For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MTAVRQPSALLPTLGGAYYTSAAVFAAEQQHVFESMWFCVVRAADLNEPGQFKAVQVGRESVLLVRGRDR RLRAFLNICRHRGALLCTEPEGQVRRNLRCPYHSWTYGLDGTLIAAPNIAELTDTDGASIDRHRYGLVAV ALREWLGYAWVCLAEDPPSFEDDVVGSVTARLGDVSAIDTYRIEALQVGRRVSYDVAANWKLIVENFMEC YHCATIHPELTRVIPEFARGQAAQRSVGRGAEFGSAVAGFTVDGRAGFTALPGIRPEQDRRYFAITVKPT VFINLVPDHAIIHRMFPIAADRTIVECDWLYAPEVAAAGDIAHSVELFHRVNEQDFDACQRTQPAMSSRA YRTGGVLVPAEHHIAEFHQWVIARIGTPAVTG
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. marinum M | MMAR_4422 | - | - | 100% (382) | dioxygenase |
M. marinum M | MMAR_0212 | - | 1e-21 | 31.60% (231) | oxidoreductase |
M. marinum M | MMAR_4744 | - | 3e-20 | 30.54% (203) | dioxygenase |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3186c | - | 2e-23 | 28.45% (355) | dioxygenase |
M. gilvum PYR-GCK | Mflv_3082 | - | 1e-165 | 73.12% (372) | Rieske (2Fe-2S) domain-containing protein |
M. tuberculosis H37Rv | Rv3161c | - | 6e-23 | 28.17% (355) | dioxygenase |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_4370c | - | 4e-19 | 29.39% (228) | putative large terminal subunit of phenylpropionate dioxygenase |
M. avium 104 | MAV_5278 | - | 2e-23 | 32.05% (234) | Rieske (2Fe-2S) domain-containing protein |
M. smegmatis MC2 155 | MSMEG_0657 | - | 5e-61 | 39.83% (354) | Rieske (2Fe-2S) domain-containing protein |
M. thermoresistible (build 8) | TH_3877 | - | 3e-23 | 31.40% (207) | PUTATIVE Rieske (2Fe-2S) domain protein |
M. ulcerans Agy99 | MUL_3820 | - | 2e-14 | 30.29% (175) | ring-hydroxylating dioxygenase, large terminal subunit |
M. vanbaalenii PYR-1 | Mvan_4319 | - | 3e-28 | 31.58% (266) | Rieske (2Fe-2S) domain-containing protein |
CLUSTAL 2.0.9 multiple sequence alignment MMAR_4422|M.marinum_M --------------------------M---TAVRQPSALLPTLGGAYYTS Mflv_3082|M.gilvum_PYR-GCK -----------------------------------MTALMATLEGHYYTS MSMEG_0657|M.smegmatis_MC2_155 MDHFPAADYPDCMFKQIGPAPVPADDL---AAALAPFGHSRMLPREAYVD Mb3186c|M.bovis_AF2122/97 ----------MLSTDNRAELGDILTDI---GDYLDDNPPALSLPPAAYTS Rv3161c|M.tuberculosis_H37Rv ----------MLSTDNRAELGDILTDI---GDYLDDNPPALSLPPAAYTS TH_3877|M.thermoresistible__bu ----------------MKKWPKPAEGS---WTEHYPELGTGPVSFRDSTS MAV_5278|M.avium_104 -------------MAAAAGNPARTRDE---DAIGTPPPGPTLVPAERYYS Mvan_4319|M.vanbaalenii_PYR-1 -----------MPATRPGEWLDPASGLGLGLDDVQPGTFNMTISTDRYTC MUL_3820|M.ulcerans_Agy99 -----------MDRDQLIDLTRRALKLAR-DKTTDLAPHQHAVDAREYTS MAB_4370c|M.abscessus_ATCC_199 -----MASLPRPVAVAQGALCRPQALVRDIDVSGLVDSHGGLLDRVIFTD : MMAR_4422|M.marinum_M