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M. avium 104 MAV_4359 (-)

annotation: RNA polymerase sigma factor SigD
coordinates: 4498765 - 4499343
length: 192

TIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLATITALPRY
RDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEADSVSRMSELLEILPAK
QREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSRLKSEMIAAGDCA*
Operon Prediction Model: Genebank

Paralogs
speciesidgenee-valueidentity (len)annotation
M. avium 104MAV_4359--100% (192)RNA polymerase sigma factor SigD
M. avium 104MAV_2488-9e-0836.76% (68) RNA polymerase sigma factor, sigma-70 family protein
M. avium 104MAV_1129-4e-0629.55% (176) sigma factor

Closest Orthologs (e-value cutoff: 1e-4)
speciesidgenee-valueidentity (len)annotation
M. bovis AF2122 / 97Mb3448csigD5e-9290.37% (187) RNA polymerase sigma factor SigD
M. gilvum PYR-GCKMflv_4912-1e-7877.78% (189) RNA polymerase sigma factor SigD
M. tuberculosis H37RvRv3414csigD5e-9290.37% (187) RNA polymerase sigma factor SigD
M. leprae Br4923MLBr_01448-1e-0628.89% (135) RNA polymerase sigma factor SigC
M. abscessus ATCC 19977MAB_3724c-3e-7073.08% (182) RNA polymerase sigma factor SigD
M. marinum MMMAR_1134sigD9e-9290.62% (192) alternative RNA polymerase sigma-D factor, SigD
M. smegmatis MC2 155MSMEG_1599-3e-7776.22% (185) RNA polymerase sigma factor SigD
M. thermoresistible (build 8)TH_1681sigD8e-7175.14% (173) PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA-D FACTOR SIGD
M. ulcerans Agy99MUL_0897sigD6e-9290.62% (192) RNA polymerase sigma factor SigD
M. vanbaalenii PYR-1Mvan_1508-2e-8079.37% (189) RNA polymerase sigma factor SigD

CLUSTAL 2.0.9 multiple sequence alignment


Mb3448c|M.bovis_AF2122/97           MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLET
Rv3414c|M.tuberculosis_H37Rv        MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLET
MMAR_1134|M.marinum_M               ---------------MEISPSMTIEGERLDAVVAEAVAGDRNALREVLET
MUL_0897|M.ulcerans_Agy99           ---------------MEISPSMTIEGERLDAVVAEAVAGDRNALREVLET
MAV_4359|M.avium_104                ---------------MTIP-----AGERLDAVVAKAVTGDHNALREVLET
Mflv_4912|M.gilvum_PYR-GCK          ---------------------MTISGERLDAVVAEAVAGDRGALREVLET
Mvan_1508|M.vanbaalenii_PYR-1       ---------------------MTISGERLDAVVAEAVAGDRDALREVLET
MSMEG_1599|M.smegmatis_MC2_155      ---------------------MTSSGDRLDAVVAEAVAGDRDALREVLEI
TH_1681|M.thermoresistible__bu      ------------------------------------VAGDRDALRHVLET
MAB_3724c|M.abscessus_ATCC_199      ---------------------MTSTESGLDDVVAAAVRGDRDALSEVLSA
MLBr_01448|M.leprae_Br4923          -------------------MIASSGDEAVTDLALAAARGSKRALEAFIKA
                                                                        . *.: **  .:. 

Mb3448c|M.bovis_AF2122/97           IRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLA
Rv3414c|M.tuberculosis_H37Rv        IRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLA
MMAR_1134|M.marinum_M               IRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLA
MUL_0897|M.ulcerans_Agy99           IRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLA
MAV_4359|M.avium_104                IRPIVVRYCRARVGTVERGGLSADDVAQEVCLATITALPRYRDRGRPFLA
Mflv_4912|M.gilvum_PYR-GCK          IRPLVVRYCRARVGTAERSGLSADDVAQEVCLAAITALPRYRDQGRPFLA
Mvan_1508|M.vanbaalenii_PYR-1       IRPLVVRYCRARVGTAERSGLSADDVAQEVCLAAITALPRYKDQGRPFLA
MSMEG_1599|M.smegmatis_MC2_155      IRPIIVRYCRARIGATERSGLSADDVAQEVCLAAITALPRYRDQGRPFLA
TH_1681|M.thermoresistible__bu      IRPLVLRYCRARVGAGERSGLSADDVAQEVCLAAITALPRYKDQGRPFLA
MAB_3724c|M.abscessus_ATCC_199      IRPVVVRYCRARVGTAERSGLSADDVAQEVCLAVIAALPRYQDQGRPFLA
MLBr_01448|M.leprae_Br4923          TQQDVWRFVAYLSDVG-----NADDLTQETFLRAIGAIERFSGHS-SGRT
                                     :  : *:     ..      .***::**. * .* *: *: .:. .  :

