For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_3332 | - | - | 100% (272) | protein of unknown function DUF140 |
| M. thermoresistible (build 8) | TH_0168 | - | e-104 | 66.67% (273) | TrnB2 protein |
| M. thermoresistible (build 8) | TH_4199 | - | e-102 | 66.41% (262) | PUTATIVE protein of unknown function DUF140 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3530c | yrbE4B | 1e-86 | 58.75% (257) | integral membrane protein YrbE4b |
| M. gilvum PYR-GCK | Mflv_2100 | - | 3e-99 | 63.30% (267) | hypothetical protein Mflv_2100 |
| M. tuberculosis H37Rv | Rv1965 | yrbE3B | 3e-93 | 63.36% (262) | integral membrane protein YrbE3b |
| M. leprae Br4923 | MLBr_02588 | yrbE1B | 5e-72 | 49.61% (254) | hypothetical protein MLBr_02588 |
| M. abscessus ATCC 19977 | MAB_4154c | - | 4e-84 | 55.35% (271) | hypothetical protein MAB_4154c |
| M. marinum M | MMAR_4050 | yrbE3B_1 | 2e-95 | 60.84% (263) | integral membrane protein YrbE3B_1 |
| M. avium 104 | MAV_2060 | - | 3e-93 | 59.77% (266) | TrnB2 protein |
| M. smegmatis MC2 155 | MSMEG_0345 | - | 2e-99 | 63.91% (266) | hypothetical protein MSMEG_0345 |
| M. ulcerans Agy99 | MUL_3917 | yrbE3B_1 | 1e-95 | 60.84% (263) | integral membrane protein YrbE3B_1 |
| M. vanbaalenii PYR-1 | Mvan_0921 | - | 6e-99 | 66.16% (263) | hypothetical protein Mvan_0921 |
CLUSTAL 2.0.9 multiple sequence alignment
Mb3530c|M.bovis_AF2122/97 ---MS------YDVTIRFRRFFSRLQRPVDNFGEQALFYGETMRYVPNAI
MAB_4154c|M.abscessus_ATCC_199 ---MSGPYLSTHTVTSYTVRYMRGLGRSFDKFGEQALFYAQSLSYIPAAL
TH_3332|M.thermoresistible__bu ------------------VKIRRRARSSWRRIGEQTRFYGTTIVSLFDAC
Rv1965|M.tuberculosis_H37Rv ------------------MTAAKALVSEWNRMGSQMRFFVGTLAGIPDAL
MMAR_4050|M.marinum_M ---MT--AVAAGSRWRGVRHKLDGWVAGWNQIGTQTKFFGRTLRSIHYML
MUL_3917|M.ulcerans_Agy99 ---MT--AVAAGSRWRGVRHKLDGWVAGWNQIGTQTKFFGRTLRSIHYML
Mflv_2100|M.gilvum_PYR-GCK ---MT--VSRPHSQFPWLKARFRSIADPWNQVGVQTKFYGRTLRSIVIAV
MSMEG_0345|M.smegmatis_MC2_155 -----------------MSNRLDRVRAAWDGIGVQTQFYARAIGSIGDAA
Mvan_0921|M.vanbaalenii_PYR-1 ---MT--SSAPSTRAPRLRRTVVGLAAGWNRIGTQTEFYGRTVRSIGDAV
MAV_2060|M.avium_104 ---MT--EIAREP--SRFAALGPRLVESTRKLGEQTVFYGQSLTAIADAI
MLBr_02588|M.leprae_Br4923 MSTAAVLRARFPRAAANLNRYGGAAARGIDDIGQMSWFGLIALGNIPNAL
