For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
GSADRVVQRKIVRAVALYAALIAIAWCALFPILWALSGSLKKSGEVSEPRLLPSDPQWSNYAEVFTLMPF WRMFFNTVLYAGCVTAGQIFFCSLAGYAFARLEFRGRDTLFVLYLGTLMVPLTVTVIPQFILMRTVGLVD TPWAMIVPGLFGSAFGTYLMRQFFRTLPSDLEEAATLDGCSPWQIYWRILLPHARPAVMVLGVLTWVNVW NDFLWPLLMVQRDSIATLTLGLVRMQGEYVARWPVLMATSMLILLPLVVVYAVAQRAFIRGIAVTGLGG*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_3012 | - | - | 100% (280) | sugar ABC transporter |
| M. marinum M | MMAR_3618 | uspB | 3e-50 | 36.69% (278) | sugar-transport integral membrane protein ABC transporter |
| M. marinum M | MMAR_1899 | ugpE | 7e-42 | 33.94% (274) | SN-glycerol-3-phosphate transport integral membrane protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb2065c | - | 1e-145 | 85.71% (280) | sugar-transport integral membrane protein ABC transporter |
| M. gilvum PYR-GCK | Mflv_3853 | - | 5e-38 | 32.70% (263) | binding-protein-dependent transport systems inner membrane |
| M. tuberculosis H37Rv | Rv2039c | - | 1e-144 | 85.36% (280) | sugar-transport integral membrane protein ABC transporter |
| M. leprae Br4923 | MLBr_01425 | - | 1e-137 | 79.51% (283) | putative ABC-transport protein, inner membrane component |
| M. abscessus ATCC 19977 | MAB_1716c | - | 3e-53 | 38.95% (267) | sugar ABC transporter, permease protein |
| M. avium 104 | MAV_2478 | - | 1e-139 | 80.71% (280) | sugar ABC transporter, permease |
| M. smegmatis MC2 155 | MSMEG_0517 | - | 3e-57 | 40.66% (273) | sugar binding-protein dependent transporter system permease |
| M. thermoresistible (build 8) | TH_2867 | - | 3e-31 | 29.43% (282) | PUTATIVE binding-protein-dependent transport systems inner |
| M. ulcerans Agy99 | MUL_2253 | - | 1e-160 | 97.86% (280) | sugar ABC transporter |
| M. vanbaalenii PYR-1 | Mvan_2542 | - | 1e-37 | 31.94% (263) | binding-protein-dependent transport systems inner membrane |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_3012|M.marinum_M MGSADR------------------VVQRKIVRA--VALYAALIAIAWCAL
MUL_2253|M.ulcerans_Agy99 MGSADR------------------VVQRNIVRA--VALYAALIAIAWCAM
Mb2065c|M.bovis_AF2122/97 MGWADR------------------IVHRHFIRG--LALYAGLIGIAWCAL
Rv2039c|M.tuberculosis_H37Rv MGWADR------------------IVHRHFIRG--LALYAGLIGIAWCAL
MLBr_01425|M.leprae_Br4923 MGLAERLNH---------------IVKRSVLRA--VVVYIALTGIAWCAL
MAV_2478|M.avium_104 MGSSEA------------------VIKRTVLRA--ATVYAALLGIAWCAL
MSMEG_0517|M.smegmatis_MC2_155 MTTTPHITAPVAESTEPTVVEDFSPRRRTRLRLPFSPWHLVLIPVTFLLI
MAB_1716c|M.abscessus_ATCC_199 MTWSRN-----------------------------VLVYLLLTVGAVLTL
Mflv_3853|M.gilvum_PYR-GCK ------------------------------MTKNTKWWTIAGIVIVIYSF
