For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_4341 | - | - | 100% (412) | putative L-carnitine dehydratase/bile acid-inducible protein F |
| M. thermoresistible (build 8) | TH_4667 | - | 1e-96 | 47.38% (401) | PUTATIVE putative L-carnitine dehydratase/bile acid-inducible |
| M. thermoresistible (build 8) | TH_3557 | - | 8e-92 | 45.06% (395) | PUTATIVE putative L-carnitine dehydratase/bile acid-inducible |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3300 | - | 4e-41 | 31.79% (368) | hypothetical protein Mb3300 |
| M. gilvum PYR-GCK | Mflv_4341 | - | 4e-90 | 45.34% (408) | L-carnitine dehydratase/bile acid-inducible protein F |
| M. tuberculosis H37Rv | Rv3272 | - | 1e-41 | 31.52% (368) | hypothetical protein Rv3272 |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_4651c | - | 2e-36 | 31.02% (403) | putative L-carnitine dehydratase |
| M. marinum M | MMAR_4713 | - | 2e-87 | 43.17% (410) | dehydratase |
| M. avium 104 | MAV_2945 | - | 1e-93 | 45.73% (398) | L-carnitine dehydratase/bile acid-inducible protein F |
| M. smegmatis MC2 155 | MSMEG_4798 | - | 3e-85 | 43.87% (408) | L-carnitine dehydratase/bile acid-inducible protein F |
| M. ulcerans Agy99 | MUL_3873 | - | 1e-67 | 41.55% (349) | dehydratase |
| M. vanbaalenii PYR-1 | Mvan_4155 | - | 4e-85 | 43.95% (405) | L-carnitine dehydratase/bile acid-inducible protein F |
CLUSTAL 2.0.9 multiple sequence alignment
TH_4341|M.thermoresistible__bu MGDRAGRSVQVLEGIRVLELSGFAYVPSAGAILADWGADVIKVEHPAHGD
MAV_2945|M.avium_104 --------------MRVVELASWTYVPSAGAALADWGADVIKVEGVSSGD
Mflv_4341|M.gilvum_PYR-GCK -------MIKVMEGVRVLEVAQFTFVPAAGAILADWGADVIKIEHPVRGD
MUL_3873|M.ulcerans_Agy99 --------------------------------------------------
MSMEG_4798|M.smegmatis_MC2_155 -------MSGPLEGIRILEVAMYGFVPSAGAVLGEWGADVIKVEHAVTGD
Mvan_4155|M.vanbaalenii_PYR-1 -------MSKPLDGIRVLEVAMYGFVPSAGAVLAEWGADVIKVEHAVTGD
MMAR_4713|M.marinum_M --------MKPLEGIRVLEVAMYGFVPSAGAVLAEWGADVIKVEHAVTGD
Mb3300|M.bovis_AF2122/97 --MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAP-GGE
Rv3272|M.tuberculosis_H37Rv --MPTSNPAKPLDGFRVLDFTQNVAGPLAGQVLVDLGAEVIKVEAP-GGE