.* * :: :
Mb3530c|M.bovis_AF2122/97 TRYRKETVRLVAEMTLGAGALVMIGGTVGVAAFLTLASGGVIAVQGYSSL
MAB_4154c|M.abscessus_ATCC_199 TKYRKETIRVLAEITMGTGALVMIGGTVGVAVFLTLASGGVIAVQGYSSL
TH_3332|M.thermoresistible__bu VYYRAELLRQVAAMSLGTGALAAIGGTVAVVAFLTMSTGGLIAAQGYNQF
Rv1965|M.tuberculosis_H37Rv MHYRGELLRVIAQMGLGTGVLAVIGGTVAIVGFLAMTTGAIVAVQGYNQF
MMAR_4050|M.marinum_M IHYRVELIRLIAQMGLGAGALMVIGGTVAIVGFLTVTTGALVAVQGYSDF
MUL_3917|M.ulcerans_Agy99 IHYRVELIRLIAQMGLGAGALMVIGGTVAIVGFLTVTTGALVAVQGYSDF
Mflv_2100|M.gilvum_PYR-GCK TRYRIELVRQIAQMGLGAGALIVIGGTVAIVGFLTVTTGALVAVQGYTDF
MSMEG_0345|M.smegmatis_MC2_155 MNYRTELIRLIATMGLGAGALAVVGGTVAIVGFLTMTTGALVAVQGYNQF
Mvan_0921|M.vanbaalenii_PYR-1 VHYRTEIAVQIAQMSLGTGALAVVGGTIVIVGFLTMSAGALIAVQGYNTL
MAV_2060|M.avium_104 RRYPGELLRLIAEMGMGTGALAVIGGTVGIIGFLTLTTGALVAVQGYDTL
MLBr_02588|M.leprae_Br4923 SRYRKETLRLIAQIGMGTGAMAVVGGTAAIVGFVTLSGSSLVAIQGFASL
* * :* : :*:*.: :*** : *:::: ..::* **: :
Mb3530c|M.bovis_AF2122/97 GDIGIEALTGFLSAFLNVRVVAPVIAGIALAATIGAGATAQLGAMRVSEE
MAB_4154c|M.abscessus_ATCC_199 GNIGIEALTGFLSAFLNVRIVAPVVAGIAMAATIGAGTTAQLGAMRVAEE
TH_3332|M.thermoresistible__bu SQVGVDALVGFASAFLNTRLITPTTAAIALAATIGAGATAQLGAMRVNEE
Rv1965|M.tuberculosis_H37Rv ASVGVEALTGFASAFFNTREIQPGTVMVALAATVGAGTTAALGAMRINEE
MMAR_4050|M.marinum_M SELGVEALTGFASAFFNVRLIAPATTAIALSATIGAGATAQLGAMRINDE
MUL_3917|M.ulcerans_Agy99 SELGVEALTGFASAFFNVRLIAPATTAIALSATIGAGATAQLGAMRINDE
Mflv_2100|M.gilvum_PYR-GCK SEIGVEALTGFASAFFNVRLIAPATTAVALAATIGAGATAQLGAMRINEE
MSMEG_0345|M.smegmatis_MC2_155 ASVGVEALTGFASAFFNVRLIAPGTTAVALSATIGAGATAQLGAMRINEE
Mvan_0921|M.vanbaalenii_PYR-1 AGVGVEALTGFASAYLNVRIIGPLTTGIGLAATIGAGATAQLGAMRIAEE
MAV_2060|M.avium_104 SNIGVEALTGFLSAFLNVRMIAPCTAGLALAATIGAGATAQLGAMRINEE
MLBr_02588|M.leprae_Br4923 GAIGVEAFTGFFAALINVRIAAPVITGIVMAATVGAGATAELGAMRISEE
. :*::*:.** :* :*.* * . : ::**:***:** *****: :*
Mb3530c|M.bovis_AF2122/97 IDAVECMAVHSVSYLVSTRLIAGLVAIIPLYSLSVLAAFFAARFTTVFVN
MAB_4154c|M.abscessus_ATCC_199 IDALETMAVHAISYLVSTRLVAGLIAIIPLYSLSVLAAFFASRATTVMIN
TH_3332|M.thermoresistible__bu IDALEVMGVRSIAYLASTRLVAGVVVVLPLYSVALILAYFAARFGTTAIY
Rv1965|M.tuberculosis_H37Rv IDALEVIGIRSISYLASTRVLAGVVVAVPLFCVGLMTAYLAARVGTTAIY
MMAR_4050|M.marinum_M IDALEVMGIRTIAFLAASRVVAGLLVVIPLYCVGVLASFWAARFGTTVLY
