For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
SETSEPATPPPAVATAAPPPPPPVEKVPALYRVAAWVVIVAGITFIASTLFFAGALVFGHGACHHHRHHH HGMFKPGGSGGPGGPGGPGGPGGMFFLPGPPPPGMGPGMGPGMGPGMSPGPHGGATGPVQTPSAPAPSTP PARP*
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. marinum M | MMAR_5218 | - | - | 100% (145) | hypothetical protein MMAR_5218 |
| M. marinum M | MMAR_5219 | - | 9e-21 | 44.17% (120) | hypothetical protein MMAR_5219 |
| M. marinum M | MMAR_2795 | - | 7e-11 | 47.06% (68) | PE-PGRS family protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3732c | - | 5e-40 | 53.79% (145) | proline rich protein |
| M. gilvum PYR-GCK | Mflv_1307 | - | 6e-16 | 41.26% (143) | hypothetical protein Mflv_1307 |
| M. tuberculosis H37Rv | Rv3706c | - | 2e-16 | 42.34% (111) | proline rich protein |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | MAB_2532 | - | 2e-08 | 56.36% (55) | hypothetical protein MAB_2532 |
| M. avium 104 | MAV_0397 | - | 2e-37 | 49.14% (175) | hypothetical protein MAV_0397 |
| M. smegmatis MC2 155 | MSMEG_6254 | - | 1e-16 | 38.82% (152) | hypothetical protein MSMEG_6254 |
| M. thermoresistible (build 8) | TH_3578 | - | 4e-12 | 31.33% (150) | PUTATIVE - |
| M. ulcerans Agy99 | MUL_4292 | - | 6e-70 | 96.69% (121) | hypothetical protein MUL_4292 |
| M. vanbaalenii PYR-1 | Mvan_5408 | - | 9e-21 | 45.62% (160) | hypothetical protein Mvan_5408 |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_5218|M.marinum_M MSET----SEPATPPPAV----------------ATAAPPPPPPVEKV--
MUL_4292|M.ulcerans_Agy99 --------------------------------------------MEKV--
MAV_0397|M.avium_104 MSQTPEPQAEPTTPEPTP----------------AAAVPPPPPPPERVKP
Mb3732c|M.bovis_AF2122/97 MTETP----QPAAPPPSA----------------ATTSPPPSPQQEKP--
MSMEG_6254|M.smegmatis_MC2_155 MSETPSDHPTTPVGTPAETPTATSGPVAPPPVAPPPAAVPVAPAEAPRRH
TH_3578|M.thermoresistible__bu MTDAPEPRPTEPQAPPAQ-----------------PAAAPPAVSNAPR-S
Rv3706c|M.tuberculosis_H37Rv MRHMSETS-ETPTPPPHQ-------------------------------T
Mflv_1307|M.gilvum_PYR-GCK MSDVTSHQ-SDPATTPVP----------------APPSATAPPVVVPQES
Mvan_5408|M.vanbaalenii_PYR-1 MTETPESRTEPTAVATEQ------------------GRGELSPGSDRP--
MAB_2532|M.abscessus_ATCC_1997 --------------------------------------------------
MMAR_5218|M.marinum_M PALYRVAAWVVIVAGITFIASTLFFAGALVFGHGACHH---HRHHHHG--
MUL_4292|M.ulcerans_Agy99 PALYRVAAWVVIVAGITFIASTLFFAGALVFGHGACHH---HRHHHHG--
MAV_0397|M.avium_104 PRLYTAAAWVVIVAGIVFIISSVFFVGAFIWKH--SYY---HCHHHHG--