MAB_4651c|M.abscessus_ATCC_199 -------MTGALDGIRVLELGTLIAGPFAGRLLGDMGAEVLKIEPPGAPD
TH_4341|M.thermoresistible__bu PSRGITIGGIPPGTG--GFTFMWELANRGKRSVGIDVSTDDGRRLVLELA
MAV_2945|M.avium_104 PGRALVVSGFTREAARPDADFILELGNRGKRSIAIDIKSETGRELFGRLL
Mflv_4341|M.gilvum_PYR-GCK TQRGFINMGGFQLDP--NRHPLIEHPNRGKRSVGIDVSTPEGQEVLYEIA
MUL_3873|M.ulcerans_Agy99 --MAFSTWGGIALDP--ERHPLIEHPNRGKRSVGIDLATSDGQDVLHELA
MSMEG_4798|M.smegmatis_MC2_155 PQRGLRQTGPLRVDG--DPNPNIEHANRGKRSIGLDMSVPAGREVLLELA
Mvan_4155|M.vanbaalenii_PYR-1 PQRGLRQTGLLRVEG--DPNPNIEHANRLKRSIGLDMSVAEGREVLLELA
MMAR_4713|M.marinum_M PQRGLRQTGMLRVEG--DPNPNIEHANRGKRSLGLDMSISEGKEVLHELA
Mb3300|M.bovis_AF2122/97 AAR--QITSVLPGRP--PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLA
Rv3272|M.tuberculosis_H37Rv AAR--QITSVLPGRP--PLATYFLPNNRGKKSVTVDLTTEQAKQQMLRLA
MAB_4651c|M.abscessus_ATCC_199 PLRTWGQAEVDG------HHVFWTVHARNKKAITLDLRTEAGRALFLDLV
* *::: :*: .: . :
TH_4341|M.thermoresistible__bu KSADVFLTSYLPGVREKLRITEDDIRGVNPSIVYAVGSGQGHHGPENAAG
MAV_2945|M.avium_104 ASADVFLTNWLPGALERARLTVADIRAFNPRIIIARGTGLGVRGPDRDRG
Mflv_4341|M.gilvum_PYR-GCK KTADVFLTNYMPQARQKNKFDIEHIRAVNPNIIYARGSAYGDKGPERLVG
MUL_3873|M.ulcerans_Agy99 RSADVFLTNYLPSARQKNKFDVEHVRGANPDIIYARGTAYGDKGAERDVG
MSMEG_4798|M.smegmatis_MC2_155 RRADVFLTSFLPGHREKFGIDVDDIRAVNPKIIYARGSALGPRGEESVKG
Mvan_4155|M.vanbaalenii_PYR-1 RRADVFLTSFLPGHRQKFGIDVDDIRAANPKIVYARGSALGPRGEESVKG
MMAR_4713|M.marinum_M RRSDVFLTSFLPGARRKFGIDLEDIRAVNPSIIYARGSALGPRGEEAAKG
Mb3300|M.bovis_AF2122/97 DTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYARLTAYGGNGPHGSRP
Rv3272|M.tuberculosis_H37Rv DTADVVLEAFRPGTMEKLGLGPDDLRSRNPNLIYARLTAYGGNGPHGSRP
MAB_4651c|M.abscessus_ATCC_199 DKSDVIVENFRPGTLERWGLGYDVLAQRNKGIILVRVSGYGQTGPDAHKA
:**.: : * .: : : * :: . :. * * .
TH_4341|M.thermoresistible__bu GFDQTSFWYRTGMASALTEAGGHPPELPG-PGFGDLSSGVALAGGISAAL
MAV_2945|M.avium_104 GFDAATYLARGGVAYTLTPFGSETPAVQG-PGFGDLQAGATLAGGVCAAL
Mflv_4341|M.gilvum_PYR-GCK GFDGTAFWTRSGVGHALTPEELGGALPQGIPAFGDSIGGMNIAGGISAAL
MUL_3873|M.ulcerans_Agy99 GYDGTAFWTRSGVGHALTPPELGAPLAQGIPAFGDSIGGMNIAGGISAAL
