For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
GWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWSNYREVFALMPF WRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVD TPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVNVW NDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. tuberculosis H37Rv | Rv2039c | - | - | 100% (280) | Probable sugar-transport integral membrane protein ABC transporter |
M. tuberculosis H37Rv | Rv2317 | uspB | 2e-47 | 37.69% (268) | sugar-transport integral membrane protein ABC transporter |
M. tuberculosis H37Rv | Rv2834c | ugpE | 4e-39 | 32.10% (271) | sn-glycerol-3-phosphate transport integral membrane protein |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2065c | - | 1e-165 | 99.64% (280) | sugar-transport integral membrane protein ABC transporter |
M. gilvum PYR-GCK | Mflv_3853 | - | 1e-33 | 30.83% (266) | binding-protein-dependent transport systems inner membrane |
M. leprae Br4923 | MLBr_01425 | - | 1e-136 | 79.15% (283) | putative ABC-transport protein, inner membrane component |
M. abscessus ATCC 19977 | MAB_1716c | - | 1e-52 | 40.82% (267) | sugar ABC transporter, permease protein |
M. marinum M | MMAR_3012 | - | 1e-144 | 85.36% (280) | sugar ABC transporter |
M. avium 104 | MAV_2478 | - | 1e-138 | 80.71% (280) | sugar ABC transporter, permease |
M. smegmatis MC2 155 | MSMEG_0517 | - | 2e-56 | 40.74% (270) | sugar binding-protein dependent transporter system permease |
M. thermoresistible (build 8) | TH_2867 | - | 3e-28 | 28.68% (258) | PUTATIVE binding-protein-dependent transport systems inner |
M. ulcerans Agy99 | MUL_2253 | - | 1e-143 | 84.29% (280) | sugar ABC transporter |
M. vanbaalenii PYR-1 | Mvan_2542 | - | 3e-33 | 30.08% (266) | binding-protein-dependent transport systems inner membrane |
CLUSTAL 2.0.9 multiple sequence alignment Rv2039c|M.tuberculosis_H37Rv MGWADR------------------IVHRHFIRG--LALYAGLIGIAWCAL Mb2065c|M.bovis_AF2122/97 MGWADR------------------IVHRHFIRG--LALYAGLIGIAWCAL MMAR_3012|M.marinum_M MGSADR------------------VVQRKIVRA--VALYAALIAIAWCAL MUL_2253|M.ulcerans_Agy99 MGSADR------------------VVQRNIVRA--VALYAALIAIAWCAM MLBr_01425|M.leprae_Br4923 MGLAERLNH---------------IVKRSVLRA--VVVYIALTGIAWCAL MAV_2478|M.avium_104 MGSSEA------------------VIKRTVLRA--ATVYAALLGIAWCAL MSMEG_0517|M.smegmatis_MC2_155 MTTTPHITAPVAESTEPTVVEDFSPRRRTRLRLPFSPWHLVLIPVTFLLI MAB_1716c|M.abscessus_ATCC_199 MTWSRN-----------------------------VLVYLLLTVGAVLTL Mflv_3853|M.gilvum_PYR-GCK ------------------------------MTKNTKWWTIAGIVIVIYSF Mvan_2542|M.vanbaalenii_PYR-1 ------------------------------MTKNTKWWTIAGIVIVIYSF TH_2867|M.thermoresistible__bu -------------------------VNERVTARRATGWIVIDLLVILYAL : Rv2039c|M.tuberculosis_H37Rv FPIIWALSGSLKADGEVT--EPTLFPSHPQWSNYREVFALM----PFWRM Mb2065c|M.bovis_AF2122/97 FPIIWALSGSLKADGEVT--EPTLFPSHPQWSNYREVFALM----PFWRM MMAR_3012|M.marinum_M FPILWALSGSLKKSGEVS--EPRLLPSDPQWSNYAEVFTLM----PFWRM MUL_2253|M.ulcerans_Agy99 FPILWALSGSLKKGGEVS--EPRLLPSDPQWSNYAEVFTLM----PFWRM MLBr_01425|M.leprae_Br4923 FPIVWALSGSLKKEGEIR--EPTLLPAHPQWSNYTEVFDLI----PFWRM MAV_2478|M.avium_104 FPIAWAVSGSLKTEGEVS--EPTLVPARPRWSNYTEVFALM----PIGRM MSMEG_0517|M.smegmatis_MC2_155 LPLLWMLVTSLQTEGEANRFPPVLLPESPRFENYTEAWATA----PFGHF MAB_1716c|M.abscessus_ATCC_199 GPFLLAVSASLKTAKQFATGTPLAPPNPFTLANYTG-LADA----GFGRA Mflv_3853|M.gilvum_PYR-GCK VPMLWMISLAFKPPSDIVSGEPSFLPSTVTFDNFAQIFS---NPL-FTRA Mvan_2542|M.vanbaalenii_PYR-1 VPMLWMISLAFKPPSDIVSGKPSFLPSSITFDNFAQIFS---QPL-FTRA TH_2867|M.thermoresistible__bu FPVLWILSLSLKSTATVKDGK--LIPDEITFDNYKAIFRGGGSGV-FTSA *. : ::: * *: : Rv2039c|M.tuberculosis_H37Rv FFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLT Mb2065c|M.bovis_AF2122/97 FFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLT MMAR_3012|M.marinum_M FFNTVLYAGCVTAGQIFFCSLAGYAFARLEFRGRDTLFVLYLGTLMVPLT MUL_2253|M.ulcerans_Agy99 FFNTVLYAGCVTAGQIFFCSLAGYAFARLEFRGRDTLFVLYLGTLMVPLT MLBr_01425|M.leprae_Br4923 FFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLT MAV_2478|M.avium_104 FVNTVLYAGCVTAGHVFFCSLAGYAFARLDFRGRNTLFVVYLGTLMVPLT MSMEG_0517|M.smegmatis_MC2_155 FLNSFAVTGVVLVSNLVVCSLAGYAFARIRFLGRGALFITLMATLMVPFQ MAB_1716c|M.abscessus_ATCC_199 ALVTVLMTAIIVIGQLTFSVLAAYAFARLRFPGRDGLFWIYLATLMIPAT Mflv_3853|M.gilvum_PYR-GCK LINSIGIALVATVISVIIAMFAAYAIARLEFPGKKVLLSLALGIAMFPQA Mvan_2542|M.vanbaalenii_PYR-1 LINSIGIAVIATVISVIIAMFAAYAIARLEFPGKKVLLSLALGIAMFPQA TH_2867|M.thermoresistible__bu LINSIGIGLITTVIAVVVGGMAAYAVARLNFPGKRLLIGVALLIAMFPQI . :. : . :*.**.**: * *: *: : *.* Rv2039c|M.tuberculosis_H37Rv VTVIPQVILMRIVG-------WVDTPWAMIVPG-LFGSAFGTYLMRQFFR Mb2065c|M.bovis_AF2122/97 VTVIPQFILMRIVG-------WVDTPWAMIVPG-LFGSAFGTYLMRQFFR MMAR_3012|M.marinum_M VTVIPQFILMRTVG-------LVDTPWAMIVPG-LFGSAFGTYLMRQFFR MUL_2253|M.ulcerans_Agy99 VTVIPHFILMRTVG-------LVDTPWAMIVPG-LFGSAFGTYLMRQFFR MLBr_01425|M.leprae_Br4923 VTIIPQFILMRVLG-------WTDTPWAMIVPG-LFGSAFGTYLMRQFFR MAV_2478|M.avium_104 VTVIPQFLIMRTLG-------WVDTPWAMIVPG-FFGSAFGTYLMRQFFR MSMEG_0517|M.smegmatis_MC2_155 VTMIPVFLIVKWFGDNVWEGLGINHIGALMLP--NLATAFGIFFLRQFFL MAB_1716c|M.abscessus_ATCC_199 VTVVPMYLMLTQVG-------LRNTFWALVIPF-MFGSPYAIFLLREHFR Mflv_3853|M.gilvum_PYR-GCK ALVGPLFDMWRGLG-------IYDTWLGLIIPYLTFALPLSIWTMSAFFR Mvan_2542|M.vanbaalenii_PYR-1 ALVGPLFDMWRGLG-------IYDTWLGLIIPYLTFALPLSIWTMSAFFR TH_2867|M.thermoresistible__bu SLVTPLFNIERQLG-------LFDTWAGLIIPYITFALPLAIYTLSAFFR : * : .