For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_0168 | - | - | 100% (276) | TrnB2 protein |
| M. thermoresistible (build 8) | TH_4563 | - | e-117 | 79.46% (258) | PUTATIVE protein of unknown function DUF140 |
| M. thermoresistible (build 8) | TH_4199 | - | e-110 | 67.64% (275) | PUTATIVE protein of unknown function DUF140 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3530c | yrbE4B | 3e-99 | 61.54% (273) | integral membrane protein YrbE4b |
| M. gilvum PYR-GCK | Mflv_2100 | - | 1e-111 | 71.17% (274) | hypothetical protein Mflv_2100 |
| M. tuberculosis H37Rv | Rv3500c | yrbE4B | 3e-99 | 61.54% (273) | integral membrane protein YrbE4b |
| M. leprae Br4923 | MLBr_02588 | yrbE1B | 3e-81 | 54.47% (257) | hypothetical protein MLBr_02588 |
| M. abscessus ATCC 19977 | MAB_4154c | - | 8e-94 | 59.54% (262) | hypothetical protein MAB_4154c |
| M. marinum M | MMAR_4050 | yrbE3B_1 | 1e-108 | 68.01% (272) | integral membrane protein YrbE3B_1 |
| M. avium 104 | MAV_2060 | - | 1e-106 | 66.67% (273) | TrnB2 protein |
| M. smegmatis MC2 155 | MSMEG_0345 | - | 1e-110 | 71.16% (267) | hypothetical protein MSMEG_0345 |
| M. ulcerans Agy99 | MUL_3917 | yrbE3B_1 | 1e-108 | 68.01% (272) | integral membrane protein YrbE3B_1 |
| M. vanbaalenii PYR-1 | Mvan_0921 | - | 1e-116 | 72.99% (274) | hypothetical protein Mvan_0921 |
CLUSTAL 2.0.9 multiple sequence alignment
Mb3530c|M.bovis_AF2122/97 MS------YDVTIRFRRFFSR----LQRPVDNFGEQALFYGETMRYVPNA
Rv3500c|M.tuberculosis_H37Rv MS------YDVTIRFRRFFSR----LQRPVDNFGEQALFYGETMRYVPNA
MAB_4154c|M.abscessus_ATCC_199 MSGPYLSTHTVTSYTVRYMRG----LGRSFDKFGEQALFYAQSLSYIPAA
TH_0168|M.thermoresistible__bu -----------MPRIRRTADK----VLDSLARLGDQAQFYGRTFGSIGEA
Mvan_0921|M.vanbaalenii_PYR-1 MT--SSAPSTRAPRLRRTVVG----LAAGWNRIGTQTEFYGRTVRSIGDA
MMAR_4050|M.marinum_M MT--AVAAGSRWRGVRHKLDG----WVAGWNQIGTQTKFFGRTLRSIHYM
MUL_3917|M.ulcerans_Agy99 MT--AVAAGSRWRGVRHKLDG----WVAGWNQIGTQTKFFGRTLRSIHYM
Mflv_2100|M.gilvum_PYR-GCK MT--VSRPHSQFPWLKARFRS----IADPWNQVGVQTKFYGRTLRSIVIA
MSMEG_0345|M.smegmatis_MC2_155 --------------MSNRLDR----VRAAWDGIGVQTQFYARAIGSIGDA
MAV_2060|M.avium_104 MT--EIAREP--SRFAALGPR----LVESTRKLGEQTVFYGQSLTAIADA
MLBr_02588|M.leprae_Br4923 MS-TAAVLRARFPRAAANLNRYGGAAARGIDDIGQMSWFGLIALGNIPNA