Mb3732c|M.bovis_AF2122/97 PRLYRAAAWVVIVAGIVFTVAVIFFSGALVLGQGKCPY---HRYYHHG--
MSMEG_6254|M.smegmatis_MC2_155 SRVVQAAAWVGIVAGVVFIVAVVFGTG-FVLGKNSG-----PGHHHRGHD
TH_3578|M.thermoresistible__bu SRLPQVAAWIAIVAGVLVIMAVIFFAG-FFLGRVSDGF---GGHHHR---
Rv3706c|M.tuberculosis_H37Rv PKVFKAAAWVAIAAGTVFIVAVIFFTG-YILGKHAG-H---GGFHHR---
Mflv_1307|M.gilvum_PYR-GCK NRLNKAAAWVGIAAGAVFIVAVVFFAG-FLLGQNVDGG---GRAHHGG--
Mvan_5408|M.vanbaalenii_PYR-1 NRLTQSAAWVGIVAGVVFIVAVIFFSGFFVGKQYGGGYRDGRGMSYPGGM
MAB_2532|M.abscessus_ATCC_1997 -MHTKARTTVGVAVGSMALIASLIGCGTDAPPRSVGTTTQTPAPPPGG--
: : :..* : :: * :
MMAR_5218|M.marinum_M -----MFKPGGSG-----------GPGG---PGGPGGPGGMFFLPGPPPP
MUL_4292|M.ulcerans_Agy99 -----MFKPGGSG-----------GPGG---PGGPGR---MFFLPGPPPP
MAV_0397|M.avium_104 -----VFHPGGPGPGNGPWQYGGPGPGNGPWPGGPGGSGAWYGGPGGPDN
Mb3732c|M.bovis_AF2122/97 -----MFRPVGPV-----------APGP--------GMGWVFGFPGGPPP
MSMEG_6254|M.smegmatis_MC2_155 RPEIMMFHRGGPP--------------------------PMMPGMGPGHM
TH_3578|M.thermoresistible__bu ----MHWHDRMPS--------------------------RYFDHPGPGPR
Rv3706c|M.tuberculosis_H37Rv ------QHHQHPA--------------------------MMLR---PG--
Mflv_1307|M.gilvum_PYR-GCK ----PGMMQPGPA--------------------------GFPMGPPGGFH
Mvan_5408|M.vanbaalenii_PYR-1 MGPGGMMGPGGMMG-----------PGG---MMGPGGPGGMMGPGGPGGM
MAB_2532|M.abscessus_ATCC_1997 ----SGSVPGGPTGG----------------GGPEGGAGSIPGGPTGGG-
MMAR_5218|M.marinum_M G---MGPGMGPGMGPGMSPGPHG-----GATGPVQ-TPSAPAPSTPPARP
MUL_4292|M.ulcerans_Agy99 G---MGPGMGPGMGPGMSPGPHG-----GATGPVQ-TPSAPAPSTPPARP
MAV_0397|M.avium_104 GPWPGGPGLIVPMPPGGPGGPGGPVSGPGVSGPGQPSPVSPAPSTPAPRP
Mb3732c|M.bovis_AF2122/97 P----------GMGPGFPGGPGG-----PAVGPTG-----PGPTTAPARP
MSMEG_6254|M.smegmatis_MC2_155 R------PGGGMFGPG--GAPAERGEFRGPQAPD---RSETPT-TAPARP
TH_3578|M.thermoresistible__bu ------------FSP---SAPGTR-----PAPPT---EPAAPSPTATPRP
Rv3706c|M.tuberculosis_H37Rv -------------SPH--GGPAAVRPGPGPGGPGQ--VPSSVSPPATPAP
Mflv_1307|M.gilvum_PYR-GCK ------------HGPGF-AGPSGGGPGMDAPRPQS--PTTGNAPTPSPRP
Mvan_5408|M.vanbaalenii_PYR-1 MG-------PGSWGPGGMMGPGSWG--PGMMGPGQ-QPSPTTTPAVPTTP
MAB_2532|M.abscessus_ATCC_1997 -------------GPGGGGGEIPGGP-TGSGGPGG-GSGCIPNVGCVNVP
* . * *
MMAR_5218|M.marinum_M ------
MUL_4292|M.ulcerans_Agy99 YRRAAR
MAV_0397|M.avium_104 ------
Mb3732c|M.bovis_AF2122/97 ------
MSMEG_6254|M.smegmatis_MC2_155 ------
TH_3578|M.thermoresistible__bu ------
Rv3706c|M.tuberculosis_H37Rv ------
Mflv_1307|M.gilvum_PYR-GCK ------
Mvan_5408|M.vanbaalenii_PYR-1 QR----
MAB_2532|M.abscessus_ATCC_1997 ------