For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
ATQEEHRAELGAFLRASRERLNRAEFGLPPAGRNRTVGLRREEVSYLSGVSVTWYTWLEQGRDINPSRQV LDAVSRTLRLSAAQHRYVLTLAGFAPVSAAPADDVTDVPGHVQRLLDAIGDNPAYALTPEWGIAGWNAAY QRLYPNVATTPPAERNLLWAVFTDPFVRDLLDDWPVTSQRFLAEFRAEIGPRLGNPTLLGLIERLSEASD EFRAGWERHDIRGFESRERVFHHPEFGVVTYEHHQLRPSDQPELQLVVYTPTHRNP*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. smegmatis MC2 155 | MSMEG_1289 | - | - | 100% (267) | hypothetical protein MSMEG_1289 |
| M. smegmatis MC2 155 | MSMEG_0260 | - | 8e-40 | 37.70% (252) | DNA-binding protein |
| M. smegmatis MC2 155 | MSMEG_0523 | - | 7e-33 | 33.58% (265) | DNA-binding protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_5170 | - | 6e-82 | 55.00% (260) | XRE family transcriptional regulator |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_4641 | - | 3e-90 | 57.25% (262) | putative DNA-binding protein |
| M. marinum M | MMAR_3947 | - | 5e-13 | 29.47% (207) | transcriptional regulatory protein |
| M. avium 104 | - | - | - | - | - |
| M. thermoresistible (build 8) | TH_1958 | - | 4e-05 | 32.48% (117) | transcriptional regulator, XRE family protein |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_1162 | - | 3e-81 | 55.64% (257) | XRE family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
MSMEG_1289|M.smegmatis_MC2_155 MATQEEHRAELGAFLRASRERLNRAEFGLPPAGRNRTVGLRREEVSYLSG
MAB_4641|M.abscessus_ATCC_1997 MAGTDERRRELGAFLRVRREHLVRADYGLPPVGRSRTTGLRREEIAYLSG
Mflv_5170|M.gilvum_PYR-GCK MDTRAQRRLALGEFLRARREAIRRADVGLPELPRARTGGLRREEVAVTAG
Mvan_1162|M.vanbaalenii_PYR-1 MDRRAQQRLALGEFLRARRRAAVRAELGLPDMPRSRTSGLRREEVAVQAG
MMAR_3947|M.marinum_M MPNR-------GGFVHAAR----------------ERAGLTCRELAEKAG
TH_1958|M.thermoresistible__bu VESRP------ASGHDAEVTRTAAPAFGAMLRDWRRRRRLSQLDLALEAG
: . . . * ::: :*
MSMEG_1289|M.smegmatis_MC2_155 VSVTWYTWLEQGRDINPSRQVLDAVSRTLRLSAAQHRYVLTLAGFAPVSA
MAB_4641|M.abscessus_ATCC_1997 VSVTWYTWLEQGRDINPSRQVLEAIALEMRLSAAERTYLLELAGFAPLPH
Mflv_5170|M.gilvum_PYR-GCK VSVTWYTWLEQGRDINPSKQVLDAVADALRLSPAEHEYVLALGGYA-VDA
Mvan_1162|M.vanbaalenii_PYR-1 VSVTWYTWLEQGRDINPSRQVLDAIARALRLSPSEHDYVLALGGYT-VDH
MMAR_3947|M.marinum_M CSLRYVHDIEQG--CSPSIRVLNGLVRALQLSAWEQRFLFAACGRILPDP
TH_1958|M.thermoresistible__bu VSARHVSFMETGR-AAPSRTMVLRLAEVLEVPPREQNGLLVAAGYAPVYA
* :* * ** :: : :.:.. :: :: *
MSMEG_1289|M.smegmatis_MC2_155 APADD---VTDVPGHVQRLLDAIGDNPAYALTPEWGIAGWNAAYQRLYPN
MAB_4641|M.abscessus_ATCC_1997 SATPD---PAPVPDHLLRLVENLVPSPAFVVSADWSIGGWNRAYELLYPG
Mflv_5170|M.gilvum_PYR-GCK AVS-----RGPLPPHIQHFLDALEGYPAFAITPDWGIAAWNTTYAALYPN
Mvan_1162|M.vanbaalenii_PYR-1 AVT-----AGPPPPQIQRFLDALGGHPAFAITSDWGIAAWNTAYAALYPN
MMAR_3947|M.marinum_M ALT--------DTDISQRYLDALQPHPAAALHPSWRFKAWNQQWQRLFQG
TH_1958|M.thermoresistible__bu ERDLDDPEMAAVRHGVQRVLDAHDPYPCVAVDRGWRVVQTNAGAAVLLDG
: :: *. .: * . * * .