.* : * :. :
Mb3530c|M.bovis_AF2122/97 ITRYRKETVRLVAEMTLGAGALVMIGGTVGVAAFLTLASGGVIAVQGYSS
Rv3500c|M.tuberculosis_H37Rv ITRYRKETVRLVAEMTLGAGALVMIGGTVGVAAFLTLASGGVIAVQGYSS
MAB_4154c|M.abscessus_ATCC_199 LTKYRKETIRVLAEITMGTGALVMIGGTVGVAVFLTLASGGVIAVQGYSS
TH_0168|M.thermoresistible__bu FVHYKVEVVRLIAQMSLGVGALAVIGGTIVIVAFLTLSTGALVAVQGYNQ
Mvan_0921|M.vanbaalenii_PYR-1 VVHYRTEIAVQIAQMSLGTGALAVVGGTIVIVGFLTMSAGALIAVQGYNT
MMAR_4050|M.marinum_M LIHYRVELIRLIAQMGLGAGALMVIGGTVAIVGFLTVTTGALVAVQGYSD
MUL_3917|M.ulcerans_Agy99 LIHYRVELIRLIAQMGLGAGALMVIGGTVAIVGFLTVTTGALVAVQGYSD
Mflv_2100|M.gilvum_PYR-GCK VTRYRIELVRQIAQMGLGAGALIVIGGTVAIVGFLTVTTGALVAVQGYTD
MSMEG_0345|M.smegmatis_MC2_155 AMNYRTELIRLIATMGLGAGALAVVGGTVAIVGFLTMTTGALVAVQGYNQ
MAV_2060|M.avium_104 IRRYPGELLRLIAEMGMGTGALAVIGGTVGIIGFLTLTTGALVAVQGYDT
MLBr_02588|M.leprae_Br4923 LSRYRKETLRLIAQIGMGTGAMAVVGGTAAIVGFVTLSGSSLVAIQGFAS
.* * :* : :*.**: ::*** : *:*:: ..::*:**:
Mb3530c|M.bovis_AF2122/97 LGDIGIEALTGFLSAFLNVRVVAPVIAGIALAATIGAGATAQLGAMRVSE
Rv3500c|M.tuberculosis_H37Rv LGDIGIEALTGFLSAFLNVRVVAPVIAGIALAATIGAGATAQLGAMRVSE
MAB_4154c|M.abscessus_ATCC_199 LGNIGIEALTGFLSAFLNVRIVAPVVAGIAMAATIGAGTTAQLGAMRVAE
TH_0168|M.thermoresistible__bu FADIGVEALTGFASAYFNVRLIAPITAGIALAATIGAGATAQLGAMRINE
Mvan_0921|M.vanbaalenii_PYR-1 LAGVGVEALTGFASAYLNVRIIGPLTTGIGLAATIGAGATAQLGAMRIAE
MMAR_4050|M.marinum_M FSELGVEALTGFASAFFNVRLIAPATTAIALSATIGAGATAQLGAMRIND
MUL_3917|M.ulcerans_Agy99 FSELGVEALTGFASAFFNVRLIAPATTAIALSATIGAGATAQLGAMRIND
Mflv_2100|M.gilvum_PYR-GCK FSEIGVEALTGFASAFFNVRLIAPATTAVALAATIGAGATAQLGAMRINE
MSMEG_0345|M.smegmatis_MC2_155 FASVGVEALTGFASAFFNVRLIAPGTTAVALSATIGAGATAQLGAMRINE
MAV_2060|M.avium_104 LSNIGVEALTGFLSAFLNVRMIAPCTAGLALAATIGAGATAQLGAMRINE
MLBr_02588|M.leprae_Br4923 LGAIGVEAFTGFFAALINVRIAAPVITGIVMAATVGAGATAELGAMRISE
:. :*:**:*** :* :***: .* :.: ::**:***:**:*****: :
Mb3530c|M.bovis_AF2122/97 EIDAVECMAVHSVSYLVSTRLIAGLVAIIPLYSLSVLAAFFAARFTTVFV
Rv3500c|M.tuberculosis_H37Rv EIDAVECMAVHSVSYLVSTRLIAGLVAIIPLYSLSVLAAFFAARFTTVFV
MAB_4154c|M.abscessus_ATCC_199 EIDALETMAVHAISYLVSTRLVAGLIAIIPLYSLSVLAAFFASRATTVMI
TH_0168|M.thermoresistible__bu EIDALEVMGIRSLTYLASTRLIAGVIVVIPLYCVAILMSFLAARFGTTFV
Mvan_0921|M.vanbaalenii_PYR-1 EIDALEVMGVRSIAYLASTRLLAGMIVVIPLYCVAVLMSFVAARVGTTAI
