For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
SNEKTGTADITEDTTAAADEPATDTEQPAKGTDDAESAADKTGAEETDTVDEDAEVTEDADEDAEVTEDD DEDAEVTEDAGEDAEATDDAAVTPKRDGKWARLTAFVLLPALALVLALGAGYLKWQDTTFRSGAIEASPS GRLSLAEKTVQIARDSTIALLSYKPDTVEQQLGAARDLLTGEFRDSYTSLTNDVVIPGAKEKQISAVASV PAAASVSATPTEAVVLLFVNQTVSVGADVPTDTASSVRVTLEKVGDRWLISKFDPV*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. vanbaalenii PYR-1 | Mvan_4597 | - | - | 100% (267) | hypothetical protein Mvan_4597 |
| M. vanbaalenii PYR-1 | Mvan_0520 | - | 2e-45 | 47.69% (216) | hypothetical protein Mvan_0520 |
| M. vanbaalenii PYR-1 | Mvan_0918 | - | 5e-42 | 53.94% (165) | hypothetical protein Mvan_0918 |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb1397c | - | 1e-25 | 36.09% (230) | hypothetical protein Mb1397c |
| M. gilvum PYR-GCK | Mflv_2108 | - | 3e-77 | 66.38% (232) | hypothetical protein Mflv_2108 |
| M. tuberculosis H37Rv | Rv1973 | - | 5e-48 | 58.08% (167) | MCE associated membrane protein |
| M. leprae Br4923 | MLBr_02615 | - | 3e-08 | 26.82% (179) | hypothetical protein MLBr_02615 |
| M. abscessus ATCC 19977 | MAB_4593c | - | 8e-13 | 28.29% (251) | hypothetical protein MAB_4593c |
| M. marinum M | MMAR_4045 | - | 6e-53 | 47.13% (261) | hypothetical protein MMAR_4045 |
| M. avium 104 | MAV_1970 | - | 2e-61 | 53.73% (255) | hypothetical protein MAV_1970 |
| M. smegmatis MC2 155 | MSMEG_0353 | - | 1e-45 | 53.51% (185) | hypothetical protein MSMEG_0353 |
| M. thermoresistible (build 8) | TH_4601 | - | 4e-54 | 57.95% (195) | PUTATIVE putative hypothetical protein Mflv_2108 |
| M. ulcerans Agy99 | MUL_3911 | - | 6e-53 | 47.13% (261) | hypothetical protein MUL_3911 |
CLUSTAL 2.0.9 multiple sequence alignment
Mvan_4597|M.vanbaalenii_PYR-1 ---MSNEKTGTADITEDTTAAADEPATDTEQPAKGTDDAESAADKTGAEE
Mflv_2108|M.gilvum_PYR-GCK ---MTDDVKG-----DEANKSVDDKNDENK--------VEAAPEAEAVES
Rv1973|M.tuberculosis_H37Rv --------------------------------------------------
MAV_1970|M.avium_104 ---MSRLTWP-----KRSKSAPEDVALDAN-------EVTEVSTTEAPGT
TH_4601|M.thermoresistible__bu --------------------------------------VTATTGIEGSET
MMAR_4045|M.marinum_M MAKGSAETSG-----DEVSGKPLPADEPGDEAQSNPAGADSDSDSDAEPD
MUL_3911|M.ulcerans_Agy99 MAKGSAETSG-----DELSGKPLPADEPGDEAQSNPAGADSDSDSDAEPD
MSMEG_0353|M.smegmatis_MC2_155 ------MLAA-----QEVS-------------------------------
Mb1397c|M.bovis_AF2122/97 -----------------------------------MTDDVRDVNTETTDA
MLBr_02615|M.leprae_Br4923 --------------MRNRWRLLAFDVVAPLVAIAALVMIGVVLDWPRWWV
MAB_4593c|M.abscessus_ATCC_199 ---MADDAADKDAKNADESAVTSDAEKAESSAPSSAAVESTAEGTTEAAT