MUL_3917|M.ulcerans_Agy99 IDALEVMGIRTIAFLAASRVVAGLLVVIPLYCVGVLASFWAARFGTTVLY
Mflv_2100|M.gilvum_PYR-GCK IDALEVMGIRSVAYLASTRVLAGLLVVIPLYCVGVLASFWAARFGTTVIY
MSMEG_0345|M.smegmatis_MC2_155 IDALEVIGIRSVSYLASTRVAAGVIVVIPLYCVAVIMSFISSRLGTTVIY
Mvan_0921|M.vanbaalenii_PYR-1 IDALEVMGVRSIAYLASTRLLAGMIVVIPLYCVAVLMSFVAARVGTTAIY
MAV_2060|M.avium_104 IDALEVMGIRAVTYLASTRIIAGILVVIPLYAVAVLMSFIAAKLLTIYVY
MLBr_02588|M.leprae_Br4923 IDALEVMSIKSISFLVTTRILAGLVVIVPLYAVAMIMAFLSPHIITTVLY
***:* :.::::::*.::*: **::. :**:.:.:: :: :.: * :
Mb3530c|M.bovis_AF2122/97 GQSAGLYDHYFNTFLIPSDLLWSFMQAIAMSIAVMLVHTYYGYNASGGSV
MAB_4154c|M.abscessus_ATCC_199 GQSPGVYDHYFNTFLVPTDLLWSFLQAIVMSVVVMLVHTSYGFNASGGPV
TH_3332|M.thermoresistible__bu GQSSGVYNHYFNTFLVPADVIRSFTVTTVAAATVMLIHTYYGYTASGGPA
Rv1965|M.tuberculosis_H37Rv GQGSGVYDHYFNTFLRPTDVLWSSVEVVVVALMIMLVCTYYGYAAHGGPA
MMAR_4050|M.marinum_M SQATGVYDHYFRTFLNPTDLVWSFVQCIALSLVIMLVHTYYGYTARGGPA
MUL_3917|M.ulcerans_Agy99 SQATGVYDHYFRTFLNPTDLVWSFVQCIALSLVIMLVHTYYGYTARGGPA
Mflv_2100|M.gilvum_PYR-GCK GQSTGVYDHYFRTFLNPTDLVWSFAQCIVLAIVIMLVHTYYGFSARGGPA
MSMEG_0345|M.smegmatis_MC2_155 GQGSGVYDHYFNTFLNTNDLLWSFGQSVAITVVIMLVHTYYGYTASGGPA
Mvan_0921|M.vanbaalenii_PYR-1 GQSTGVYDHYFTTFLNPLDLVWSFVQAIAMAVTVMVIHTYYGFNASGGPA
MAV_2060|M.avium_104 GQSKGVYEHYFSTFLRPNDLLWSFFSALAMATGVMVVHTYYGFTATGGPA
MLBr_02588|M.leprae_Br4923 GQSNGTYEHYFRTFLRPDDVFWSFLEAVIITAVVMITHCYYGYTANGGPV
.*. * *:*** *** . *:. * : :*: **: * **..
Mb3530c|M.bovis_AF2122/97 GVGVAVGQAVRTSLIVVVVITLFISLAVYGASGNFNLSG
MAB_4154c|M.abscessus_ATCC_199 GVGVAVGQAVRTSLIVVVLVTLFISLAVYGGSGNFNLSG
TH_3332|M.thermoresistible__bu GVGEAVGRATRTSLVATALLILFVSLAIYGQTGQFNFSG
Rv1965|M.tuberculosis_H37Rv GVGEAVGRAVRASMVVASIAILVMTLAIYGQSPNFHLAT
MMAR_4050|M.marinum_M GVGEAVGRAVRTSLIFSAFVLVMISLAVYGQSGNFNLAG
MUL_3917|M.ulcerans_Agy99 GVGEAVGRAVRTSLIFSAFVLVMISLAVYGQSGNFNLAG
Mflv_2100|M.gilvum_PYR-GCK GVGEAVGRAVRTSLILSAFVLVMISLAVYGQSGNFNLAG
MSMEG_0345|M.smegmatis_MC2_155 GVGEAVGRAVRTSLIVAAIVVVMISLALYGQSGNFHLAG
Mvan_0921|M.vanbaalenii_PYR-1 GVGEAVGRAVRASLIVVVFVTLVISLSVYGQSGNFNLSG
MAV_2060|M.avium_104 GVGEAVGRSVRSSMIVTAFVCLMISLSVYGQSGNFNLSG
MLBr_02588|M.leprae_Br4923 GVGEAVGRSMRFSLVSVQVVVLSATLALYGVDPNFALTV
*** ***:: * *:: . : :*::** :* ::