MSMEG_4798|M.smegmatis_MC2_155 GYDMTAFWCRAGAAATITPPGIEGMIGPPGPAYGDTISGTNLAGGIAAAL
Mvan_4155|M.vanbaalenii_PYR-1 GYDMTAFWCRAGTAATITPPGTPGMVGPPGPAYGDTISGTNLAGGIAAAL
MMAR_4713|M.marinum_M GYDMTAFWCRAGTAATITPMGYQGMINPPGPAYGDTISGTNLAGGIAAAL
Mb3300|M.bovis_AF2122/97 GIDLVVAAEAGMTTGMPTPEGKPQIIPFQ---LVDNASGHVLAQAVLAAL
Rv3272|M.tuberculosis_H37Rv GIDLVVAAEAGMTTGMPTPEGKPQIIPFQ---LVDNASGHVLAQAVLAAL
MAB_4651c|M.abscessus_ATCC_199 GYASVAEAASGLRHLNGFPGGPPPRMALS---IGDTLAGMFAAQGALAAL
* . * .* * . ***
TH_4341|M.thermoresistible__bu LHRERTGAGVAVHGSLLATGMWMMQPSIVATEVTGE--PEFRWLDRFETT
MAV_2945|M.avium_104 FHRERTGEPTIVDSSLLAQAMWSIAPSISAADFFDI--DGIPGAPPGLAI
Mflv_4341|M.gilvum_PYR-GCK FHRERTGEAVEIDVSLLSTAWWAAGASVTQGMETGETMRSLMPGTT-TSV
MUL_3873|M.ulcerans_Agy99 LHRERTGEALEVDVSLLSTAWWAAGASMTQGMDTGETMRSRMPQSGGMPM
MSMEG_4798|M.smegmatis_MC2_155 FKRERTGEPSVVDVSLLGSGLWAMGHTIALTSHLNELMVQPPPGVHGSPI
Mvan_4155|M.vanbaalenii_PYR-1 LKRERTGEPSIVDVSLLGSGLWALGHTVALTNHLHERMEAFPPGAHGSPI
MMAR_4713|M.marinum_M LKRERTGEPSVVDVSLLGSGLWSLGHTVALTRHLGQRLEAPPPGIHGSPI
Mb3300|M.bovis_AF2122/97 LHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR
Rv3272|M.tuberculosis_H37Rv LHRERNGVADVVQVAMYDVAVGLQANQLMMHLNRAASDQPKPEPAPKAKR
MAB_4651c|M.abscessus_ATCC_199 YRRTVTGRGQVVDAALTESCLAVQESTIPDYDVGRVVRGPSGTRLEGIAP
:* .* :. :: :
TH_4341|M.thermoresistible__bu NP-------LVNSYRTADGRYIGLTVLHADKHWREFCEAIGHPELADDER
MAV_2945|M.avium_104 NP-------LVNRYRTKDRRWIQLVFLQPDKYWAGFCRRIGLAELADDAR
Mflv_4341|M.gilvum_PYR-GCK NP-------FMANYQTSDGGTINLCIVSPTGYIRDTWEHLGLPELADDPR
MUL_3873|M.ulcerans_Agy99 NP-------FMGNYQTSDGGTINLCILSPTGYIRDTFEHLGIPEAADDPR
MSMEG_4798|M.smegmatis_MC2_155 NP-------LVGLYGTADGRYISFVMMQPTKFWADVCRHMDLEHYIDDPR
Mvan_4155|M.vanbaalenii_PYR-1 NP-------LVGLYPTADDRYISFVMMQPTKFWADVCSHMDLDELVDDPR
MMAR_4713|M.marinum_M NP-------LVGVYATSDGRYISLVMMQPTKFWADVCRHIDRPDLAEDPR
Mb3300|M.bovis_AF2122/97 RKGVGFATQPSDAFRTADG-YIVISAYVP-KHWQKLCYLIGRPDLVEDQR
Rv3272|M.tuberculosis_H37Rv RKGVGFATQPSDAFRTADG-YIVISAYVP-KHWQKLCYLIGRPDLVEDQR
MAB_4651c|M.abscessus_ATCC_199 SN----------IYQSADGSWVVIAANQDTVFRR-LCEAMGRPELSSDAR
: : * : : . :. . .* *
