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TIPAGERLDAVVAKAVTGDHNALREVLETIRPIVVRYCRARVGTVERGGLSADDVAQEVCLATITALPRY RDRGRPFLAFLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEADSVSRMSELLEILPAK QREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSRLKSEMIAAGDCA*
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. avium 104 | MAV_4359 | - | - | 100% (192) | RNA polymerase sigma factor SigD |
M. avium 104 | MAV_2488 | - | 9e-08 | 36.76% (68) | RNA polymerase sigma factor, sigma-70 family protein |
M. avium 104 | MAV_1129 | - | 4e-06 | 29.55% (176) | sigma factor |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb3448c | sigD | 5e-92 | 90.37% (187) | RNA polymerase sigma factor SigD |
M. gilvum PYR-GCK | Mflv_4912 | - | 1e-78 | 77.78% (189) | RNA polymerase sigma factor SigD |
M. tuberculosis H37Rv | Rv3414c | sigD | 5e-92 | 90.37% (187) | RNA polymerase sigma factor SigD |
M. leprae Br4923 | MLBr_01448 | - | 1e-06 | 28.89% (135) | RNA polymerase sigma factor SigC |
M. abscessus ATCC 19977 | MAB_3724c | - | 3e-70 | 73.08% (182) | RNA polymerase sigma factor SigD |
M. marinum M | MMAR_1134 | sigD | 9e-92 | 90.62% (192) | alternative RNA polymerase sigma-D factor, SigD |
M. smegmatis MC2 155 | MSMEG_1599 | - | 3e-77 | 76.22% (185) | RNA polymerase sigma factor SigD |
M. thermoresistible (build 8) | TH_1681 | sigD | 8e-71 | 75.14% (173) | PROBABLE ALTERNATIVE RNA POLYMERASE SIGMA-D FACTOR SIGD |
M. ulcerans Agy99 | MUL_0897 | sigD | 6e-92 | 90.62% (192) | RNA polymerase sigma factor SigD |
M. vanbaalenii PYR-1 | Mvan_1508 | - | 2e-80 | 79.37% (189) | RNA polymerase sigma factor SigD |
CLUSTAL 2.0.9 multiple sequence alignment Mb3448c|M.bovis_AF2122/97 MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLET Rv3414c|M.tuberculosis_H37Rv MVDPGVSPGCVRFVTLEISPSMTMQGERLDAVVAEAVAGDRNALREVLET MMAR_1134|M.marinum_M ---------------MEISPSMTIEGERLDAVVAEAVAGDRNALREVLET MUL_0897|M.ulcerans_Agy99 ---------------MEISPSMTIEGERLDAVVAEAVAGDRNALREVLET MAV_4359|M.avium_104 ---------------MTIP-----AGERLDAVVAKAVTGDHNALREVLET Mflv_4912|M.gilvum_PYR-GCK ---------------------MTISGERLDAVVAEAVAGDRGALREVLET Mvan_1508|M.vanbaalenii_PYR-1 ---------------------MTISGERLDAVVAEAVAGDRDALREVLET MSMEG_1599|M.smegmatis_MC2_155 ---------------------MTSSGDRLDAVVAEAVAGDRDALREVLEI TH_1681|M.thermoresistible__bu ------------------------------------VAGDRDALRHVLET MAB_3724c|M.abscessus_ATCC_199 ---------------------MTSTESGLDDVVAAAVRGDRDALSEVLSA MLBr_01448|M.leprae_Br4923 -------------------MIASSGDEAVTDLALAAARGSKRALEAFIKA . *.: ** .:. Mb3448c|M.bovis_AF2122/97 IRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLA Rv3414c|M.tuberculosis_H37Rv IRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLA MMAR_1134|M.marinum_M IRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLA MUL_0897|M.ulcerans_Agy99 IRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLA MAV_4359|M.avium_104 