For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VKLDDSGMPALAFLQMLDSEALGHDASIALRSIMVREHVTESMLVGRDAQVPLRWFREIYSDFDCDQGTR LGFAFAEHAKLTSFGALSVPLVSAGSVAEVVELLAYLPVITTALSPSFHSTERGLTIGLTGRTGDAGLNC LAVTYGGLALLRLLDMLAGAVPNIELHLSHSAPESWVLHDEVLAGRIFFDAPSSFVHVPAATLEEVCRFS DPVAYRIAVTDLQRTLDQRRDTSVSEKVRDLLEKDPGKTNISRTAGELSISPSTLKRRLREEGTTFRELR QSFLQERAILRILDRSVSVSEIAAELGYADLTNFTHAFKRWTGRSPRHFRKTRD
Operon Prediction Model: Genebank
Paralogs
species | id | gene | e-value | identity (len) | annotation |
M. abscessus ATCC 19977 | MAB_2050 | - | - | 100% (334) | putative HTH-type transcriptional regulator AraC |
M. abscessus ATCC 19977 | MAB_3997c | - | 4e-15 | 27.74% (274) | transcriptional regulatory protein |
M. abscessus ATCC 19977 | MAB_0715c | - | 1e-13 | 41.18% (85) | putative HTH-type transcriptional regulator AraC |
Closest Orthologs (e-value cutoff: 1e-4)
species | id | gene | e-value | identity (len) | annotation |
M. bovis AF2122 / 97 | Mb1430 | - | 5e-16 | 25.63% (277) | transcriptional regulatory protein |
M. gilvum PYR-GCK | Mflv_4594 | - | 1e-111 | 60.42% (336) | helix-turn-helix domain-containing protein |
M. tuberculosis H37Rv | Rv1395 | - | 6e-16 | 25.63% (277) | transcriptional regulatory protein |
M. leprae Br4923 | - | - | - | - | - |
M. marinum M | MMAR_3156 | - | 1e-117 | 65.66% (332) | AraC/XylS family transcriptional regulator |
M. avium 104 | - | - | - | - | - |
M. smegmatis MC2 155 | - | - | - | - | - |
M. thermoresistible (build 8) | TH_3718 | - | 5e-14 | 30.61% (147) | PUTATIVE putative aldehyde dehydrogenase |
M. ulcerans Agy99 | MUL_4350 | - | 3e-14 | 27.38% (325) | AraC/XylS family transcriptional regulator |
M. vanbaalenii PYR-1 | - | - | - | - | - |
CLUSTAL 2.0.9 multiple sequence alignment Mb1430|M.bovis_AF2122/97 --MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDP Rv1395|M.tuberculosis_H37Rv --MGHLPPPAEVRHPVYATRVLCEVANERGVPTADVLAGTAIEPADLDDP TH_3718|M.thermoresistible__bu ----------------VAAADLIDTAVEAGIPADRCLRGTWLTRSDLAAA Mflv_4594|M.gilvum_PYR-GCK MDWAQGARSVKFSNAGVPPVAFVQMLESQALDPDAVARLRTIMAREGTDE MMAR_3156|M.marinum_M ---------MNPNDAGVPPLAFVQMLESPAFDPDAVARLRNIMAREGTDE MAB_2050|M.abscessus_ATCC_1997 ---------MKLDDSGMPALAFLQMLDSEALGHDASIALRSIMVREHVTE MUL_4350|M.ulcerans_Agy99 ----------MSVVRGTGLSNYPNLVSELGGDPAALLRAAGVREQDVGNY : . . : : Mb1430|M.bovis_AF2122/97 DAVVG--ALDEITAVRRLLARLPDDAG--IGIDVGSRFALTHFGLFGFAV Rv1395|M.tuberculosis_H37Rv DAVVG--ALDEITAVRRLLARLPDDAG--IGIDVGSRFALTHFGLFGFAV TH_3718|M.thermoresistible__bu DRLIT--AEQELRIVRNVLAATEHPTA--LAGSAGARYQLPRAGFLGFAL Mflv_4594|M.gilvum_PYR-GCK ATLMQHDVQAPLRWFRDLYPDLDVDRATLLGFSFAGQAQLTSFGPLSVPL MMAR_3156|M.marinum_M ATLIQRDIQAPLRWFREAYPGLDIDQATLLGFALAEQAQLTSFGPLSVPL MAB_2050|M.abscessus_ATCC_1997 SMLVGRDAQVPLRWFREIYSDFDCDQGTRLGFAFAEHAKLTSFGALSVPL MUL_4350|M.ulcerans_Agy99 DAFIP-----VRAVIRAIETAAAATGTHDFGRQLAQRQGIEILGPVGVAA .: .* . :. . : : * .... Mb1430|M.bovis_AF2122/97 MSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRG Rv1395|M.tuberculosis_H37Rv MSCGTLRELLTIAMRYFALTTMHVDITLFETADDCLVELDASHLPADVRG TH_3718|M.thermoresistible__bu LSSNTLGDAIRVGIRFWRLTSVFERVTLEVNRQTTAIVLDDRDVPADVRQ Mflv_4594|M.gilvum_PYR-GCK VSAGSVAEIVEL-LTYLPLITTAINAQFRPNDQGLTVGLWGHTGDRALDC MMAR_3156|M.marinum_M VSAGSVAEIVEL-LTYLPLITTAVKAQFHPDDQGLTVGLWGHTSDRALDC MAB_2050|M.abscessus_ATCC_1997 VSAGSVAEVVEL-LAYLPVITTALSPSFHSTERGLTIGLTGRTGDAGLNC MUL_4350|M.ulcerans_Agy99 RTAATVADALMIFHTFMAAYSPAIHIEITPLARTQRSVVAIEIVPDDP-- :. :: : : : : : : : Mb1430|M.bovis_AF2122/97 FFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVH Rv1395|M.tuberculosis_H37Rv FFIERDIAGIIATTTSFALPLAAKYADQVSAELAVDAELLRPLLELVPVH TH_3718|M.thermoresistible__bu FLVERDAATMVGVTP--AL-LGGPLPDGVRMSLRRRPNGDAAVEELV--- Mflv_4594|M.gilvum_PYR-GCK LAVTYTGSALLRLLD---MLVSDALTVTLHLSWSAPVSLNKLAAEMVLAG MMAR_3156|M.marinum_M LAVTYAGLALLRLLD---MLVRAAPTLTLHLSWPAPAALKDREDDLT-AG MAB_2050|M.abscessus_ATCC_1997 LAVTYGGLALLRLLD---MLAGAVPNIELHLSHSAPESW--VLHDEVLAG MUL_4350|M.ulcerans_Agy99 IPCPHTLELALGVSLGVFRLLMGADYTPLAVHLPHDPLTPPTTYVRYFEC : : : Mb1430|M.bovis_AF2122/97 DVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI Rv1395|M.tuberculosis_H37Rv DVAFGRAHNRVHFPRAMFDEPLPQADRHTLEMCIAQCDVLMQRNERRRGI TH_3718|M.thermoresistible__bu DVSYGADRNAITFPTALLDRPLAAANPAVAAQCIAQCDELLARHQDEPTV Mflv_4594|M.gilvum_PYR-GCK RLFFDAPMSYLHVPVNALNEVCRFSDPLAYRLAVAELRRTLDEQSGATSF MMAR_3156|M.marinum_M RLFFDAPMSFLHVPADTLNEVCRFSDPVAYRLAIVDLQRTLDQRSETTSF MAB_2050|M.abscessus_ATCC_1997 RIFFDAPSSFVHVPAATLEEVCRFSDPVAYRIAVTDLQRTLDQRR-DTSV MUL_4350|M.ulcerans_Agy99 TPHFAERRSGFTVRSTDLVRPLHRDELAHRAVVDYLSSITPLGAGIVESV : . . . : . : . Mb1430|M.bovis_AF2122/97 TALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEA Rv1395|M.tuberculosis_H37Rv TALVRSKLFRDSGLFPTFTDVAGELDMHPRTLRRRLAEEGTSFRALLGEA TH_3718|M.thermoresistible__bu ASRVRRRLARDPGAVPLMRTLATEMGFTERTLRRRLAREGTGYRSLIDEV Mflv_4594|M.gilvum_PYR-GCK SKKVRRLLDEDPGQR-SCQRVADELSVSTSTLKRRLAEEGTTFRELRQSC MMAR_3156|M.marinum_M SEKVRRLLQKEPGRR-SKHWFAHELSMSTSTLKRRLSEEETTFRELRQAF MAB_2050|M.abscessus_ATCC_1997 SEKVRDLLEKDPGKT-NISRTAGELSISPSTLKRRLREEGTTFRELRQSF MUL_4350|M.ulcerans_Agy99 RTMARQLLPTG---ATTLEVVAAQFHLHPKTLQRRLADESTTFAALIDEV .* * * :: . **:*** * * : * Mb1430|M.bovis_AF2122/97 RSTVAVDLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG Rv1395|M.tuberculosis_H37Rv RSTVAVDLLRNVGLTVQQVSTRLGYTEVSTFSHAFKRWYGVAPSEYSRRG TH_3718|M.thermoresistible__bu RGARAADLLS-GGATVKQVAQQLGYSEPAAFHHAFVRWHALPPARFRRAD Mflv_4594|M.gilvum_PYR-GCK LRESAMMLLITRSMSASQIATELGYGDLANFSHAFKRWTGRSPSEYRRSQ MMAR_3156|M.marinum_M LRERAMLQLLDRSLSVSEIATDLGYSDLANFSHAFKRWTGRSPSEFRLSP MAB_2050|M.abscessus_ATCC_1997 LQERAILRILDRSVSVSEIAAELGYADLTNFTHAFKRWTGRSPRHFRKTR MUL_4350|M.ulcerans_Agy99 RKETADRYLRTTAMSLSHLARELGYAEQSVLTRSCKRWFGIGPAAYRAKT * : . : ..:: *** : : : :: ** . * : Mb1430|M.bovis_AF2122/97 --------- Rv1395|M.tuberculosis_H37Rv --------- TH_3718|M.thermoresistible__bu VR------- Mflv_4594|M.gilvum_PYR-GCK R-------- MMAR_3156|M.marinum_M H-------- MAB_2050|M.abscessus_ATCC_1997 D-------- MUL_4350|M.ulcerans_Agy99 RVRATPRRR