Mvan_2542|M.vanbaalenii_PYR-1 ------------------------------MTKNTKWWTIAGIVIVIYSF
TH_2867|M.thermoresistible__bu -------------------------VNERVTARRATGWIVIDLLVILYAL
:
MMAR_3012|M.marinum_M FPILWALSGSLKKSGEVS--EPRLLPSDPQWSNYAEVFTLM----PFWRM
MUL_2253|M.ulcerans_Agy99 FPILWALSGSLKKGGEVS--EPRLLPSDPQWSNYAEVFTLM----PFWRM
Mb2065c|M.bovis_AF2122/97 FPIIWALSGSLKADGEVT--EPTLFPSHPQWSNYREVFALM----PFWRM
Rv2039c|M.tuberculosis_H37Rv FPIIWALSGSLKADGEVT--EPTLFPSHPQWSNYREVFALM----PFWRM
MLBr_01425|M.leprae_Br4923 FPIVWALSGSLKKEGEIR--EPTLLPAHPQWSNYTEVFDLI----PFWRM
MAV_2478|M.avium_104 FPIAWAVSGSLKTEGEVS--EPTLVPARPRWSNYTEVFALM----PIGRM
MSMEG_0517|M.smegmatis_MC2_155 LPLLWMLVTSLQTEGEANRFPPVLLPESPRFENYTEAWATA----PFGHF
MAB_1716c|M.abscessus_ATCC_199 GPFLLAVSASLKTAKQFATGTPLAPPNPFTLANYTG-LADA----GFGRA
Mflv_3853|M.gilvum_PYR-GCK VPMLWMISLAFKPPSDIVSGEPSFLPSTVTFDNFAQIFS---NPL-FTRA
Mvan_2542|M.vanbaalenii_PYR-1 VPMLWMISLAFKPPSDIVSGKPSFLPSSITFDNFAQIFS---QPL-FTRA
TH_2867|M.thermoresistible__bu FPVLWILSLSLKSTATVKDGK--LIPDEITFDNYKAIFRGGGSGV-FTSA
*. : ::: * *: :
MMAR_3012|M.marinum_M FFNTVLYAGCVTAGQIFFCSLAGYAFARLEFRGRDTLFVLYLGTLMVPLT
MUL_2253|M.ulcerans_Agy99 FFNTVLYAGCVTAGQIFFCSLAGYAFARLEFRGRDTLFVLYLGTLMVPLT
Mb2065c|M.bovis_AF2122/97 FFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLT
Rv2039c|M.tuberculosis_H37Rv FFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLT
MLBr_01425|M.leprae_Br4923 FFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLT
MAV_2478|M.avium_104 FVNTVLYAGCVTAGHVFFCSLAGYAFARLDFRGRNTLFVVYLGTLMVPLT
MSMEG_0517|M.smegmatis_MC2_155 FLNSFAVTGVVLVSNLVVCSLAGYAFARIRFLGRGALFITLMATLMVPFQ
MAB_1716c|M.abscessus_ATCC_199 ALVTVLMTAIIVIGQLTFSVLAAYAFARLRFPGRDGLFWIYLATLMIPAT
Mflv_3853|M.gilvum_PYR-GCK LINSIGIALVATVISVIIAMFAAYAIARLEFPGKKVLLSLALGIAMFPQA
Mvan_2542|M.vanbaalenii_PYR-1 LINSIGIAVIATVISVIIAMFAAYAIARLEFPGKKVLLSLALGIAMFPQA
TH_2867|M.thermoresistible__bu LINSIGIGLITTVIAVVVGGMAAYAVARLNFPGKRLLIGVALLIAMFPQI
. :. : . :*.**.**: * *: *: : *.*
MMAR_3012|M.marinum_M VTVIPQFILMRTVG-------LVDTPWAMIVPG-LFGSAFGTYLMRQFFR
MUL_2253|M.ulcerans_Agy99 VTVIPHFILMRTVG-------LVDTPWAMIVPG-LFGSAFGTYLMRQFFR
Mb2065c|M.bovis_AF2122/97 VTVIPQFILMRIVG-------WVDTPWAMIVPG-LFGSAFGTYLMRQFFR
Rv2039c|M.tuberculosis_H37Rv VTVIPQVILMRIVG-------WVDTPWAMIVPG-LFGSAFGTYLMRQFFR
MLBr_01425|M.leprae_Br4923 VTIIPQFILMRVLG-------WTDTPWAMIVPG-LFGSAFGTYLMRQFFR
MAV_2478|M.avium_104 VTVIPQFLIMRTLG-------WVDTPWAMIVPG-FFGSAFGTYLMRQFFR
MSMEG_0517|M.smegmatis_MC2_155 VTMIPVFLIVKWFGDNVWEGLGINHIGALMLP--NLATAFGIFFLRQFFL
MAB_1716c|M.abscessus_ATCC_199 VTVVPMYLMLTQVG-------LRNTFWALVIPF-MFGSPYAIFLLREHFR