MMAR_4050|M.marinum_M EIDALEVMGIRTIAFLAASRVVAGLLVVIPLYCVGVLASFWAARFGTTVL
MUL_3917|M.ulcerans_Agy99 EIDALEVMGIRTIAFLAASRVVAGLLVVIPLYCVGVLASFWAARFGTTVL
Mflv_2100|M.gilvum_PYR-GCK EIDALEVMGIRSVAYLASTRVLAGLLVVIPLYCVGVLASFWAARFGTTVI
MSMEG_0345|M.smegmatis_MC2_155 EIDALEVIGIRSVSYLASTRVAAGVIVVIPLYCVAVIMSFISSRLGTTVI
MAV_2060|M.avium_104 EIDALEVMGIRAVTYLASTRIIAGILVVIPLYAVAVLMSFIAAKLLTIYV
MLBr_02588|M.leprae_Br4923 EIDALEVMSIKSISFLVTTRILAGLVVIVPLYAVAMIMAFLSPHIITTVL
****:* :.::::::*.::*: **::.::***.:.:: :* :.: * :
Mb3530c|M.bovis_AF2122/97 NGQSAGLYDHYFNTFLIPSDLLWSFMQAIAMSIAVMLVHTYYGYNASGGS
Rv3500c|M.tuberculosis_H37Rv NGQSAGLYDHYFNTFLIPSDLLWSFMQAIAMSIAVMLVHTYYGYNASGGS
MAB_4154c|M.abscessus_ATCC_199 NGQSPGVYDHYFNTFLVPTDLLWSFLQAIVMSVVVMLVHTSYGFNASGGP
TH_0168|M.thermoresistible__bu YGQSTGVYDHYFNTFLRPTDVIWSFFQAVVMAIVIMIVHTYYGYNASGGP
Mvan_0921|M.vanbaalenii_PYR-1 YGQSTGVYDHYFTTFLNPLDLVWSFVQAIAMAVTVMVIHTYYGFNASGGP
MMAR_4050|M.marinum_M YSQATGVYDHYFRTFLNPTDLVWSFVQCIALSLVIMLVHTYYGYTARGGP
MUL_3917|M.ulcerans_Agy99 YSQATGVYDHYFRTFLNPTDLVWSFVQCIALSLVIMLVHTYYGYTARGGP
Mflv_2100|M.gilvum_PYR-GCK YGQSTGVYDHYFRTFLNPTDLVWSFAQCIVLAIVIMLVHTYYGFSARGGP
MSMEG_0345|M.smegmatis_MC2_155 YGQGSGVYDHYFNTFLNTNDLLWSFGQSVAITVVIMLVHTYYGYTASGGP
MAV_2060|M.avium_104 YGQSKGVYEHYFSTFLRPNDLLWSFFSALAMATGVMVVHTYYGFTATGGP
MLBr_02588|M.leprae_Br4923 YGQSNGTYEHYFRTFLRPDDVFWSFLEAVIITAVVMITHCYYGYTANGGP
.*. * *:*** *** . *:.*** ..: :: :*: * **:.* **.
Mb3530c|M.bovis_AF2122/97 VGVGVAVGQAVRTSLIVVVVITLFISLAVYGASGNFNLSG
Rv3500c|M.tuberculosis_H37Rv VGVGVAVGQAVRTSLIVVVVITLFISLAVYGASGNFNLSG
MAB_4154c|M.abscessus_ATCC_199 VGVGVAVGQAVRTSLIVVVLVTLFISLAVYGGSGNFNLSG
TH_0168|M.thermoresistible__bu AGVGESVGRAVRTSLIATVFVTVFVSLAIYGQSGNFNLSG
Mvan_0921|M.vanbaalenii_PYR-1 AGVGEAVGRAVRASLIVVVFVTLVISLSVYGQSGNFNLSG
MMAR_4050|M.marinum_M AGVGEAVGRAVRTSLIFSAFVLVMISLAVYGQSGNFNLAG
MUL_3917|M.ulcerans_Agy99 AGVGEAVGRAVRTSLIFSAFVLVMISLAVYGQSGNFNLAG
Mflv_2100|M.gilvum_PYR-GCK AGVGEAVGRAVRTSLILSAFVLVMISLAVYGQSGNFNLAG
MSMEG_0345|M.smegmatis_MC2_155 AGVGEAVGRAVRTSLIVAAIVVVMISLALYGQSGNFHLAG
MAV_2060|M.avium_104 AGVGEAVGRSVRSSMIVTAFVCLMISLSVYGQSGNFNLSG
MLBr_02588|M.leprae_Br4923 VGVGEAVGRSMRFSLVSVQVVVLSATLALYGVDPNFALTV
.*** :**:::* *:: .: : :*::** . ** *: