For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VSLRIGILGASRIAASAIVEPARELGHRLIAVAARDPLRTQAFADKYGVERVLASYQDVVTDPQVDIVYN PLANALHAPWNLAAVAAGKPVLTEKPYARDRGEAARVAAAADAAGVTVMEGFHYLFHPVTQRALSLAGDG TLGELTRIEVRMGMPAPQSDDPRWSLELAGGALMDLGCYGLHVMRRFGTPSVLAATAVQRTPGVDERFDA ELVFPSGLTGLTTNSMVDDEYSFTLRLIGTRGEAFVHDFIKPHDDDRLTLHTEDGTTVERHGTRTSYTYQ LEAFTDHVERGTPIPLDTADAVANMALIDEAYRAAGMSPR
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. vanbaalenii PYR-1 | Mvan_3970 | - | - | 100% (320) | oxidoreductase domain-containing protein |
M. vanbaalenii PYR-1 | Mvan_0541 | - | 2e-10 | 25.27% (186) | oxidoreductase domain-containing protein |
M. vanbaalenii PYR-1 | Mvan_3968 | - | 2e-09 | 28.43% (204) | inositol 2-dehydrogenase |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb1781 | - | 9e-10 | 42.05% (88) | hypothetical protein Mb1781 |
M. gilvum PYR-GCK | Mflv_2611 | - | 1e-149 | 79.38% (320) | oxidoreductase domain-containing protein |
M. tuberculosis H37Rv | Rv1752 | - | 1e-09 | 42.05% (88) | hypothetical protein Rv1752 |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_2306c | - | 5e-26 | 28.40% (324) | putative oxidoreductase |
M. marinum M | MMAR_2628 | - | 2e-69 | 45.65% (322) | hypothetical protein MMAR_2628 |
M. avium 104 | MAV_2987 | - | 2e-69 | 44.10% (322) | NAD binding oxidoreductase |
M. smegmatis MC2 155 | MSMEG_4652 | - | 1e-122 | 66.06% (327) | D-oliose 4-ketoreductase |
M. thermoresistible (build 8) | - | - | - | - | - |
M. ulcerans Agy99 | MUL_3103 | - | 1e-30 | 43.60% (172) | hypothetical protein MUL_3103 |
CLUSTAL 2.0.9 multiple sequence alignment Mvan_3970|M.vanbaalenii_PYR-1 --------MS-LRIGILGASRIAASAIVEP-ARELGHRLIAVAARDPLRT Mflv_2611|M.gilvum_PYR-GCK --------MT-LRIGVLGASRIAEAAIVEP-ARELGFRLVAVAARDPQRA MSMEG_4652|M.smegmatis_MC2_155 --------MTGLRIGILGASRIAEKAIVGP-AEDLGHRLVAVAARDRRRA MMAR_2628|M.marinum_M ----MTGHGSPLRIGILGAARIAPQALVKPAQGNVEAVVAAVAARDGARA MUL_3103|M.ulcerans_Agy99 -------------------------------------------------- MAV_2987|M.avium_104 MSAMAEVHAPKLRIGILGAARIAPLALIKPSAENPDVVVAAVAARDASRA Mb1781|M.bovis_AF2122/97 -------------------------------------------------- Rv1752|M.tuberculosis_H37Rv -------------------------------------------------- MAB_2306c|M.abscessus_ATCC_199 -------MPESIRWGIVGPGRIAG-NVARDFPLTPRAELAAVASRSLPRA Mvan_3970|M.vanbaalenii_PYR-1 QAFADKYGVERVLASYQDVVTDPQVDIVYNPLANALHAPWNLAAVAAGKP Mflv_2611|M.gilvum_PYR-GCK NIFADTYGVERVVPTYQDVVTDPEVDVVYNPLANSLHAPWNLAAVAAGKP MSMEG_4652|M.smegmatis_MC2_155 EAFAEKYGVQRVLDSYRDVVEDPDVDMVYNPLANGLHAPWNLAAIAAGKP MMAR_2628|M.marinum_M QAFAAKHGISRVHSSYEALIADPTLDAVYIPLPNGLHGRWTQAALTAGKH MUL_3103|M.ulcerans_Agy99 -------------------------------------------------- MAV_2987|M.avium_104 RAFATRHGIATVHDHYEALIADPDIDAIYNPLPNGLHGRWTRAALAAGKH Mb1781|M.bovis_AF2122/97 -------------------------------------------------- Rv1752|M.tuberculosis_H37Rv -------------------------------------------------- MAB_2306c|M.abscessus_ATCC_199 QDFAGAHQIPRAYGSYRELLADPDIDAVYIATPHPQHRQTAIAALTAGKA Mvan_3970|M.vanbaalenii_PYR-1 VLTEKPYARDRGEAARVAAAADAAGVTVMEGFHYLFHPVTQRALSLAGDG Mflv_2611|M.gilvum_PYR-GCK VLSEKPFARNRAEAARVASAADAAGVTVMEGFHYLFHPVTQRALALAGDG MSMEG_4652|M.smegmatis_MC2_155 VLSEKPFARNESEAATVAQAARDAGVPVLEGFHYHFHPVTQRAFAVAAGG MMAR_2628|M.marinum_M VLCEKPFTANAAEADEIAQLAATTDRVVMEAFHYRYHPLTLRIEQILASG MUL_3103|M.ulcerans_Agy99 -------------------------------------------------- MAV_2987|M.avium_104 VLCEKPFTANAAEAREIADLAEHSDRVVMEAFHYRYHPLTLRAEEIIASG Mb1781|M.bovis_AF2122/97 -------------------------------------------------- Rv1752|M.tuberculosis_H37Rv -------------------------------------------------- MAB_2306c|M.abscessus_ATCC_199 ILVEKTFTATVSGAQEVIDIARARGVFAMEAMWTRFQPAIVAAKDLVDDG Mvan_3970|M.vanbaalenii_PYR-1 TLGELTRIEVRMGMPAPQS-DDPRWSLELAGGALMDLGCYGLHVMRRFG- Mflv_2611|M.gilvum_PYR-GCK TLGELRRVEVRMGMPEPKP-DDPRWSLELAGGALMDLGCYGVHVLRRFG- MSMEG_4652|M.smegmatis_MC2_155 ELGEITRVEVRMAMPSPAD-DDPRWSLDLAGGAVMDLGCYGIHVMRALGA MMAR_2628|M.marinum_M ELGTLQRVETSMCFPLPKF-SDIRYNYALAGGATMDAGCYAVHMARTFG- MUL_3103|M.ulcerans_Agy99 -----------MRFPLPKF-SDIRYNYALAGGATMDAGCYAVHMARTFG- MAV_2987|M.avium_104 ELGTLQHVEAALCFPLPKF-SDIRYDYALAGGATMDAGCYAVHMARTFG- Mb1781|M.bovis_AF2122/97 ----------------------------------MDAGCYAVHMAHTFG- Rv1752|M.tuberculosis_H37Rv ----------------------------------MDAGCYAVHMAHTFG- MAB_2306c|M.abscessus_ATCC_199 AIGEVRQVQADLGVDRPFDREDRLFNPALGGGALLDLGVYVVSLAQYFLG :* * * : : : : Mvan_3970|M.vanbaalenii_PYR-1 --------TPSVLAATAVQRTPGVDERFDAELVFPSGLTGLTTNSMVDDE Mflv_2611|M.gilvum_PYR-GCK --------VPSILSATAVQRSAGVDATLDAEVVFPSGLTGLTANSMVQDD MSMEG_4652|M.smegmatis_MC2_155 MRVDGLGGEPKVLGARAEERTPGVDAWCEVDFVFPEGGTGVSTNSMVADD MMAR_2628|M.marinum_M ------GGTPEVVSAQAKRRDSEVDRAMTAELRFPAGHSGRIQCSMWSSH MUL_3103|M.ulcerans_Agy99 ------GGTPEVVSAQAKRRDSEVDRAMTAELRFPAGHSGRIEFSMWSSH MAV_2987|M.avium_104 ------GRSPEVVSAQAKLRGPKVDRAMTAELRFPAGHTGRVRCSMWSTR Mb1781|M.bovis_AF2122/97 ------GATPEVVSAQAKLRDPAVDRAMTAELKFPGGHTGGIRCSMRSSD Rv1752|M.tuberculosis_H37Rv ------GATPEVVSAQAKLRDPAVDRAMTAELKFPGGHTGGIRCSMRSSD MAB_2306c|M.abscessus_ATCC_199 --------DPAAVVAHGSLFPTGVDAEAGLLLRYDDGRTATLLCSLLHHT * : * . . ** . : * :. *: Mvan_3970|M.vanbaalenii_PYR-1 YS-FTLRLIGTRGEAFVHDFIKPHDDDRLTLHTEDGTTVERHGTRTSYTY Mflv_2611|M.gilvum_PYR-GCK FS-FTLRLIGSRGEAFVHNFIKPRDDDRLTVQTDDGTRVERFGTRASYTY MSMEG_4652|M.smegmatis_MC2_155 YS-FTITITGSDGEAVVHDFIRPNLDDRLTVMTGSGVRVEHLGTRPSYTY MMAR_2628|M.marinum_M LLNMSARVVGDRGELRVLNPVVPQLFHRLTVQSAIGRRVERFPRRASYAY MUL_3103|M.ulcerans_Agy99 LLNMSARVVGDRGELRVLNPVVPHLFHRLTVQSAIGRRVERFPRRASYVY MAV_2987|M.avium_104 LLQISARVVGEHGELRIVNPVLPQAFHRLTVRSRDGRRTERFERRASYAY Mb1781|M.bovis_AF2122/97 LLNVSARVVGDRGELRVLNPVVPQLFHRLPPLACVSARRFRCRSAARASG Rv1752|M.tuberculosis_H37Rv LLNVSARVVGDRGELRVLNPVVPQLFHRLPPLACVSARRFRCRSAARASG MAB_2306c|M.abscessus_ATCC_199 PG--QARIFGTEGWIDILPRFHHPREIVLHRKGAAPEPMVRPPVGGGYSH : * * : . * : Mvan_3970|M.vanbaalenii_PYR-1 QLEAFTDHVERGTPIP--LDTADAVANMALIDEAYRAAGMSPR------- Mflv_2611|M.gilvum_PYR-GCK QLEFFARHVLHGAPLP--LDTTDAVENMAVIDEIYRAAGLPVR------- MSMEG_4652|M.smegmatis_MC2_155 QLEAFAAHVRDGAPLP--FGVDDAVTNMAFVDKAYRAAGLAPR------- MMAR_2628|M.marinum_M QLDAFTGAILRGEAVK--TTPQDAVQNMTVIDAIYRAAGLPLRNPS---- MUL_3103|M.ulcerans_Agy99 QLDAFTGAILRGEAVK--TTPQDAVQNMTVIDAIYRAAGLPLRNPS---- MAV_2987|M.avium_104 QLDAFAAGVLRGEPVK--TSARDAVDNMTVIDAIYRAAGLPLRYPT---- Mb1781|M.bovis_AF2122/97 QDDAQG----RGREHE--RDPRDLSGRRAPIAQPELNMVAASGSAA---- Rv1752|M.tuberculosis_H37Rv QDDAQG----RGREHE--RDPRDLSGRRAPIAQPELNMVAASGSAA---- MAB_2306c|M.abscessus_ATCC_199 ELAEVTECLLNGRAQSSVMPLADTLAVQRVLNTACEQLGVDHTEDPADLD : * * :