For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
MTAPPHRRRNAEEDVVGARVSIGDFAVMTSLSRKALRHYHDIGILEPAHIDSHTGYRFYDTGQVDHAHII RRFRSLGMSIPDIKALLSADGAAARTEIITTHLTQMEVQLQHTRDTVSALRELLSPVSVPSHVEVHAKPA LAVWSVGATIEVSEIDDWFGRSLKTLRDAVTAAGSAALGHQPGGLYDRALFLESRGAATLFVPALHSADP PEGVRAEVLPPAEFAVLRHCGGHDGIDRSYGALGRYVNEHLISHQGPIREHYIGATPSTPTTFTATEICW PIFGATPPPQ
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. gilvum PYR-GCK | Mflv_0932 | - | - | 100% (290) | MerR family transcriptional regulator |
M. gilvum PYR-GCK | Mflv_3212 | - | 2e-06 | 32.43% (111) | MerR family transcriptional regulator |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3367 | - | 3e-05 | 24.56% (114) | MerR family transcriptional regulator |
M. tuberculosis H37Rv | Rv3334 | - | 3e-05 | 24.56% (114) | MerR family transcriptional regulator |
M. leprae Br4923 | - | - | - | - | - |
M. abscessus ATCC 19977 | MAB_4723c | - | 5e-05 | 27.78% (108) | MerR family transcriptional regulator |
M. marinum M | - | - | - | - | - |
M. avium 104 | MAV_1646 | - | 4e-08 | 31.78% (107) | transcriptional regulator, MerR family protein |
M. smegmatis MC2 155 | MSMEG_3274 | - | 9e-88 | 59.42% (276) | MerR-family protein transcriptional regulator |
M. thermoresistible (build 8) | - | - | - | - | - |
M. ulcerans Agy99 | - | - | - | - | - |
M. vanbaalenii PYR-1 | Mvan_3507 | - | 7e-45 | 36.47% (266) | MerR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment Mflv_0932|M.gilvum_PYR-GCK MTAPPHRRRNAEEDVVGA-RVSIGDFAVMTSLSRKALRHYHDIGILEPAH MSMEG_3274|M.smegmatis_MC2_155 ---------------MAG-RVSIGDFAVMTHLSRKALRHYHEMGVLVPAH Mvan_3507|M.vanbaalenii_PYR-1 MAAICDSAGVKREAVQASPKLTIGEFATVTHLSVRTLRRYHEGGLLEPAW Mb3367|M.bovis_AF2122/97 --------------------MKISEVAALTNTSTKTLRFYENSGLLPPP- Rv3334|M.tuberculosis_H37Rv --------------------MKISEVAALTNTSTKTLRFYENSGLLPPP- MAB_4723c|M.abscessus_ATCC_199 ---------MATDAEGVAVGWSTRELADLAGTSLRTVRHYHDVGLLGEP- MAV_1646|M.avium_104 ----------------MAEQLLIGDVTALTGIASGRIRHYEKIGLLHAD- :.: :: : :* *.. *:* Mflv_0932|M.gilvum_PYR-GCK IDSHTGYRFYDTGQVDHAHIIRRFRSLGMSIPDIKALLS-----ADGAAA MSMEG_3274|M.smegmatis_MC2_155 IDAHTGYRFYDTCQVDHARIIRRFRELDMPIPDIKALLA-----AGDGAT Mvan_3507|M.vanbaalenii_PYR-1 VDGYTGYRYYTPEQIPTAQVIHRLRQLDVPLADIESILT-----ADDPQH Mb3367|M.bovis_AF2122/97 ARTASGYRNYGPEIVDRLRFIHRGQAAGLALQEVRQILA-----IHD--- Rv3334|M.tuberculosis_H37Rv ARTASGYRNYGPEIVDRLRFIHRGQAAGLALQEVRQILA-----IHD--- MAB_4723c|M.abscessus_ATCC_199 ERRPNGYKSYGVAHLVRVLQIKRLTGLGLSLKQIAEMDE-----ADE--- MAV_1646|M.avium_104 -HLSNGYRVFDVEQVLDLLRIDLMRSLGVGINDIQRLLHGGHSTLADLLD .