Mb3448c|M.bovis_AF2122/97           FLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTR
Rv3414c|M.tuberculosis_H37Rv        FLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTR
MMAR_1134|M.marinum_M               FLYGIAAHKVADAHRAAGRDLAYPAESVPERRSADAGPEQLAIEADSVTR
MUL_0897|M.ulcerans_Agy99           FLYGIAAHKVADAHRAAGRDLAYPAESVPERRSADAGPEQLAIEADSVTR
MAV_4359|M.avium_104                FLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEADSVSR
Mflv_4912|M.gilvum_PYR-GCK          FVYGIAAHKVADAHRAAGRNRADPMDVVPERLSGEAGPEQMAIDSESSAR
Mvan_1508|M.vanbaalenii_PYR-1       FVYGIAAHKVADAHRAAGRNKADPMDVVPERFSGEAGPEQLAIDSESSAR
MSMEG_1599|M.smegmatis_MC2_155      FVYGIAAHKVADAHRAAARNRAEPTDVVPERFSLDAGPEQSAIDSESSAR
TH_1681|M.thermoresistible__bu      FVYGIAAHKVADAHRAAARNRAEPTDVLPERISTENGPEQMAIDAESSAR
MAB_3724c|M.abscessus_ATCC_199      FVYGIAAHKVADAHRAMARDKSDPAENLPEQVDRHAGPEQEALNSESSRR
MLBr_01448|M.leprae_Br4923          WLLAIARRVVADHIRRAQTRPRTTFDGYPERMLN---ADRHARGFEDLVE
                                    :: .** : ***  *        . :  *::      .:: *   :.  .

Mb3448c|M.bovis_AF2122/97           MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQR
Rv3414c|M.tuberculosis_H37Rv        MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQR
MMAR_1134|M.marinum_M               MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQR
MUL_0897|M.ulcerans_Agy99           MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQR
MAV_4359|M.avium_104                MSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSR
Mflv_4912|M.gilvum_PYR-GCK          MATLLKVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALSR
Mvan_1508|M.vanbaalenii_PYR-1       MAELLQILPEKQREILILRVVVGMSAEETADAVGSTAGAVRVAQHRALTR
MSMEG_1599|M.smegmatis_MC2_155      MAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALAR
TH_1681|M.thermoresistible__bu      MQKLLQVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALAR
MAB_3724c|M.abscessus_ATCC_199      MQALLEVLPEKQREILILRVVVGLSAEETADAVGSSAGAVRVAQHRALQK
MLBr_01448|M.leprae_Br4923          VTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDA
                                    :  ::  *. :*** *:*  ::*:.  ::* . *...*::*    **   

Mb3448c|M.bovis_AF2122/97           LKDEIVAAG---DYA-
Rv3414c|M.tuberculosis_H37Rv        LKDEIVAAG---DYA-
MMAR_1134|M.marinum_M               LKDEIVAAG---DYA-
MUL_0897|M.ulcerans_Agy99           LKDEIVAAG---DYA-
MAV_4359|M.avium_104                LKSEMIAAG---DCA-
Mflv_4912|M.gilvum_PYR-GCK          LKAEITSTGQGRDYA-
Mvan_1508|M.vanbaalenii_PYR-1       LKTEIMAAG--RDHA-
MSMEG_1599|M.smegmatis_MC2_155      LKTEIMATG--RDHA-
TH_1681|M.thermoresistible__bu      LKAEVMATG--HHHG-
MAB_3724c|M.abscessus_ATCC_199      LKAEMTRAG---DYRG
MLBr_01448|M.leprae_Br4923          LLADTEHNH----LTG
                                    *  :