AAVFAAEQQHVFESMWFCVVRAADLNEPGQFKA--VQVGRESVLLVRGRD Mflv_3082|M.gilvum_PYR-GCK AEVFAAEQQGIFENMWFCAVRTSDLEKPGKFTK--VQVGRESVLLVRGRD MSMEG_0657|M.smegmatis_MC2_155 PAVFAWEQQAIFS-GWTCVGHAADLETPGAQRA--VGSGANGVLLVRGED Mb3186c|M.bovis_AF2122/97 SELWQLERERIFNRSWMLVAHVDQLAKTGDYVT--VSVAGEPVMVVRDVD Rv3161c|M.tuberculosis_H37Rv SELWQLERERIFNRSWMLVAHVDQVAKTGDYVT--VSVAGEPVMVVRDVD TH_3877|M.thermoresistible__bu PEFYELEREAVFKRAWLHVGRVEELPRAGSYLTKNIDVAKTSVIVVRGRD MAV_5278|M.avium_104 PAFAALEVERMWPRVWQLACMVDHVATPGDYFE--YRCGPYGVLIVRDDD Mvan_4319|M.vanbaalenii_PYR-1 PDYAARERGSIWMRTWQIAGRVEDLPKPGDWKK--YEILDQSFIIVRGKD MUL_3820|M.ulcerans_Agy99 LDRHERDR-AMVLDSPQLVGYSSELPGPDTYRT--KTIMGRSILLTRAAD MAB_4370c|M.abscessus_ATCC_199 GELYRQELRRVFAPSWLFLAHADQFHRPGDFFT--TYMGEDPVIVSMDKN : : .. .. .:: : MMAR_4422|M.marinum_M RRLRAFLNICRHRGALLCT-----EPEGQVRRNLRCPYHSWTYGLDGTLI Mflv_3082|M.gilvum_PYR-GCK GLLRAFLNVCRHRGAQLCS-----ESEGEVRRTLRCPYHSWTYALDGKLV MSMEG_0657|M.smegmatis_MC2_155 NRVRAFANACRHRGHELLS-----CGASAKRRSIVCPYHAWSYRLDGSVR Mb3186c|M.bovis_AF2122/97 GQLHALSPICRHR-LMLMV-----EPGAGRIDTLTCQYHLWRYGLDGRLR Rv3161c|M.tuberculosis_H37Rv GQLHALSPICRHR-LMLMV-----EPGAGRIDTLTCQYHLWRYGLDGRLR TH_3877|M.thermoresistible__bu EQIRAFYNICRHRGNKLVWNDYPHEEVKGACRQFTCKYHGWRYDLKGDLT MAV_5278|M.avium_104 GALRAFQNVCRHRGNSLCS------GSGSGLRELKCGYHGWTWDLAGALK Mvan_4319|M.vanbaalenii_PYR-1 DVLRGFVNACRHRGNALCT-----TDTGNAKRGFLCQYHLWSYDLEGKLK MUL_3820|M.ulcerans_Agy99 RAVRAFDNVCLHRQSRVAT-------GCGTALRFTCPYHGWTYDNGGRLV MAB_4370c|M.abscessus_ATCC_199 RRIRAFLNSCRHRGARVCR------ADYGVTRGFTCTYHGWAYDLEGKLI ::.: * ** : : * ** * : * : MMAR_4422|M.marinum_M AAPNIAELTDTDGASIDRHRYGLVAVA-LREWLGYAWVCLAEDP---PSF Mflv_3082|M.gilvum_PYR-GCK AAPNIGTLTDDAGSPIDRYRYGLIPVA-LTEWLGYAWVCLSDTP---PPF MSMEG_0657|M.smegmatis_MC2_155 NAPGFKDVDG-----FDPGGFGLVELR-LVDWHGWLFVDPSGQD---ADF Mb3186c|M.bovis_AF2122/97 GAPHMAANLD-----FNRRECRLPQFA-VATWNGLVWINLDADA---EPI Rv3161c|M.tuberculosis_H37Rv GAPHMAANLD-----FNRRECRLPQFA-VATWNGLVWINLDADA---EPI TH_3877|M.thermoresistible__bu FVQQESEFFD-----LDTARYGLKPVN-CDVWNGFIFINFDPEPKWSLR- MAV_5278|M.avium_104 RVPDRKGFGS-----LRLSDYPLIPAR-VDTWAGLVFVNLDPDA---MPL Mvan_4319|M.vanbaalenii_PYR-1 GLLRENLAGP-----IDKTENSLLQVS-VDTFAGFIFLNPDPDAAPLREY MUL_3820|M.ulcerans_Agy99 GLPGREGFPG-----IAVGSDGLTELP-ATEFAGFLWVSLHPAARLDVPA MAB_4370c|M.abscessus_ATCC_199 SVPNEEGYPDS----FSTDDWGLVEVPHVDSYHGLIFGTWNPAPVGLRES : * : * : MMAR_4422|M.marinum_M EDDVVGSVTARLGDVSAIDTYRIEALQVGRRVSYDVAANWKLIVENFM-E Mflv_3082|M.gilvum_PYR-GCK ED-VVAEATRTLGDADAINRYGIGGLDVGHRVVYEVAANWKLIVENFM-E MSMEG_0657|M.smegmatis_MC2_155 AT-------HVAGLEEVVSPYRPEDLTIVARHSYELAANWKIIAENYQ-E Mb3186c|M.bovis_AF2122/97 AA-------HLDLTDDEFAGYRLGEMVQVESWSHEWRANWKVAAENGH-E Rv3161c|M.tuberculosis_H37Rv AA-------HLDLTDDEFAGYRLGEMVQVESWSHEWRANWKVAAENGH-E TH_3877|M.thermoresistible__bu --------EFLGPMITALDDYPFGLMTERYEFEAHNNSNWKIFADAFQ-E MAV_5278|M.avium_104 PE-------YLEAIPEDIAWCRLDEFRCYATLTVEVDANWKTIADGYS-E Mvan_4319|M.vanbaalenii_PYR-1 LG---------EDVVSLLEPYNIEQFTTVMDVTEAIECNWKVVMDAFE-E MUL_3820|M.ulcerans_Agy99 ---------HLGPLAGELQSWGIGRWSPLGEKVLGSPIDWKLATDTFA-E MAB_4370c|M.abscessus_ATCC_199 LG------DMAWYMDAMLDHDSEGTVVVGGVHKWVLDGNWKLAAEQFATD . :** : : MMAR_4422|M.marinum_M CYHCATIHPELTRVIPEFARGQAAQRSVGRG------------------- Mflv_3082|M.gilvum_PYR-GCK CYHCSSIHPELVDVLPEFAKGQAAQANIGLG------------------- MSMEG_0657|M.smegmatis_MC2_155 CYHCSSIHPELSRISPPTSGENLELPGAWMGG------------------ Mb3186c|M.bovis_AF2122/97 NYHVLGLH---RQTLEPFVPGGGDLDVRQYSR------------------ Rv3161c|M.tuberculosis_H37Rv NYHVLGLH---RQTLEPFVPGGGDLDVRQYSR------------------ TH_3877|M.thermoresistible__bu YYHVPSLHSQQVPSAVRQPNATFECGHFQIDG------------------ MAV_5278|M.avium_104 TYHIQTLHPELLRCVDDIHAPQQIWRHTGKSDQPYGVPSPRFEGALSDEE Mvan_4319|M.vanbaalenii_PYR-1 GYHINGIHPQLLQVLHINPKTARYRFFENHSVAMAPFEVVGAGVQDQVAG MUL_3820|M.ulcerans_Agy99 NYHFATVHRRTFATIARSNCTVFDSYGPHHR------------------- MAB_4370c|M.abscessus_ATCC_199 WYHVNMSHASALMVMAPQGKAPKDEIVHRTGR------------------ ** * MMAR_4422|M.marinum_M --AEFGSAVAG----------FTVD---------------------GRAG Mflv_3082|M.gilvum_PYR-GCK --AEFGSEVAG----------FTVD---------------------GGAG MSMEG_0657|M.smegmatis_MC2_155 -WMSIIDGAET----------MSLD---------------------GRSG Mb3186c|M.bovis_AF2122/97 -WALRLRVPFT----------VPVE---------------------AKS- Rv3161c|M.tuberculosis_H37Rv -WALRLRVPFT----------VPVE---------------------AKS- TH_3877|M.thermoresistible__bu -PHRLVSTAGTRRWLMPPEYMYPVERATRSGLVGPW--------RTPKTH MAV_5278|M.avium_104 VWDAYVSTQGALMGAAEGTPFPAADRRPGQTVADLI--------ADRTRA Mvan_4319|M.vanbaalenii_PYR-1 ILALPETFPGTVAVIPRFQELIAPYQDSDGNVAFPDGVTARALLQQATRE MUL_3820|M.ulcerans_Agy99 ----LIFPLNT---------ILELEN------------------------ MAB_4370c|M.abscessus_ATCC_199 ---QYVDPNGHGAG-------FPVHPK-------------------NRFD MMAR_4422|M.marinum_M FTALPGIRP-----EQDRRYFAITVKPTVFINLVPDHAIIHRMFPI---- Mflv_3082|M.gilvum_PYR-GCK FERLPGIAD-----DQDRRYYAITVKPTVFINLVPDHVIFHRMYPV---- MSMEG_0657|M.smegmatis_MC2_155 GVAIAGLSE-----HELRTVMYLVGYPNLLVSLHPDYVMTHLMTPL---- Mb3186c|M.bovis_AF2122/97 ----LQLNE-----VQKSNLVVLWTFPNSALAIAGERVVWFGFIPQ---- Rv3161c|M.tuberculosis_H37Rv ----LQLNE-----VQKSNLVVLWTFPNSALAIAGERVVWFGFIPQ---- TH_3877|M.thermoresistible__bu FSAGLNPGG-----IEPWGITNFQIFPNLEILIYHGWYLLYQYWPT---- MAV_5278|M.avium_104 FAATRGVDLGWADTDRITRLHQYNVFPNMTFLTNADHLTVMCSRPA---- Mvan_4319|M.vanbaalenii_PYR-1 VLTGMGLDVSRLTDDQMVDNQGWVLFPNYFMTVRAGECHVIMSVPH---- MUL_3820|M.ulcerans_Agy99 -VPEGQWDP------FHHMVVIYALFPNVVLSVTIANGELFRIYPG---- MAB_4370c|M.abscessus_ATCC_199 ARVVHQWTDYGALRERLGEARVQGPLTNGHATVFPNLSYLPVNGSVRIWH .. . MMAR_4422|M.marinum_M AADRTIVECDWLYAPEVA-AAG-DIAHSVELFHRVN---------EQDFD Mflv_3082|M.gilvum_PYR-GCK AADRTVVECDWLYTREVL-GSGRDVSRSVELFHRVN---------MQDFD MSMEG_0657|M.smegmatis_MC2_155 AVDRTHVECAWAFPREAAERPGFDPAYAVDFWDLTN---------RQDWA Mb3186c|M.bovis_AF2122/97 SIDRVQVLGGVLTTPELAADAAATAQTSQFVMAMIN---------DEDRL Rv3161c|M.tuberculosis_H37Rv SIDRVQVLGGVLTTPELAADAAATAQTSQFVMAMIN---------DEDRL TH_3877|M.thermoresistible__bu SYNTHRFEAYTAFHPARTVRERIEHEVASVVLKEFA---------LQDAG MAV_5278|M.avium_104 PDPAAAPDKGELVMFLTTRMPPGAPRTKPTDVRMSAGEAEPGLVLTQDIA Mvan_4319|M.vanbaalenii_PYR-1 PDGDPNRCIWHVASYMYVPQDFRDAVRAEALVVDTPGSYKYFEALQQDYE MUL_3820|M.ulcerans_Agy99 DRPGSSITVHQNSTPLDLSDESVATGAQAVFDYAHATVR------DEDYR MAB_4370c|M.abscessus_ATCC_199 PKGPDKMEVWAWTIVDRSMPEEVRDAQRLYNLRTFGPTGIFEQDDGENWS :: MMAR_4422|M.marinum_M ACQRTQPAMSS--RAYRTGGVLVPAEHHIAEFHQWVIARIGTPAVTG--- Mflv_3082|M.gilvum_PYR-GCK ACERTQPAMSS--RAYRSGGVLVPAEHHLAEFHRWVVSRLATPV------ MSMEG_0657|M.smegmatis_MC2_155 ACESVQRGLSS--PHARPG-PLAPDEDGVYQFVTRVARAYQGA------- Mb3186c|M.bovis_AF2122/97 GLEAVQVGAGS--RFAERGHLSSKEWPGMLAFYRNLAMALVGDHPGAS-- Rv3161c|M.tuberculosis_H37Rv GLEAVQVGAGS--RFAERGHLSSKEWPGMLAFYRNLAMALVGDHPGAS-- TH_3877|M.thermoresistible__bu MLGGTQAALEYGLDEPIVDEFPLSDQEILVRHLHKVVVDWVEEYQSERTA MAV_5278|M.avium_104 VLAGLQRGMHQ---PGFTHLVLSSEERRVINMHRNLERYLDLPAAQRMSG Mvan_4319|M.vanbaalenii_PYR-1 QMPRQQKGLRN---DRLDHMSLVKEEVVIAHYHSVVDRHLADSVTADTAR MUL_3820|M.ulcerans_Agy99 LAETLQTNLES---GARQRLVFGRNEPGLQHRHITWAQALETPG------ MAB_4370c|M.abscessus_ATCC_199 EVQSISRGFVTN--SVALNYQMGLDSEREDGRHPGLTSELYSDAAGRSFY . MMAR_4422|M.marinum_M ----------------- Mflv_3082|M.gilvum_PYR-GCK ----------------- MSMEG_0657|M.smegmatis_MC2_155 ----------------- Mb3186c|M.bovis_AF2122/97 ----------------- Rv3161c|M.tuberculosis_H37Rv ----------------- TH_3877|M.thermoresistible__bu VGV-------------- MAV_5278|M.avium_104 GAGT------------- Mvan_4319|M.vanbaalenii_PYR-1 STSSVKESRD------- MUL_3820|M.ulcerans_Agy99 ----------------- MAB_4370c|M.abscessus_ATCC_199 ARWRDLMNTKAWHEEHV