For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
PEPATGAPRIVDLPRETLEAMRAGLPALVDRMVEAVIAEVPLLAQAAQESWRPVIDTSAQLLLGSLIDEL GTSTGPPTAVPMQEVLDIAHRFGRREARNGRPAEVQLAAYRVGARELWRDWSALAAQGGVDRDQVSAFAE MFFAYLDLISAAGVAGHAQEQSRSGLDRERRRERLVRMLLSDTASDELDLAAEYATWATPRTLTAVAMPT RQERGATAITSDPRTLRVPDDAVDSRIGMHVVLVCDVGGSARASFVASLAGTGAVVGPARSWTDAQSSVR RVLRAMRLRRPDGGDVLDTEEILPELVVGADADALADLRARALAPLADFPEASRDRLTETLRSWLLHQGR RDDIAADLFVSPSTIRYRLRQLRDAYGDRLRDPRTIAELTVALAMDVATLGGQTRPAIVGG*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. gilvum PYR-GCK | Mflv_0936 | - | - | 100% (412) | hypothetical protein Mflv_0936 |
M. gilvum PYR-GCK | Mflv_2780 | - | 3e-11 | 25.69% (288) | hypothetical protein Mflv_2780 |
M. gilvum PYR-GCK | Mflv_0801 | - | 1e-05 | 27.91% (258) | transcriptional regulator, CdaR |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb2266 | - | 3e-10 | 26.86% (283) | hypothetical protein Mb2266 |
M. tuberculosis H37Rv | Rv2242 | - | 3e-10 | 26.86% (283) | hypothetical protein Rv2242 |
M. leprae Br4923 | MLBr_01652 | - | 8e-09 | 26.15% (283) | hypothetical protein MLBr_01652 |
M. abscessus ATCC 19977 | MAB_0762 | - | 7e-13 | 24.69% (324) | hypothetical protein MAB_0762 |
M. marinum M | MMAR_3335 | - | 2e-08 | 36.94% (111) | hypothetical protein MMAR_3335 |
M. avium 104 | MAV_4933 | - | 2e-12 | 25.00% (364) | hypothetical protein MAV_4933 |
M. smegmatis MC2 155 | MSMEG_4324 | - | 3e-14 | 28.57% (273) | hypothetical protein MSMEG_4324 |
M. thermoresistible (build 8) | TH_1338 | - | 4e-11 | 25.98% (281) | CONSERVED HYPOTHETICAL PROTEIN |
M. ulcerans Agy99 | MUL_1307 | - | 1e-08 | 36.94% (111) | hypothetical protein MUL_1307 |
M. vanbaalenii PYR-1 | Mvan_3753 | - | 2e-11 | 28.83% (274) | hypothetical protein Mvan_3753 |
CLUSTAL 2.0.9 multiple sequence alignment MSMEG_4324|M.smegmatis_MC2_155 -------MPDNRFVPPK------STVEVLEAVPDSLLRRLKQYSGRLATE Mvan_3753|M.vanbaalenii_PYR-1 -------MTDNRFIPPR------STVEVLENVPESTLRRLKQYSGRLATQ TH_1338|M.thermoresistible__bu -------VPDNRFVPPQ------STLEVLESVPESVLRRLKQYSGRLATE Mb2266|M.bovis_AF2122/97 -------MNDNQLAPVAR---PRSPLELLDTVPDSLLRRLKQYSGRLATE Rv2242|M.tuberculosis_H37Rv -------MNDNQLAPVAR---PRSPLELLDTVPDSLLRRLKQYSGRLATE MMAR_3335|M.marinum_M -------MNDNQFSAIARLGSARSPLELLETVPDSLLRRLKQYSGRLATE MUL_1307|M.ulcerans_Agy99 -------MNNNQFSAIARLGSARSPLELLETVPDSLLRRLKQYSGRLATE MLBr_01652|M.leprae_Br4923 -------MNHNHFVPAP---PRRLPLELLDTVPDSLLRRLKQYSGRLATE Mflv_0936|M.gilvum_PYR-GCK -------MPEPATGAPRIVDLPRETLEAMRAGLPALVDRMVEAV--IAEV MAB_0762|M.abscessus_ATCC_1997 -----------------------------------MGEQLLARVDELCAE MAV_4933|M.avium_104 MKDFRAPVNGVDGDSASALVAVPKSQGAQTIRPDSVSRLVGALLDDHAAV : . MSMEG_4324|M.smegmatis_MC2_155 AVHAMEQRLPFFAELDASQRASVQLVVQTAVVNFVEWMRNPESNVGYTAQ Mvan_3753|M.vanbaalenii_PYR-1 AVHAMEERLPFFAELDASQRASVQLVVQTAVVNFAEWMRDPRSNVSYTAQ TH_1338|M.thermoresistible__bu AVHTMEERLPFFADLEASQRASVHLVVQTAVVNFVEWMRDPRSNVTYTMQ Mb2266|M.bovis_AF2122/97 AVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVGYTAQ Rv2242|M.tuberculosis_H37Rv AVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVGYTAQ MMAR_3335|M.marinum_M AVSAMQERLPFFADLEASQRASVALVVQTAVVNFAEWMQNPRSDVSYTAQ MUL_1307|M.ulcerans_Agy99 AVSAMQERLPFFADLEASQRASVALVVQTAVVNFAEWMQNPRSDVSYTAQ MLBr_01652|M.leprae_Br4923 AVTAMQERLPFFADLEASQRASVTLVVQTAVVNFVQWMQNPHSDVSYTAQ Mflv_0936|M.gilvum_PYR-GCK PLLAQAAQESWRPVIDTSAQLLLGSLIDELGTSTGPPTAVPMQEVLDIAH MAB_0762|M.abscessus_ATCC_1997 QCRIIRERVAAYRDPVLVTDEDLFAAGRDQMVYVLAAMGSGAPDTS-AAA MAV_4933|M.avium_104 VGRVRSVIRSRLPVYRSVADEALEAELEWVLRSAVGGREALHEPQIAGLA . : MSMEG_4324|M.smegmatis_MC2_155 AFEVVPQDLRRRVALRQSVEMVRTSMEFFEEAVPLLAR---SEEQLTALT Mvan_3753|M.vanbaalenii_PYR-1 AFEVVPQDLRRRIALRQSVEMVRVTMEFFEEVVPLLAR---SEDQLAAMT TH_1338|M.thermoresistible__bu AFEVVPQDLTRRIALRQTVEMVRTTMEFFEQVVPLLAR---SEEQVTALT Mb2266|M.bovis_AF2122/97 AFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLAR---SEEQLTALT Rv2242|M.tuberculosis_H37Rv AFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLAR---SEEQLTALT MMAR_3335|M.marinum_M AFELVPQDLTRRIALRHTVDMVRVTMEFFEEVVPLLAR---SEEQLTALT MUL_1307|M.ulcerans_Agy99 AFELVPQDLTRRIALRHTVDMVRVTMEFFEEVVPLLAR---SEEQLTALT MLBr_01652|M.leprae_Br4923 AFELVPQDLARRIALRHTVDMVRVTMEFFEEVVPLLAR---SEEQLTALT Mflv_0936|M.gilvum_PYR-GCK RFGRREARNGRPAEVQLAAYRVG-ARELWRDWSALAAQGGVDRDQVSAFA MAB_0762|M.abscessus_ATCC_1997 RVGRLRAEQGVPLADVMSAYRAG-GQFLWDALSQAIDAAGLSRQELRAAA MAV_4933|M.avium_104 AIGEARARDGVPVDDMLRAWRIG-VEVVVECAREAARRLGVDDARVLELV . . . . .: . MSMEG_4324|M.smegmatis_MC2_155 AGILRYSRDLAFAAASAYADQAEARGAWDIRMEANIVDAVVRGDTGPELQ Mvan_3753|M.vanbaalenii_PYR-1 AGILRYSRDLAFAAATAYADQAEARGAWDTRMEANLVDAVVRGGTRPELQ TH_1338|M.thermoresistible__bu AGILRYSRDLAFAAATAYADAAEARGAWDTRMEANVVDAVVRGAVGPELQ Mb2266|M.bovis_AF2122/97 VGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELL Rv2242|M.tuberculosis_H37Rv VGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELL MMAR_3335|M.marinum_M VGILKYSRDLAFTAASAYADAAEARGTWDSRMEASVVDAVVRGDTGPELL MUL_1307|M.ulcerans_Agy99 VGILKYSRDLAFTAASAYADAAEARGTWDSRMEASVVDAVVRGDTGPELL MLBr_01652|M.leprae_Br4923 VGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELL Mflv_0936|M.gilvum_PYR-GCK EMFFAYLDLISAAGVAGHAQEQSRSGLDRERRRERLVRMLLSDTASDELD MAB_0762|M.abscessus_ATCC_1997 SQAWQNHDRYTDAMAEGYRDVVVEQLIQRDQERAALVSGLIDGRFPAGIT MAV_4933|M.avium_104 QSALAWSDIAMATSAKAHRRTERALALEAEESDAEFVRGALMGSLPAAEL : . .: . .