For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VPVNAVVGYDGSPGASTAIEAGALLFPGARGWITYLWVPPFASEKVRRRLRPMASNTNELVEMVEREGEL EARRVVAMGATLARAAGWDAEPVLKRTWGPEGLRMAEEADEVQADLVLVGTRGLGGTQAVLGSVADMVLH RCPRPVVVVPNPMLAAEYDALPKGPMVVGWDGSAGSETALAAARRLCPDREVVLVFVGDGSVPPPAAGVG ELRQLSVERGRGFHARAVSEALVAAGQDNGAALLVVGSRGHSGARETLLGSVAMGTVHHSHRPVLVVPSG WQVPADS
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_0859 | - | - | 100% (287) | universal stress protein UspA |
| M. marinum M | MMAR_4922 | - | 8e-14 | 28.98% (314) | hypothetical protein MMAR_4922 |
| M. marinum M | MMAR_3477 | - | 2e-12 | 30.64% (235) | hypothetical protein MMAR_3477 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2028c | - | 2e-10 | 31.09% (238) | hypothetical protein Mb2028c |
| M. gilvum PYR-GCK | Mflv_5002 | - | 2e-73 | 50.00% (284) | UspA domain-containing protein |
| M. tuberculosis H37Rv | Rv2005c | - | 2e-10 | 31.09% (238) | hypothetical protein Rv2005c |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_2489 | - | 8e-09 | 32.28% (189) | hypothetical protein MAB_2489 |
| M. avium 104 | MAV_2507 | - | 3e-10 | 29.49% (295) | universal stress protein family protein |
| M. smegmatis MC2 155 | MSMEG_4362 | - | 2e-69 | 50.55% (275) | universal stress protein family protein |
| M. thermoresistible (build 8) | TH_3159 | - | 3e-16 | 36.24% (149) | PUTATIVE UspA domain protein |
| M. ulcerans Agy99 | MUL_0611 | - | 1e-146 | 94.55% (275) | hypothetical protein MUL_0611 |
| M. vanbaalenii PYR-1 | Mvan_1372 | - | 2e-81 | 54.77% (283) | UspA domain-containing protein |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_0859|M.marinum_M --------------MPVNAVVGYDGSPGASTAIEAGALLFPGARGWITYL
MUL_0611|M.ulcerans_Agy99 MAGLVARDLSRRCTVPVNAVVGYDGSPGASTAIEAGALLFPGARGWITYL
Mflv_5002|M.gilvum_PYR-GCK --------------MPANVMVGYDGSPAACAAINAGAALFPNAHAWIAHI
Mvan_1372|M.vanbaalenii_PYR-1 --------------MPTNLIVGYDGSPAANAAINAGAQLFPSAHAWIAHI
MSMEG_4362|M.smegmatis_MC2_155 ----------------MKIVVGYDGSLSANSAIRTSSELFPAAEAVIVYL
TH_3159|M.thermoresistible__bu ------------------MVIAYDGSRNARRAVQYAGHFFAGRRAVVLTV
Mb2028c|M.bovis_AF2122/97 ---------MSKPRKQHGVVVGVDGSLESDAAACWGATDAAMRNIPLTVV
Rv2005c|M.tuberculosis_H37Rv ---------MSKPRKQHGVVVGVDGSLESDAAACWGATDAAMRNIPLTVV
MAV_2507|M.avium_104 ---------MAASSKRCGVLVGVDGSPASNFAVCWAARDAAMRNVPLTLV
MAB_2489|M.abscessus_ATCC_1997 ---------MTTSTPNSHILVGVDGSTSALHALTWAGAEAQRRNLPLTLV
::. *** : * .. . : :
MMAR_0859|M.marinum_M WVPPFASEKVRRRLRPMASNTNELVEMVEREGELEARRVVAMGATLARAA