Mvan_4597|M.vanbaalenii_PYR-1 TDTVDEDAEVTEDADEDAEVTEDDDEDAEVTEDAGEDAEATDDAAVTPKR
Mflv_2108|M.gilvum_PYR-GCK TEAVES-TEAVEPTGTDPEAT-----DADVTAAA-------------PTR
Rv1973|M.tuberculosis_H37Rv --------------------------------------------------
MAV_1970|M.avium_104 DEAETETDTAADSTGDTTDETSAEPTEGTVGEDE-----------PAAEW
TH_4601|M.thermoresistible__bu TGPAEADTVAGDTSGR----------------------------------
MMAR_4045|M.marinum_M TEPDSESDGEPDADAPAETEDASQPEDSRPRRRR-------------PHP
MUL_3911|M.ulcerans_Agy99 TEPDSESDGEPDADAPAETEDASQPEDSRPRRRR-------------PHP
MSMEG_0353|M.smegmatis_MC2_155 ---------EPEAAQPQS--------DSGPRRS-----------------
Mb1397c|M.bovis_AF2122/97 TEVAEIDSAAGEAGDSATEAFDTDSATESTAQKG-------------QRH
MLBr_02615|M.leprae_Br4923 SACSVLVLLIVEGVGVNFWLLRRDSVTIGTDDDAP---------------
MAB_4593c|M.abscessus_ATCC_199 AEVADFDAEDSEKTKDSGAVEDSDDEDISLEPDEEE---------NPKRI
Mvan_4597|M.vanbaalenii_PYR-1 DGKWARLTAFVLLPALALVLALGAG-------YLKWQDTTFRSGAIEASP
Mflv_2108|M.gilvum_PYR-GCK RVEWSRVVAFLVLPALALVLAAGAG-------YLKWLDDSYRDGSMSVDG
Rv1973|M.tuberculosis_H37Rv -MSWSRVIAYGLLPGLALALTCGAG-------LLKWQDGAVRDAAVAR--
MAV_1970|M.avium_104 RVDWSRVVAFGVLPAIALLLAAAAG-------FFKWQDNSVRNTDIAR--
TH_4601|M.thermoresistible__bu --SWLRIVTHAVLPALIVVSALGAG-------YLKWMDGTADAVDRAR--
MMAR_4045|M.marinum_M KSSWAAVLAWVVLPSLALLLAITAG-------VLRWQYDTMRYAQIAG--
MUL_3911|M.ulcerans_Agy99 KSSWAAVLAWVVLPSLALLLAITAG-------VLRWQYDTMRYAQIAG--
MSMEG_0353|M.smegmatis_MC2_155 ----VRVLAYVVIPLLIVGLAACAG-------YLQWRSSSMRAAQAAN--
Mb1397c|M.bovis_AF2122/97 RDLWRMQVTLKPVPVILILLMLISGGATGWLYLEQYRPDQQTDSGAAR--
MLBr_02615|M.leprae_Br4923 ----GLRLAVVSVCTAALCAAVLIG-------YMHWTSPDRDFSLDSR--
MAB_4593c|M.abscessus_ATCC_199 RGRHWALTAAAIVAIAIVALAAIIG---------RLYEEQRIEEQSSR--
: : : * :
Mvan_4597|M.vanbaalenii_PYR-1 SGRLSLAEKTVQIARDSTIALLSYKPDTVEQQLGAARDLLTGEFRDSYTS
Mflv_2108|M.gilvum_PYR-GCK NGRPSLAETSVQAARDSTIALLSYAPDTVEQQLGAARELLTGEFRDSYTS
Rv1973|M.tuberculosis_H37Rv -------AESVRAATDGTTALLSYRPDTVQHDLESARSRLTGTFLDAYTQ
MAV_1970|M.avium_104 -------IESVQTAKDSTIAMLSYKPDTVEQQLRSARDLLTGEFRDSYTS
TH_4601|M.thermoresistible__bu -------VESVQAATDITIAMLSYQPDTVEEDLGAARDRMTGEFRDSYTS
MMAR_4045|M.marinum_M -------VQALQAAREGTVAMLSYKPETVEKDLTAAQDHLTGTFRDSYTQ
MUL_3911|M.ulcerans_Agy99 -------VQALQAAREGTVAMLSYKPETVEKDLTAAQDHLTGTFRDSYTQ
MSMEG_0353|M.smegmatis_MC2_155 -------VSAVPAATDSTIKMLSYKPDTVQKDLELAAEGLTGPFRDDYNS
Mb1397c|M.bovis_AF2122/97 --------AAGAAASDGTIALLSYSPDTLDQDFATARSHLAGDFLSYYDQ
MLBr_02615|M.leprae_Br4923 --------EVVQIATGMAEAMASFTPSAPTSSIDRAAAMIMPDQAGVFKE
MAB_4593c|M.abscessus_ATCC_199 --------EALAAAQEFANVMINVDSAKLDESSNKTLERSTGDFKQKYSE
* : : . . . : : .