Mflv_3853|M.gilvum_PYR-GCK ALVGPLFDMWRGLG-------IYDTWLGLIIPYLTFALPLSIWTMSAFFR
Mvan_2542|M.vanbaalenii_PYR-1 ALVGPLFDMWRGLG-------IYDTWLGLIIPYLTFALPLSIWTMSAFFR
TH_2867|M.thermoresistible__bu SLVTPLFNIERQLG-------LFDTWAGLIIPYITFALPLAIYTLSAFFR
: * : .* : .:::* :. . . : : .*
MMAR_3012|M.marinum_M TLPSDLEEAATLDGCSPWQIYWRILLPHARPAVMVLGVLTWVNVWNDFLW
MUL_2253|M.ulcerans_Agy99 TLPSDLEKAATLDGCSPWQIYWRILLPHARPAVMVLGVLTWVNVWNDFLW
Mb2065c|M.bovis_AF2122/97 TLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLW
Rv2039c|M.tuberculosis_H37Rv TLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLW
MLBr_01425|M.leprae_Br4923 TLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVLAVLTWVNVWNDFLW
MAV_2478|M.avium_104 TLPTDLEEAAILDGCTPWQVYWRILLPHARPAVMVLAVLTWVNVWNDFLW
MSMEG_0517|M.smegmatis_MC2_155 TVPVELEDAARVDGTSRLGVLFKIILPLSLPALSTLAALTVLTSWNDFLW
MAB_1716c|M.abscessus_ATCC_199 TIPDDLIRAARLDGANTLDILWHVVVPVSRPILITLTLITVVSQWNNFMW
Mflv_3853|M.gilvum_PYR-GCK QIPWEMEHAAQVDGATQWQAFRKVIVPLAAPGVFTTAILTFFFCWNDFLF
Mvan_2542|M.vanbaalenii_PYR-1 QIPWEMEHAAQVDGATQWQAFRKVIVPLAAPGVFTTAILTFFFCWNDFLF
TH_2867|M.thermoresistible__bu EIPWDLEKAAKMDGATPGQAFRKVIAPLAAPGIVTAAILVFIFAWNDLLL
:* :: ** :** . ::: * : * : . :. . **:::
MMAR_3012|M.marinum_M PLLMVQRDSIATLTLGLVRMQG--EYVARWPVLMATSMLILLPLVVVYAV
MUL_2253|M.ulcerans_Agy99 PLLMVQRDSIATLTLGLVRMQG--EYVARWPVLMATSMLILLPLVAVYAV
Mb2065c|M.bovis_AF2122/97 PLLMIQRNSLATLTLGLVRLRG--EYVARWPVLMAASMLMLVPLVILYAV
Rv2039c|M.tuberculosis_H37Rv PLLMIQRNSLATLTLGLVRLRG--EYVARWPVLMAASMLMLVPLVILYAV
MLBr_01425|M.leprae_Br4923 PLLMIQRNSLATLTLGLVRMRG--EYGTCWPVIMATSMLIILPLVIIYTI
MAV_2478|M.avium_104 PLLMIQRSSLATLTLGLVRMKG--EYVARWPVLMAASMLIMLPLVIIYAI
MSMEG_0517|M.smegmatis_MC2_155 PLIVITSQDQMTVPLGLSYFQG--AHRVKWPLLMAANVMSLLPMLLVFIG
MAB_1716c|M.abscessus_ATCC_199 PLVITSGGNWRVLTVATAGLQS--QFNAQWPIVMAATTVAIVPLVILFVA
Mflv_3853|M.gilvum_PYR-GCK AISLTSTDSARTVPAALAFFQGASYFESPVPYIMAASVIVTIPVVILVLV
Mvan_2542|M.vanbaalenii_PYR-1 AISLTSTDSARTVPAALAFFQGASYFESPVPYIMAASVIVTIPVVILVLI
TH_2867|M.thermoresistible__bu ALSLTATERAITAPVAIANFTGSSQFEEPTGSIAAGAMVITIPIIVFVLI
.: : . . . : . . : * : :*:: .
MMAR_3012|M.marinum_M AQRAFIRGIAVTGLGG
MUL_2253|M.ulcerans_Agy99 AQRAFIRGIAVTGLGG
Mb2065c|M.bovis_AF2122/97 AQRSFVRGIAVTGLGG
Rv2039c|M.tuberculosis_H37Rv AQRSFVRGIAVTGLGG
MLBr_01425|M.leprae_Br4923 AQRAFVRGITVTRIGG
MAV_2478|M.avium_104 AQRSFVRGIAVTGMGG
MSMEG_0517|M.smegmatis_MC2_155 AQRYFVQSVASTGLKG
MAB_1716c|M.abscessus_ATCC_199 FQKYIVRSITLSGLK-
Mflv_3853|M.gilvum_PYR-GCK FQRRIVAGLTSGAVKG
Mvan_2542|M.vanbaalenii_PYR-1 FQRRIVAGLTSGAVKG
TH_2867|M.thermoresistible__bu FQRRIVSGLTSGAVKG
*: :: .:: :