IRPIVVRYCRARVGTVERGGLSADDVAQEVCLATITALPRYRDRGRPFLA Mflv_4912|M.gilvum_PYR-GCK IRPLVVRYCRARVGTAERSGLSADDVAQEVCLAAITALPRYRDQGRPFLA Mvan_1508|M.vanbaalenii_PYR-1 IRPLVVRYCRARVGTAERSGLSADDVAQEVCLAAITALPRYKDQGRPFLA MSMEG_1599|M.smegmatis_MC2_155 IRPIIVRYCRARIGATERSGLSADDVAQEVCLAAITALPRYRDQGRPFLA TH_1681|M.thermoresistible__bu IRPLVLRYCRARVGAGERSGLSADDVAQEVCLAAITALPRYKDQGRPFLA MAB_3724c|M.abscessus_ATCC_199 IRPVVVRYCRARVGTAERSGLSADDVAQEVCLAVIAALPRYQDQGRPFLA MLBr_01448|M.leprae_Br4923 TQQDVWRFVAYLSDVG-----NADDLTQETFLRAIGAIERFSGHS-SGRT : : *: .. .***::**. * .* *: *: .:. . : Mb3448c|M.bovis_AF2122/97 FLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTR Rv3414c|M.tuberculosis_H37Rv FLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTR MMAR_1134|M.marinum_M FLYGIAAHKVADAHRAAGRDLAYPAESVPERRSADAGPEQLAIEADSVTR MUL_0897|M.ulcerans_Agy99 FLYGIAAHKVADAHRAAGRDLAYPAESVPERRSADAGPEQLAIEADSVTR MAV_4359|M.avium_104 FLYGIAAHKVADAHRAAGRDLAYPTESIPDRWSNDAGPEQLAIEADSVSR Mflv_4912|M.gilvum_PYR-GCK FVYGIAAHKVADAHRAAGRNRADPMDVVPERLSGEAGPEQMAIDSESSAR Mvan_1508|M.vanbaalenii_PYR-1 FVYGIAAHKVADAHRAAGRNKADPMDVVPERFSGEAGPEQLAIDSESSAR MSMEG_1599|M.smegmatis_MC2_155 FVYGIAAHKVADAHRAAARNRAEPTDVVPERFSLDAGPEQSAIDSESSAR TH_1681|M.thermoresistible__bu FVYGIAAHKVADAHRAAARNRAEPTDVLPERISTENGPEQMAIDAESSAR MAB_3724c|M.abscessus_ATCC_199 FVYGIAAHKVADAHRAMARDKSDPAENLPEQVDRHAGPEQEALNSESSRR MLBr_01448|M.leprae_Br4923 WLLAIARRVVADHIRRAQTRPRTTFDGYPERMLN---ADRHARGFEDLVE :: .** : *** * . : *:: .:: * :. . Mb3448c|M.bovis_AF2122/97 MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQR Rv3414c|M.tuberculosis_H37Rv MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQR MMAR_1134|M.marinum_M MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQR MUL_0897|M.ulcerans_Agy99 MNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQR MAV_4359|M.avium_104 MSELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALSR Mflv_4912|M.gilvum_PYR-GCK MATLLKVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALSR Mvan_1508|M.vanbaalenii_PYR-1 MAELLQILPEKQREILILRVVVGMSAEETADAVGSTAGAVRVAQHRALTR MSMEG_1599|M.smegmatis_MC2_155 MAKLLSVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALAR TH_1681|M.thermoresistible__bu MQKLLQVLPEKQREILILRVVVGMSAEETAEAVGSTAGAVRVAQHRALAR MAB_3724c|M.abscessus_ATCC_199 MQALLEVLPEKQREILILRVVVGLSAEETADAVGSSAGAVRVAQHRALQK MLBr_01448|M.leprae_Br4923 VTTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDA : :: *. :*** *:* ::*:. ::* . *...*::* ** Mb3448c|M.bovis_AF2122/97 LKDEIVAAG---DYA- Rv3414c|M.tuberculosis_H37Rv LKDEIVAAG---DYA- MMAR_1134|M.marinum_M LKDEIVAAG---DYA- MUL_0897|M.ulcerans_Agy99 LKDEIVAAG---DYA- MAV_4359|M.avium_104 LKSEMIAAG---DCA- Mflv_4912|M.gilvum_PYR-GCK LKAEITSTGQGRDYA- Mvan_1508|M.vanbaalenii_PYR-1 LKTEIMAAG--RDHA- MSMEG_1599|M.smegmatis_MC2_155 LKTEIMATG--RDHA- TH_1681|M.thermoresistible__bu LKAEVMATG--HHHG- MAB_3724c|M.abscessus_ATCC_199 LKAEMTRAG---DYRG MLBr_01448|M.leprae_Br4923 LLADTEHNH----LTG * :