Mvan_4597|M.vanbaalenii_PYR-1 LTNDVVIPGAKEKQISAVASVPAAASVSATPTEAVVLLFVNQTVSVGADV
Mflv_2108|M.gilvum_PYR-GCK LTNDVVIPGAKEKQIAAIATVPAAASVSVTADEAVVLLFVNQTVTVGPDA
Rv1973|M.tuberculosis_H37Rv LTHDVVIPGAQQKQISAVATVAAAASVSTSADRAVVLLFVNQTITVGKDA
MAV_1970|M.avium_104 LITDVVIPGAKQQQISAEASIPAAASVSADPREAVVLVFVNQTTIIGKSA
TH_4601|M.thermoresistible__bu LTNDVVIPGAREKRISTVATVPAAASVQASTDHAVVVVFVNQATTVGDDV
MMAR_4045|M.marinum_M LTKDVVIPGAKQQRISAVARVPAAATVSADWGHAVVLVFVDQTTVIGDDP
MUL_3911|M.ulcerans_Agy99 LTKDVVIPGAKQQRISAVARVPAAATVSADWGHAVVLVFVDQTTVIGDDP
MSMEG_0353|M.smegmatis_MC2_155 LIHDVVIPGAQEKQISAVATVPAAAVVSATGNRAVVMVFVNQTTIVGADP
Mb1397c|M.bovis_AF2122/97 FTQQIVAPAAKQKSLKTTAKVVRAAVSELHPDSAVVLVFVDQSTTSKDSP
MLBr_02615|M.leprae_Br4923 QYRKSSADLAR-RNVTAQASVLAAGVEAIGSSAASVAVILRVTQNTPGQP
MAB_4593c|M.abscessus_ATCC_199 SS-TTLRQVMIENKAKATGVVVDSAVKSAAPDKVEVLLFIDQAVSNVAIP
. : . : :. . * ::: :
Mvan_4597|M.vanbaalenii_PYR-1 -PTDTASSVRVTLEKVGDRWLISKFDPV---
Mflv_2108|M.gilvum_PYR-GCK -PTDTASSVRVTLEKDGDRWLISKFDPV---
Rv1973|M.tuberculosis_H37Rv -PTTAASSVRVTLDNINGRWLISQFEPI---
MAV_1970|M.avium_104 -PTDTASTVRVTLNKAGDRWLISKFEPV---
TH_4601|M.thermoresistible__bu -PTDTASTVRVTLEKVDDQWLMSGFEPI---
MMAR_4045|M.marinum_M -PTDMASTVRVKLDKVGDRWLISEFQPI---
MUL_3911|M.ulcerans_Agy99 -PTDMASTVRVKLDKVGDRWLISEFQPI---
MSMEG_0353|M.smegmatis_MC2_155 -PTSTASTVRVTMDKVGERWLVSDFTPI---
Mb1397c|M.bovis_AF2122/97 NPSMAASSVMVTLAKVDGNWLITKFTPV---
MLBr_02615|M.leprae_Br4923 -PSQAAPAVRVTLIKRGSDWLVTDVLSINAR
MAB_4593c|M.abscessus_ATCC_199 DARMDRSRVQITMQKVDGRWLASDVELT---
. . * :.: : . ** : .