* : . MSMEG_4324|M.smegmatis_MC2_155 SQAAALNWDATAPATVIVGLPRADR--------IEMARDDVHAVVRRNDR Mvan_3753|M.vanbaalenii_PYR-1 SQAAALNWDATAPATVIVGMPRPDR--------AEFAGDDVHEVADRNGR TH_1338|M.thermoresistible__bu SQAAALNWDATAPATVVVGLPRPDR--------LEVVSQDVHHVANRHGR Mb2266|M.bovis_AF2122/97 SRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGR Rv2242|M.tuberculosis_H37Rv SRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGR MMAR_3335|M.marinum_M SRAAALNWDTTAPATVVVGTPASARDGSDG---SERAIQDVRDAAAQHGR MUL_1307|M.ulcerans_Agy99 SRAAALNWDTTAPATVVVGTPASARDGSDG---SERAIQDVRDAAAQHGR MLBr_01652|M.leprae_Br4923 SRAAALNWDTTAPATVVVGTPTPNHDGPNGQVSSERASQEVREIAARHGR Mflv_0936|M.gilvum_PYR-GCK LAAEYATWATPRTLTAVAMPTRQER---------GATAITSDPRTLRVPD MAB_0762|M.abscessus_ATCC_1997 AWNAAHQLGLPESGAFVVVAIESGP----------LDYRTLRSAEKALRD MAV_4933|M.avium_104 RMHAELRGLDPGAEYVAVRARLGGD------------GPHLRLEQSLGFQ . . . MSMEG_4324|M.smegmatis_MC2_155 AALSDVHGTWLVTIVSGPLSATDRFLADLMSVFADGPVVIGPTTPTLTAA Mvan_3753|M.vanbaalenii_PYR-1 TALSDVHGTWLVAIISGGLSPTDRFLSELMTVFADGPVVIGPTAPTLGAA TH_1338|M.thermoresistible__bu TALSDVHGTWLVTIVSGALSPTDRFLTDLLDVFADGPVVLGPTAPTLSAA Mb2266|M.bovis_AF2122/97 AALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAA Rv2242|M.tuberculosis_H37Rv AALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAA MMAR_3335|M.marinum_M AALTDVHGTWLVAIVSGHLSPTDKVFKDLLEAFSDGPVVIGPTAPMLTAA MUL_1307|M.ulcerans_Agy99 AALTDVHGTWLVAIVSGHLSPTDKVFKDLLEAFSDGPVVIGPTAPMLTAA MLBr_01652|M.leprae_Br4923 AALTDVHGTWLVAIISGQLAPTDKFFSDLLHAFSDGPVVIGPTAPMLTAA Mflv_0936|M.gilvum_PYR-GCK DAVDSRIGMHVVLVCDVGGSARASFVASLAGTG----AVVGP-ARSWTDA MAB_0762|M.abscessus_ATCC_1997 QGFASAWRVDPDMQVGIVALPTPSRLEELGETLRNLGVRRIGVSPVYDGY MAV_4933|M.avium_104 DPAHSRRGLCALLDGDLAG--------FLIEPPRDVEGVVGFGPPRPLTR . . * . MSMEG_4324|M.smegmatis_MC2_155 HRSATEAISGMNAVAGWPSAPRPVSARELLPERALLGDADAVTALETEVM Mvan_3753|M.vanbaalenii_PYR-1 HRSATEAIAGMNAVAGWAGAPRPVSARELLPERALLGDATAGAALEAEVM TH_1338|M.thermoresistible__bu YRSATEAIAGMNAVAGWSGAPRPVPARELLPERALLGDQTAIAALESEVM Mb2266|M.bovis_AF2122/97 HRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVM Rv2242|M.tuberculosis_H37Rv HRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVM MMAR_3335|M.marinum_M YHSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVM MUL_1307|M.ulcerans_Agy99 