**: : : * .: : :: : Mflv_0932|M.gilvum_PYR-GCK RTEIITTHLTQ-MEVQLQHTRDTVSALRELLSPVSVPSHVEVHAKPALAV MSMEG_3274|M.smegmatis_MC2_155 RNEIIAAHLRR-MEEQLAQTRDAVTELRELLDPVRVPAHIEVRHQPATEV Mvan_3507|M.vanbaalenii_PYR-1 RAQVISDHLRR-LEAELDRTRAAVVSLHRLLNPEPADLEVQLLSVPARTV Mb3367|M.bovis_AF2122/97 RGEAPCAHVRQLLSTRIDEVRAQIAELIALEGHLQTLLDHASYGPPTEHD Rv3334|M.tuberculosis_H37Rv RGEAPCAHVRQLLSTRIDEVRAQIAELIALEGHLQTLLDHASYGPPTEHD MAB_4723c|M.abscessus_ATCC_199 -------NQQEALRALDAELAATIDRLQGVRDELAQIFSSEIAADLPREF MAV_1646|M.avium_104 EHRALLIQQRDRLDQLIRALDESCAQSRAAADGTDVSEHLLRQLATTHRD : : . . Mflv_0932|M.gilvum_PYR-GCK WSVGATIEVSEIDDWFGRSLKTLRDAVTAAGSAAL---GHQPGGLYDRAL MSMEG_3274|M.smegmatis_MC2_155 WAVSAEVHSSQIGAWFAASVDTLQRALSDSG-VRI---DGAMGGVYDREL Mvan_3507|M.vanbaalenii_PYR-1 AGISGHVRQEDSLTWYDSAMAELDAAFPPAE---H---TGPPGGRYDNEL Mb3367|M.bovis_AF2122/97 HSTVCWILESDLDEPTAIEVSDIHA------------------------- Rv3334|M.tuberculosis_H37Rv HSTVCWILESDLDEPTAIEVSDIHA------------------------- MAB_4723c|M.abscessus_ATCC_199 GAAAVDMNFSETDRSLAFVMSRVLG---------------PAGLQAFVGM MAV_1646|M.avium_104 SIGVIGRLSAPLPAPVAAMYADLFDEWDLPVPALFGQMRLPSAASTLLAQ : Mflv_0932|M.gilvum_PYR-GCK FLESRGAATLFVPALHSADPPEGVRAEVLPPAEFAVLRHCGGHDG----- MSMEG_3274|M.smegmatis_MC2_155 FAGESGVATLYVPVPHTVPVPPTVQAQTVPAQELAVLVHPGSQAG----- Mvan_3507|M.vanbaalenii_PYR-1 FTHGAGAFAVFRPVRNPKPAG-RIRVLELPQADLAVTVHTGRHDD----- Mb3367|M.bovis_AF2122/97 -------------------------------------------------- Rv3334|M.tuberculosis_H37Rv -------------------------------------------------- MAB_4723c|M.abscessus_ATCC_199 FLDQQDRALDHELENLPADAGERTRADLAERMSLHAKRLYADHPG----- MAV_1646|M.avium_104 LAETPGRQVLFDRLRRLAADVIALGESVSAATELAHNWIEQQLADPLPDD Mflv_0932|M.gilvum_PYR-GCK IDRSYGALGRYVNEHLISHQGPIREHY-IGATPSTPTTFTATEICWP--- MSMEG_3274|M.smegmatis_MC2_155 IDRSYGELGAYVYDHLISHQGPIRERY-VGAPASNIVAFTATEIGWP--- Mvan_3507|M.vanbaalenii_PYR-1 IDVTYGRLGSWVVTHALAVDGPIHETYSVGPRDTTDPAEWRTEIGWP--- Mb3367|M.bovis_AF2122/97 -------------------------------------------------- Rv3334|M.tuberculosis_H37Rv -------------------------------------------------- MAB_4723c|M.abscessus_ATCC_199 MLN----------STADAPRGQRFAESTVARALLDLFNPAQLDVLIR--- MAV_1646|M.avium_104 VVTVLRGVQPLLGQDPVIVQGFRAWAGSISPAAARFIEEIARQTARRGLA Mflv_0932|M.gilvum_PYR-GCK ------IFGATP--PPQ--- MSMEG_3274|M.smegmatis_MC2_155 ------ILATSPSQPPVP-- Mvan_3507|M.vanbaalenii_PYR-1 ------VFRLAAGEPSAQK- Mb3367|M.bovis_AF2122/97 -------------------- Rv3334|M.tuberculosis_H37Rv -------------------- MAB_4723c|M.abscessus_ATCC_199 ------VGAAVRSEPGEG-- MAV_1646|M.avium_104 AVSVIVLPAADRAQTADATP