For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
ATKGPERWTTGIALPNGLSGAMAAVGGFFSMALDAVRFVFVRPFQWREFLEQCWFVARVSMAPTLLVAIP FTVLVSFTLNILLRELGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEIDAMEVL GINPVQRLVTPRMLAAGLVALLLNSLVVIIGILGGYFFSVFVQDVNPGAFAAGITLLTGVPEVIISCVKA ALFGLIAGLVACYRGLTITGGGAKAVGNAVNETVVYAFMALFVINVVVTAIGIRMTTG*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. vanbaalenii PYR-1 | Mvan_4152 | - | - | 100% (269) | hypothetical protein Mvan_4152 |
M. vanbaalenii PYR-1 | Mvan_2849 | - | e-126 | 86.52% (267) | hypothetical protein Mvan_2849 |
M. vanbaalenii PYR-1 | Mvan_5204 | - | 3e-94 | 71.49% (235) | hypothetical protein Mvan_5204 |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3531c | yrbE4A | 1e-98 | 72.84% (243) | integral membrane protein YrbE4a |
M. gilvum PYR-GCK | Mflv_2506 | - | 1e-144 | 97.03% (269) | hypothetical protein Mflv_2506 |
M. tuberculosis H37Rv | Rv3501c | yrbE4A | 1e-98 | 72.84% (243) | integral membrane protein YrbE4a |
M. leprae Br4923 | MLBr_02587 | yrbE1A | 2e-88 | 62.55% (251) | hypothetical protein MLBr_02587 |
M. abscessus ATCC 19977 | MAB_4155c | - | 4e-97 | 71.03% (252) | hypothetical protein MAB_4155c |
M. marinum M | MMAR_4712 | - | 1e-128 | 87.64% (267) | hypothetical protein MMAR_4712 |
M. avium 104 | MAV_0946 | - | 1e-127 | 87.12% (264) | TrnB1 protein |
M. smegmatis MC2 155 | MSMEG_4796 | - | 1e-127 | 89.88% (257) | hypothetical protein MSMEG_4796 |
M. thermoresistible (build 8) | TH_0393 | - | 1e-129 | 87.04% (270) | CONSERVED HYPOTHETICAL INTEGRAL MEMBRANE PROTEIN YRBE4A |
M. ulcerans Agy99 | MUL_4064 | yrbE4A | 2e-98 | 69.92% (256) | membrane protein YrbE4A |
CLUSTAL 2.0.9 multiple sequence alignment Mb3531c|M.bovis_AF2122/97 -------------------------MIQQ---LAVPARAVGGFFEMSMDT MUL_4064|M.ulcerans_Agy99 MKASADPGLALGKHWRRRRLGRGTELIQQ---LAVPARAVGGFFEMSIDT Rv3501c|M.tuberculosis_H37Rv -------------------------MIQQ---LAVPARAVGGFFEMSMDT MAB_4155c|M.abscessus_ATCC_199 -------------------------MKQQ---LAAPARAVGGFVSMSLAT Mvan_4152|M.vanbaalenii_PYR-1 -----------MATKGPERWTTGIALPNG---LSGAMAAVGGFFSMALDA Mflv_2506|M.gilvum_PYR-GCK -----------MAVKGPERWTTGISLPNG---LSGAMQAVGGFFSMALDA TH_0393|M.thermoresistible__bu -----------MVNKAVDRWSTGLPLPAGG--TAGTLRAVGGLFSMSVDA MMAR_4712|M.marinum_M -----------MANRAADRWTPGITFGRG----SKPMQAVGGLFAMSADA MAV_0946|M.avium_104 -----------MADLRAERWSTGLPALRLKVDVSGAMQAVGALFAMSADA MSMEG_4796|M.smegmatis_MC2_155 -----------------------MNLGRN---LSGPMQAVGALFSMSLDA MLBr_02587|M.leprae_Br4923 --------------MTTETRSSLVEYAHTK--LQTPLVLVGGFFRMLVLT . **.:. * : Mb3531c|M.bovis_AF2122/97 ARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLRE MUL_4064|M.ulcerans_Agy99 ARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLRE Rv3501c|M.tuberculosis_H37Rv ARAAFRRPFQFREFLDQTWMVARVSLVPTLLVSIPFTVLVAFTLNILLRE MAB_4155c|M.abscessus_ATCC_199 FRNIFRRPFQGQEFLDQTWFIARVSLLPTLLVAIPFTVLVAFTLNILLRE Mvan_4152|M.vanbaalenii_PYR-1 VRFVFVRPFQWREFLEQCWFVARVSMAPTLLVAIPFTVLVSFTLNILLRE Mflv_2506|M.gilvum_PYR-GCK VRFVFVRPFQWREFLEQSWFVAKVSMAPTLLVAIPFTVLVSFTLNILLRE TH_0393|M.thermoresistible__bu VRFAFRRPFQGREFLEQSWFVARVALLPTLLVAIPFTVLVSFTLNILLRE MMAR_4712|M.marinum_M IKFAFRRPFQWREFLEQSWFVARVAMLPTLLVAIPFTVLVSFTLNILLRE MAV_0946|M.avium_104 VKYLFRRPFQWREFLEQSWFVARVSLAPTLLVAIPFTVLVSFTLNILLRE MSMEG_4796|M.smegmatis_MC2_155 IMFAFRRPFQGREFLDQCWFIARVSMAPTLLVAIPFTVLVSFTLNILLRE MLBr_02587|M.leprae_Br4923 GKALFRRPFQWREFILQCWFIMRVAFLPTVMVSIPLTVLLIFTLNVLLAQ * **** :**: * *:: :*:: **::*:**:***: ****:** : Mb3531c|M.bovis_AF2122/97 IGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID MUL_4064|M.ulcerans_Agy99 IGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID Rv3501c|M.tuberculosis_H37Rv IGAADLSGAGTAFGTITQLGPVVTVLVVAGAGATAICADLGARTIREEID MAB_4155c|M.abscessus_ATCC_199 IGAADLSGAATAFGTVTQLGPVVTVLVVAGAGATAICADLGARTIREEID Mvan_4152|M.vanbaalenii_PYR-1 LGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEID Mflv_2506|M.gilvum_PYR-GCK LGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEID TH_0393|M.thermoresistible__bu LGAADLSGAGAAFGAVTQVGPMVTVLIVAGAGATAMCADLGSRTIRDEVD MMAR_4712|M.marinum_M LGAADLSGAGAAFGAVTQVGPLVTVLIVAGAGATAMCADLGSRTIREEID MAV_0946|M.avium_104 LGAADLSGAGAAFGAVTQLGPLVTVLIVAGAGATAMCADLGSRTIREEID MSMEG_4796|M.smegmatis_MC2_155 LGAADLSGAGAAFGAVTQLGPMVTVLIVAGAGATAMCADLGSRTIREEID MLBr_02587|M.leprae_Br4923 FSAADLSGAGAAIGAVTQLGPLTTVLVVAGAGSTSICADLGARTIREEID :.*******.:*:*::**:**:.