YHSASEAISGMNAVAGWRGASRPVLARELLPERALMGDASAIVALHTDVM MLBr_01652|M.leprae_Br4923 YHSASEAVSGMNAVAGWSGAPRPVQARELLPERALMGDASAIVALHTDVM Mflv_0936|M.gilvum_PYR-GCK QSSVRRVLRAMRLRR--PDGGDVLDTEEILPELVVGADADALADLRARAL MAB_0762|M.abscessus_ATCC_1997 PPPGPPLNYAKAALLAATEDDPVVAFDANPYAVAAITDPQTMARYRDLVL MAV_4933|M.avium_104 LSESYRMAARALVTAEACGLRGAYDIAALGLRTAVAIDADVGELLRKRYL . * . . : MSMEG_4324|M.smegmatis_MC2_155 RPLADAGPA----LTETLDAFLDSGGAIEACARKLFVHPNTVRYRLRRIA Mvan_3753|M.vanbaalenii_PYR-1 RPLSDAGPA----LMETLDAYLDSGGAIEACARKLFVHPNTVRYRLKRIA TH_1338|M.thermoresistible__bu RPLADAGPT----LTETLDAFLESGGAIEACARRLFVHPNTVRYRLRRIA Mb2266|M.bovis_AF2122/97 RPLADAGPT----LIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRIT Rv2242|M.tuberculosis_H37Rv RPLADAGPT----LIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRIT MMAR_3335|M.marinum_M RPLADAGPT----LIETLDAYLDCGGAIEACARKLFVHPNTIRYRLKRIT MUL_1307|M.ulcerans_Agy99 RPLADAGPT----LIETLDAYLDCGGAIEACARKLFVHPNTIRYRLKRIT MLBr_01652|M.leprae_Br4923 LPLADAGPT----LIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRIT Mflv_0936|M.gilvum_PYR-GCK APLADFPEASRDRLTETLRSWLLHQGRRDDIAADLFVSPSTIRYRLRQLR MAB_0762|M.abscessus_ATCC_1997 GSLTEIGVVDRQLLVDTFRQWVDCDGSIPATARVLFCHPNTVRYRLRRLK MAV_4933|M.avium_104 EPLSVGGSSRE--LIATVRTYLACGMHVERTATRLFVHQNTVRYRLARFE .*: * *. :: * ** .*:**** :: MSMEG_4324|M.smegmatis_MC2_155 DFTGRDPAVPRDAYVLRVASTVGRLSKHAYRASTINSAVSVVPTIRPATS Mvan_3753|M.vanbaalenii_PYR-1 DFTGRDPTVPRDAYVLRVASSVGRLARQAHLSAAPAAASAQAIGVASVTS TH_1338|M.thermoresistible__bu EITGRDPAVPRDAYVLRVAVSVSRLTRQSYQSSTVNPDLGSTAGWRGQAA Mb2266|M.bovis_AF2122/97 DFTGRDPTQPRDAYVLRVAATVGQLNYPTPH------------------- Rv2242|M.tuberculosis_H37Rv DFTGRDPTQPRDAYVLRVAATVGQLNYPTPH------------------- MMAR_3335|M.marinum_M DFTGRDPTQPRDAYVLRVAATVGQLNYPTPPSGAANNTITPVPLPVRRGT MUL_1307|M.ulcerans_Agy99 DFTGRDPTQPRDAYVLRVAATVGQLNYPTPPSGAANNTITPVPLPVRRGT MLBr_01652|M.leprae_Br4923 DFTGHDPTLPRDAYVLRVAATVGKLNYPTHH------------------- Mflv_0936|M.gilvum_PYR-GCK DAYGDRLRDPRTIAELTVALAMDVATLGGQTRPAIVGG------------ MAB_0762|M.abscessus_ATCC_1997 QLTGRDVARPRDIAELHLAVEADRRLSWA--------------------- MAV_4933|M.avium_104 ELTGASLRDTEVVTEVWWVLELAAMRL----------------------- : * .. : . MSMEG_4324|M.smegmatis_MC2_155 AGSRGT Mvan_3753|M.vanbaalenii_PYR-1 PENLGT TH_1338|M.thermoresistible__bu GGHRAM Mb2266|M.bovis_AF2122/97 ------ Rv2242|M.tuberculosis_H37Rv ------ MMAR_3335|M.marinum_M EGP--- MUL_1307|M.ulcerans_Agy99 EGP--- MLBr_01652|M.leprae_Br4923 ------ Mflv_0936|M.gilvum_PYR-GCK ------ MAB_0762|M.abscessus_ATCC_1997 ------ MAV_4933|M.avium_104 ------