TH_4341|M.thermoresistible__bu FADHDARAANSAACVKLLDEIFATRTLEHWKAVLSAQGAQWAVIQQCAET
MAV_2945|M.avium_104 FVPSSNLIANAAAATELLANTFARHDLSHWQTVLADEPGVWGALATPRET
Mflv_4341|M.gilvum_PYR-GCK FSDVMPLIQNAEEGVRLITEAIAAKPFEYWRRHLKTMKGQWAPFQSLVDL
MUL_3873|M.ulcerans_Agy99 FGEAEQLLRNADAAGALIARAVAARPFEYWRQRLKTMKGQWAPFQSLIEL
MSMEG_4798|M.smegmatis_MC2_155 FATAESIAENTAAAVDILTEAMKKRTLPEWSERFATLAGPWAPVQDTLQA
Mvan_4155|M.vanbaalenii_PYR-1 FATAESIAENTADAAEILKEAMSKRTLAEWSERFATLAGPWAPVQDTLQA
MMAR_4713|M.marinum_M FATVEKIAAHTADAVEILTKAISARTLAEWSERFATLAGPWAPVQDTLQA
Mb3300|M.bovis_AF2122/97 FAEQRSRSINYAELTAELELALASKTATEWVQLLQANGLMACLAHTWKQV
Rv3272|M.tuberculosis_H37Rv FAEQRSRSINYAELTAELELALASKTATEWVQLLQANGLMACLAHTWKQV
MAB_4651c|M.abscessus_ATCC_199 FANHVARGRNQDDLDAIIAQWAAQRLPTDIIDVLSAAGVIAGPINTVADV
* : : : : :
TH_4341|M.thermoresistible__bu RSDPQVVANGYLQAVDYG-GGRSISLVPAPVQYGDGP---PRLRPAPELG
MAV_2945|M.avium_104 LNDPQVEPNGYVVTNVDD-HGEKYRIVAAPVQFDETP---PAPARAPEHG
Mflv_4341|M.gilvum_PYR-GCK GTDEQAIANDMIVEVEASDGGKPFKVVRGPVQFNHEP---LETTRAPQAS
MUL_3873|M.ulcerans_Agy99 ADDEQALANDMVAEVDLGAGGPPFRVVRGPVQFNHEP---LTTTRAPQPG
MSMEG_4798|M.smegmatis_MC2_155 AQDAQIRANEYLVQAG------ELELVTNPVQFDVSA---PSPGPAPGFA
Mvan_4155|M.vanbaalenii_PYR-1 AEDAQVRANEYLVQAG------ELELVANPVQFDVAA---PASGPAPGFA
MMAR_4713|M.marinum_M ADDAQVRANEYVVRAG------ELELVANPVQFDVAA---PQTGPAPGFA
Mb3300|M.bovis_AF2122/97 VDTPLFAESDLTLEVGRG--ADTITVIRTPARYASFR---AVVTDPPPTA
Rv3272|M.tuberculosis_H37Rv VDTPLFAENDLTLEVGRG--ADTITVIRTPARYASFR---AVVTDPPPTA
MAB_4651c|M.abscessus_ATCC_199 VQDPQLKAREMLVEHFDERLGRSVLGPGVVPVLSESPGGVRNAGPARPGQ
.
TH_4341|M.thermoresistible__bu ANTEEVLLDNGLEWEEIERLKDQRVIT
MAV_2945|M.avium_104 QHTEEILLELDVDWDDIAKAKALKAIL
Mflv_4341|M.gilvum_PYR-GCK EHTEIVLMELGLEWDRIEELKDKGAIA
MUL_3873|M.ulcerans_Agy99 EHTETVLLELGMDWDRIDQLKRSGAIS
MSMEG_4798|M.smegmatis_MC2_155 EQTDDILAELGLDWDRIIELKTAGAVT
Mvan_4155|M.vanbaalenii_PYR-1 EQTDDILVELGLDWDRIIELKTAGAVT
MMAR_4713|M.marinum_M EQTDDILLELGFDWDRIIELKTAGAVT
Mb3300|M.bovis_AF2122/97 GEHNAVFLARP----------------
Rv3272|M.tuberculosis_H37Rv GEHNAVFLARP----------------
MAB_4651c|M.abscessus_ATCC_199 DNDDVYVGLLGKSAQDIERLRAEGVL-
. : .