***:*****:*::*****:****:*:* Mb3531c|M.bovis_AF2122/97 AMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGV MUL_4064|M.ulcerans_Agy99 AMRVLGIDPIQRLVVPRVLASTVVALLLNGLVCAIGLSGGYAFSVFLQGV Rv3501c|M.tuberculosis_H37Rv AMRVLGIDPIQRLVVPRVLASTLVALLLNGLVCAIGLSGGYAFSVFLQGV MAB_4155c|M.abscessus_ATCC_199 AMQVLGIDPIQRLVVPRVLASTFVALLLNGLVCAIGMVGGYVFSVFLQGV Mvan_4152|M.vanbaalenii_PYR-1 AMEVLGINPVQRLVTPRMLAAGLVALLLNSLVVIIGILGGYFFSVFVQDV Mflv_2506|M.gilvum_PYR-GCK AMEVLGINPVQRLVTPRMLASGLVALLLNSLVVIIGILGGYFFSIFVQDV TH_0393|M.thermoresistible__bu ALEVLGINPVQRLVTPRMLASGLVALLLNSLVVIIGILGGYTFSVFVQDV MMAR_4712|M.marinum_M AMEVLGINPVQRLVTPRMLASGLVALLLNSLVVIIGIVGGYVFSVFVQDV MAV_0946|M.avium_104 AMEVLGINPIQRLVTPRMLASGLVAFLLNSLVVIIGVLGGYVFSVFVQDV MSMEG_4796|M.smegmatis_MC2_155 AMEVLGINPIQRLVTPRILASGLVALLLNSLVVIIGILGGYVFSVFIQDV MLBr_02587|M.leprae_Br4923 AMEVLGIDPIHRLVVPRVLAATLVATLLNGLVITVGLVGGYLFGVYLQNV *:.****:*::***.**:**: .** ***.** :*: *** *.:::*.* Mb3531c|M.bovis_AF2122/97 NPGAFINGLTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGG-PKG MUL_4064|M.ulcerans_Agy99 NPGAFINGLTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGG-PKG Rv3501c|M.tuberculosis_H37Rv NPGAFINGLTVLTGLRELILAEIKALLFGVMAGLVGCYRGLTVKGG-PKG MAB_4155c|M.abscessus_ATCC_199 NPGAFINGLTVLTGLGELMISEVKAFLFGIFAGLVGCYRGLTVKGG-PKG Mvan_4152|M.vanbaalenii_PYR-1 NPGAFAAGITLLTGVPEVIISCVKAALFGLIAGLVACYRGLTITGGGAKA Mflv_2506|M.gilvum_PYR-GCK NPGAFAAGITLLTGVPEVIISCVKAALFGLIAGLVACYRGLTITGGGAKA TH_0393|M.thermoresistible__bu NPGAFAAGITLLTGVPEVIISCVKAALFGLIAGLVACYRGLTISGGGAKA MMAR_4712|M.marinum_M NPGAFAAGITLLTGVPEVIISCVKAALFGLIAGLVACYRGLTISGGGAKA MAV_0946|M.avium_104 NPGAFAAGITLLTGVPEVVISCIKAALFGLIAGLVACYRGLSITGGGAKA MSMEG_4796|M.smegmatis_MC2_155 NPGAFAAGITLLTGVPEVIISCIKAALFGLIAGLVACYRGLTIVGGGAKA MLBr_02587|M.leprae_Br4923 SGGAYLATLTTITGLPEVVIATVKAATFGLIAGLVGCYRGLIVRGG-SNG . **: :* :**: *:::: :** **::****.***** : ** .:. Mb3531c|M.bovis_AF2122/97 VGNAVNETVVYAFICLFVINVVMTAIGVRISAQ- MUL_4064|M.ulcerans_Agy99 VGNAVNETVVYAFICLFVINVVMTAIGVRISAR- Rv3501c|M.tuberculosis_H37Rv VGNAVNETVVYAFICLFVINVVMTAIGVRISAQ- MAB_4155c|M.abscessus_ATCC_199 VGDAVNETVVYAFICLFVINVVMTAIGVRVLVKH Mvan_4152|M.vanbaalenii_PYR-1 VGNAVNETVVYAFMALFVINVVVTAIGIRMTTG- Mflv_2506|M.gilvum_PYR-GCK VGNAVNETVVYAFMALFVINVVVTAIGIRMTTG- TH_0393|M.thermoresistible__bu VGNAVNETVVYAFMALFVVNVVVTAIGIRMTAG- MMAR_4712|M.marinum_M VGNAVNETVVYAFMSLFVVNVVVTAIGIRMSAK- MAV_0946|M.avium_104 VGNAVNETVVYAFMSLFVVNVVVTAIGIKMTAK- MSMEG_4796|M.smegmatis_MC2_155 VGNAVNETVVYAFMALFVINVVVTAIGIRMTTG- MLBr_02587|M.leprae_Br4923 LGAAVNETVVLCVVALYAVNVVLTTIGVRFGTGH :* ******* ..:.*:.:***:*:**::. .