* : .:::* :. . . : : .* Rv2039c|M.tuberculosis_H37Rv TLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLW Mb2065c|M.bovis_AF2122/97 TLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLW MMAR_3012|M.marinum_M TLPSDLEEAATLDGCSPWQIYWRILLPHARPAVMVLGVLTWVNVWNDFLW MUL_2253|M.ulcerans_Agy99 TLPSDLEKAATLDGCSPWQIYWRILLPHARPAVMVLGVLTWVNVWNDFLW MLBr_01425|M.leprae_Br4923 TLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVLAVLTWVNVWNDFLW MAV_2478|M.avium_104 TLPTDLEEAAILDGCTPWQVYWRILLPHARPAVMVLAVLTWVNVWNDFLW MSMEG_0517|M.smegmatis_MC2_155 TVPVELEDAARVDGTSRLGVLFKIILPLSLPALSTLAALTVLTSWNDFLW MAB_1716c|M.abscessus_ATCC_199 TIPDDLIRAARLDGANTLDILWHVVVPVSRPILITLTLITVVSQWNNFMW Mflv_3853|M.gilvum_PYR-GCK QIPWEMEHAAQVDGATQWQAFRKVIVPLAAPGVFTTAILTFFFCWNDFLF Mvan_2542|M.vanbaalenii_PYR-1 QIPWEMEHAAQVDGATQWQAFRKVIVPLAAPGVFTTAILTFFFCWNDFLF TH_2867|M.thermoresistible__bu EIPWDLEKAAKMDGATPGQAFRKVIAPLAAPGIVTAAILVFIFAWNDLLL :* :: ** :** . ::: * : * : . :. . **::: Rv2039c|M.tuberculosis_H37Rv PLLMIQRNSLATLTLGLVRLRG--EYVARWPVLMAASMLMLVPLVILYAV Mb2065c|M.bovis_AF2122/97 PLLMIQRNSLATLTLGLVRLRG--EYVARWPVLMAASMLMLVPLVILYAV MMAR_3012|M.marinum_M PLLMVQRDSIATLTLGLVRMQG--EYVARWPVLMATSMLILLPLVVVYAV MUL_2253|M.ulcerans_Agy99 PLLMVQRDSIATLTLGLVRMQG--EYVARWPVLMATSMLILLPLVAVYAV MLBr_01425|M.leprae_Br4923 PLLMIQRNSLATLTLGLVRMRG--EYGTCWPVIMATSMLIILPLVIIYTI MAV_2478|M.avium_104 PLLMIQRSSLATLTLGLVRMKG--EYVARWPVLMAASMLIMLPLVIIYAI MSMEG_0517|M.smegmatis_MC2_155 PLIVITSQDQMTVPLGLSYFQG--AHRVKWPLLMAANVMSLLPMLLVFIG MAB_1716c|M.abscessus_ATCC_199 PLVITSGGNWRVLTVATAGLQS--QFNAQWPIVMAATTVAIVPLVILFVA Mflv_3853|M.gilvum_PYR-GCK AISLTSTDSARTVPAALAFFQGASYFESPVPYIMAASVIVTIPVVILVLV Mvan_2542|M.vanbaalenii_PYR-1 AISLTSTDSARTVPAALAFFQGASYFESPVPYIMAASVIVTIPVVILVLI TH_2867|M.thermoresistible__bu ALSLTATERAITAPVAIANFTGSSQFEEPTGSIAAGAMVITIPIIVFVLI .: : . . . : . . : * : :*:: . Rv2039c|M.tuberculosis_H37Rv AQRSFVRGIAVTGLGG Mb2065c|M.bovis_AF2122/97 AQRSFVRGIAVTGLGG MMAR_3012|M.marinum_M AQRAFIRGIAVTGLGG MUL_2253|M.ulcerans_Agy99 AQRAFIRGIAVTGLGG MLBr_01425|M.leprae_Br4923 AQRAFVRGITVTRIGG MAV_2478|M.avium_104 AQRSFVRGIAVTGMGG MSMEG_0517|M.smegmatis_MC2_155 AQRYFVQSVASTGLKG MAB_1716c|M.abscessus_ATCC_199 FQKYIVRSITLSGLK- Mflv_3853|M.gilvum_PYR-GCK FQRRIVAGLTSGAVKG Mvan_2542|M.vanbaalenii_PYR-1 FQRRIVAGLTSGAVKG TH_2867|M.thermoresistible__bu FQRRIVSGLTSGAVKG *: :: .:: :