MUL_0611|M.ulcerans_Agy99 WVPPFASEKVRRRLRPMASNTNELVEMVEREGELEARRVVAMGATLARAA
Mflv_5002|M.gilvum_PYR-GCK WQPPFAGKRLRRRLRAAARTADELAELIEREGAREADTIASAGVALAKAA
Mvan_1372|M.vanbaalenii_PYR-1 WTPPFTSKRLRRRLRAAAESADDLAELIEREGAREADNIVGAGVALAKAA
MSMEG_4362|M.smegmatis_MC2_155 STPPFGSRGLRARLRHSARNVDELIDLVDRESEGESARLVDLGVTLARAA
TH_3159|M.thermoresistible__bu WTP---LERGPEPVQVDLDGPPDPPEPDEDIKLASARRVNNEGVELARTA
Mb2028c|M.bovis_AF2122/97 HVVNAD-VATWPPMPYPETWGVWQ-EDEGRQIVANAVKLAKEAVGADRKL
Rv2005c|M.tuberculosis_H37Rv HVVNAD-VATWPPMPYPETWGVWQ-EDEGRQIVANAVKLAKEAVGADRKL
MAV_2507|M.avium_104 HMVNA--ATVWPQVPMAAEAVAWQ-EDDGRRVLQEAVKIAEDATRNGRNL
MAB_2489|M.abscessus_ATCC_1997 HVIDHSSLGQGYNLGASASFFQHL-ETDGAEFLSQAK---DHVYALHPNV
: : .:
MMAR_0859|M.marinum_M GWDAEPVLKRTWGPEGLRMAEEADEVQADLVLVGTRGLGGTQAVLG-SVA
MUL_0611|M.ulcerans_Agy99 GWDAEPVLKRTWGPEGLRMAEEADEVQADLVLVGTRGLGGTQAVLG-SVA
Mflv_5002|M.gilvum_PYR-GCK EWDAEPVVKRTYGSDGMRLSQLAEQMHSDVLVLGDRGLDATDAVIG-SVS
Mvan_1372|M.vanbaalenii_PYR-1 EWDAEPVVKRTIGSDGLRLAQLAERLHTDVVVVGDRGLGRTEAVIG-SVS
MSMEG_4362|M.smegmatis_MC2_155 GWTAEPLVKRTWAGEGLGLAQVGEELQPDVMVVGARGIGASESKIG-SVS
TH_3159|M.thermoresistible__bu GLAAEPLCMPESGTVWNTIIETADELDADLIVTGTRGTTGLRSLLQSSVA
Mb2028c|M.bovis_AF2122/97 SVKSELVFSTPVP------TMVEISNEAEMVVLGSSGRGALARGLLGSVS
Rv2005c|M.tuberculosis_H37Rv SVKSELVFSTPVP------TMVEISNEAEMVVLGSSGRGALARGLLGSVS
MAV_2507|M.avium_104 AITTELWHAPPAP------TLAQLSEEAELVVVGSTGRGAIGRLLLGSVS
MAB_2489|M.abscessus_ATCC_1997 EVSTVKATGRPVP------VLVELSRNALMTVLGSSGLGGFTGMMAGSVS
: .. : : * * : **:
MMAR_0859|M.marinum_M DMVLHRCPRPVVVVPNPMLAAEYDALPKGPMVVGWDGSAGSETALAAARR
MUL_0611|M.ulcerans_Agy99 DMVLHRCPRPVVVVPNPMLAAEYDALPKGPMVVGWDGSAGSETALAAARR
Mflv_5002|M.gilvum_PYR-GCK DMAVHYSTVPVLVVPNPLLAEEFAALARGPIVVAFDGSPGADAAAEKART
Mvan_1372|M.vanbaalenii_PYR-1 DMVVHYSTVPVLVVPNPLLTEEYAALAHGPVVVGYDGSAAAEAATDTARR
MSMEG_4362|M.smegmatis_MC2_155 DLVVHHAPRPVLVVSQHMLSAEHQAVVDGPVVVGVDGSAGADRAIKAAEQ
TH_3159|M.thermoresistible__bu DNVLRRGRRPVLIVP------------PGPR-------------------
Mb2028c|M.bovis_AF2122/97 SSLVRRAGCPVAVIHSDDAVIPDPQH--APVLVGIDGSPVSELATAVAFD
Rv2005c|M.tuberculosis_H37Rv SSLVRRAGCPVAVIHSDDAVIPDPQH--APVLVGIDGSPVSELATAVAFD
MAV_2507|M.avium_104 SGLVRRARCPVAVIHDEDPMMPYPQR--APVLVGIDGSPASELATAIAFD
MAB_2489|M.abscessus_ATCC_1997 VSLTAKGHSPVVVVRES----PVPGG--GPVVVGIDDSESSDGAAAWAFE
** :: .*
MMAR_0859|M.marinum_M LCPDREVVLVFVGDGSVP--------------PPAAG----VGELRQLSV
MUL_0611|M.ulcerans_Agy99 LCPDREVVLVFVGDGSAP--------------PPAAG----VGELRQLSV
Mflv_5002|M.gilvum_PYR-GCK LFPDREVVLAGVRDEDDD--------------PAARQWPDDVEVLATSEP
Mvan_1372|M.vanbaalenii_PYR-1 LFPDRKVILAAVRDDDRD--------------VVAGPATEGLEMLTVDET
MSMEG_4362|M.smegmatis_MC2_155 LFPTRTVVSAAVDDGDAE--------------GVD----------ATHHV
TH_3159|M.thermoresistible__bu --------------------------------------------------
Mb2028c|M.bovis_AF2122/97 EASRRGVELIAVHAWSDV------EVVELPGLDFSAVQQEAELSLAERLA
Rv2005c|M.tuberculosis_H37Rv EASRRGVELIAVHAWSDV------EVVELPGLDFSAVQQEAELSLAERLA
MAV_2507|M.avium_104 EALRRGVDLNAVHAWSDT------QVFGLPGMDWPAVRSQAERSLAERLA
MAB_2489|M.abscessus_ATCC_1997 EAAMRETELVAVHVWNNIPPGYVYAYTAWSAMDSAGEQQRQEQLLAERLA
MMAR_0859|M.marinum_M ERGRGFHARAVSEALVAAG-------QDNGAALLVVGSRGHSGARETLLG
MUL_0611|M.ulcerans_Agy99 ERGRGFHARAVSEALVAAG-------QDNGAALLVVGSRGHSGARETLRA
Mflv_5002|M.gilvum_PYR-GCK NWLGRPRDRATADALIDFA-------DRRDAAVLVVGSRGRSAVREVLLG
Mvan_1372|M.vanbaalenii_PYR-1 NWFGRARDRAIADELIAVG-------DRSDAAVLVVGSRGRSPAREVLLG
MSMEG_4362|M.smegmatis_MC2_155 KRFRGSGAGATADALVAFA-------DEQRAAAIVVGSRGRSALKKVLLG
TH_3159|M.thermoresistible__bu --------------------------------------------------
Mb2028c|M.bovis_AF2122/97 GWQERYPDVPVSRVVVCDRPARKLVQKSASAQLVVVGSHGRGGLTGMLLG
Rv2005c|M.tuberculosis_H37Rv GWQERYPDVPVSRVVVCDRPARKLVQKSASAQLVVVGSHGRGGLTGMLLG
MAV_2507|M.avium_104 GWQERYPDVTVHRMVVCDRPARQLIEQSESAQLTVVGSHGRGGLAGTLLG
MAB_2489|M.abscessus_ATCC_1997 GWQEKYPDVPVRRVVAVGHPADVLLSQAAGAQLIVTGSRGRGDIAGFFLG
MMAR_0859|M.marinum_M SVAMGTVHHSHRPVL----------VVPSGWQVPADS-------------
MUL_0611|M.ulcerans_Agy99 RDIAWQRRNGHRAPLPSAGPGGAERVAGSRRLLSADGALGPRSARWVTSG
Mflv_5002|M.gilvum_PYR-GCK SVAVAAVNRSHRPVM----------VVHS---------------------
Mvan_1372|M.vanbaalenii_PYR-1 SVAVATVHRSHRPVL----------VVHS---------------------
MSMEG_4362|M.smegmatis_MC2_155 SVAGATLQRTFRPVL----------VVPGG--------------------
TH_3159|M.thermoresistible__bu --------------------------------------------------
Mb2028c|M.bovis_AF2122/97 SVSNAVLHAARVPVI----------VARQS--------------------
Rv2005c|M.tuberculosis_H37Rv SVSNAVLHAARVPVI----------VARQS--------------------
MAV_2507|M.avium_104 SVSNAVVHSVRMPVI----------VARPS--------------------
MAB_2489|M.abscessus_ATCC_1997 STSHALIHKASCPVL----------VAPRT--------------------
MMAR_0859|M.marinum_M ------
MUL_0611|M.ulcerans_Agy99 SDPAGV
Mflv_5002|M.gilvum_PYR-GCK ------
Mvan_1372|M.vanbaalenii_PYR-1 ------
MSMEG_4362|M.smegmatis_MC2_155 ------
TH_3159|M.thermoresistible__bu ------
Mb2028c|M.bovis_AF2122/97 ------
Rv2005c|M.tuberculosis_H37Rv ------
MAV_2507|M.avium_104 ------
MAB_2489|M.abscessus_ATCC_1997 ------