaalenii_PYR-1 ILTSLDLGAITYLVKSEGRRHLIEAIHAAHTDTPYVGP----RMGNAMLN
MSMEG_1197|M.smegmatis_MC2_155 --------------------------------------------MTAMPV
:
Mb0867c|M.bovis_AF2122/97 RAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEK
Rv0844c|M.tuberculosis_H37Rv RAAPVAPVLSAREREVLNRIACGQSIPAIAAELYVAPSTVKTHVQRLYEK
MMAR_4782|M.marinum_M RAAPMAPVLSAREREVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEK
MUL_0351|M.ulcerans_Agy99 RAAPMAPVLSAREREVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEK
MAV_0872|M.avium_104 RAEPTGPVLSAREREVLHRIARGQSIPAIAGELYVAPSTVKTHVQRLYEK
MAB_0060|M.abscessus_ATCC_1997 RAQPAGPSLSTREREVLRMIAAGQTVPAIARALFLAPSTVKTHVQRLYEK
Mflv_4904|M.gilvum_PYR-GCK DSTMGRIKLTDREKQVLIAWFQTESKDLVAERLFIAPTTVRTHLQRARAK
Mvan_1515|M.vanbaalenii_PYR-1 DSTVGRIKLTDREKQVLVAWFQTESKDLVAKRLFIAPSTVRTHLQRARAK
MSMEG_1197|M.smegmatis_MC2_155 DRPLPRPELAPREKEVLLAWIRTDSKDGVARQLHIAPTTVRTHLQRIRAK
*: **::** :: :* *.:**:**:**:** *
Mb0867c|M.bovis_AF2122/97 LG-----VSDRAAAVAEAMRQRLLD-----
Rv0844c|M.tuberculosis_H37Rv LG-----VSDRAAAVAEAMRQRLLD-----
MMAR_4782|M.marinum_M LG-----VSDRAAAVAEAMRQGLLD-----
MUL_0351|M.ulcerans_Agy99 LG-----VSDRAAAVAEAMRQGLLD-----
MAV_0872|M.avium_104 LG-----VSDRAAAVAEAMRQGLLS-----
MAB_0060|M.abscessus_ATCC_1997 LG-----VGDRAAAVAEAMRRGLLE-----
Mflv_4904|M.gilvum_PYR-GCK YAGVGRPASTKSALLARAIEDGILSLKDLY
Mvan_1515|M.vanbaalenii_PYR-1 YAGVGRPAPTKSALLARAIEDGILSLNDLY
MSMEG_1197|M.smegmatis_MC2_155 YAAVGRPATTKAALVARAIQDGLIDVDDL-
. . ::* :*.*:. ::.