MSMEG_1289|M.smegmatis_MC2_155 VATTPPAERNLLWAVFTDPFVRDLLDDWPVTSQRFLAEFRAEIGPRLGNP
MAB_4641|M.abscessus_ATCC_1997 IASIVPADRNLLRFIFTDPYVRQMLPDWPITSRRFLAEYRAEAGALLGDP
Mflv_5170|M.gilvum_PYR-GCK VERVPETDRNLLWLVFTDPYIHELLPNWDTDSRRFLAEFRADAGPRVGEP
Mvan_1162|M.vanbaalenii_PYR-1 IERVPPPDRNLLWLVFMDPAIRELLPDWDADSRRFLAEFRADAGPMVGEP
MMAR_3947|M.marinum_M VLLAP----SMHQWLYLSTTSRRILRNWDEVSQWCVGWLR--YGLAVDVD
TH_1958|M.thermoresistible__bu VADHLLEQPNALRIALHPDGLAPRIRNLAQWRHHLISRLRREVALSR-AP
: . : : : :. * .
MSMEG_1289|M.smegmatis_MC2_155 TLLGLIERLSEASDEFRAGWERH----DIRGFESRERVFHHP--------
MAB_4641|M.abscessus_ATCC_1997 RHRALVDRLQQQSPEFARAWAEH----EVGRFTSRERRFHHP--------
Mflv_5170|M.gilvum_PYR-GCK SYTALVSRLSSESPHFAAAWQAT----SIERFTSRERLFRHP--------
Mvan_1162|M.vanbaalenii_PYR-1 SYTALVSRLSSESPHFATAWRAA----DIERFTSRERLFRHP--------
MMAR_3947|M.marinum_M AVKPMVSALMPVT-EFRREWEAQ----VIPVDPATRLWVVRD--------
TH_1958|M.thermoresistible__bu GAVALLAEIESYPGGFDDPGDLGGVVVPLELYTTSRRLLSFLSTVTTFGT
:: : . * : : . .
MSMEG_1289|M.smegmatis_MC2_155 --EFGVVTYEHHQLRPSDQPELQLVVYTPTHRNP----------------
MAB_4641|M.abscessus_ATCC_1997 --EAGELIFEHHRLSPSDLPDLHIVIYLPLDGTNTRTKLEALLSGGR---
Mflv_5170|M.gilvum_PYR-GCK --AAGELRLEHHQVAPVDVPDIQIVAYLPVPDSVASERLRMLTGQA-DTA
Mvan_1162|M.vanbaalenii_PYR-1 --VVGELRLEHHQVAPVDVPDIQIVAYLPEPGSVAAERLRRLVGQAGDTA
MMAR_3947|M.marinum_M --GGTELRIDMRFWHASPMPGGLLLGVILDAG------------------
TH_1958|M.thermoresistible__bu ALDLTAAELSIEAFLPADERTASALAGPTSPAAASFPDPDTGTAAARQP-
. . . :
MSMEG_1289|M.smegmatis_MC2_155 -
MAB_4641|M.abscessus_ATCC_1997 -
Mflv_5170|M.gilvum_PYR-GCK R
Mvan_1162|M.vanbaalenii_PYR-1 R
MMAR_3947|M.marinum_M -
TH_1958|M.thermoresistible__bu -