For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VEEQPRGRRAEVLAAAIEVAGTMGIGGLTYRSVDAAANVPSGTTSNHFRTRDALLLGAILEIEKLRRAFW RALVTEINPTTVSDLVGIGTAYANGAVGAMSTRVRAYMALLMEGWSHPELREPLQRGRDAQIPRTLHLMC KVDPKTPQLHAEIFQDYLTGIIYQQLANPVADFNPRPGIEALLTALVTPPQTPRAAQR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. abscessus ATCC 19977 | MAB_0969 | - | - | 100% (198) | putative transcriptional regulator, TetR |
| M. abscessus ATCC 19977 | MAB_4710c | - | 3e-08 | 30.65% (124) | TetR family transcriptional regulator |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3093 | - | 1e-07 | 32.50% (120) | DeoR family transcriptional regulator |
| M. gilvum PYR-GCK | Mflv_3484 | - | 2e-09 | 34.03% (144) | TetR family transcriptional regulator |
| M. tuberculosis H37Rv | Rv3066 | - | 1e-07 | 32.50% (120) | DeoR family transcriptional regulator |
| M. leprae Br4923 | - | - | - | - | - |
| M. marinum M | MMAR_5226 | - | 1e-13 | 31.28% (179) | DeoR family transcriptional regulator |
| M. avium 104 | MAV_2985 | - | 2e-10 | 26.18% (191) | transcriptional regulator, TetR family protein |
| M. smegmatis MC2 155 | MSMEG_0656 | - | 6e-09 | 29.09% (165) | transcriptional regulator, TetR family protein |
| M. thermoresistible (build 8) | TH_4019 | - | 6e-06 | 38.18% (55) | PUTATIVE - |
| M. ulcerans Agy99 | MUL_4301 | - | 4e-14 | 31.28% (179) | DeoR family transcriptional regulator |
| M. vanbaalenii PYR-1 | Mvan_0313 | - | 1e-05 | 28.10% (121) | TetR family transcriptional regulator |
CLUSTAL 2.0.9 multiple sequence alignment
MMAR_5226|M.marinum_M ----------MPPNP-QRRAQILDAAIDILADVGVGGLTHRQVDDRAGLP
MUL_4301|M.ulcerans_Agy99 ----------MPPNP-QRRAQILDAAIDILADVGVGGLTHRQVDDRAGLP
Mb3093|M.bovis_AF2122/97 ---MTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVP
Rv3066|M.tuberculosis_H37Rv ---MTAGSDRRPRDPAGRRQAIVEAAERVIARQGLGGLSHRRVAAEANVP
MAV_2985|M.avium_104 ------MDKRRKPNPAERRRDLCDAAIRLLADDGAKGLSHLKVDRKAGVP
MSMEG_0656|M.smegmatis_MC2_155 ------MG--RKQNPEQRRRELCDAAIRLLADEGIKGLTHLKVDRTAGVP
Mflv_3484|M.gilvum_PYR-GCK ----MTTSPPRKRDGDQRRRELCDAGIQVLAEYGSRGLTHAQVDRCAKVP
TH_4019|M.thermoresistible__bu MVDAGETTDGRRARGQRRRAEIIDATLAVVERDGAAGVTHRAVAAEAGIP
MAB_0969|M.abscessus_ATCC_1997 ----------MEEQPRGRRAEVLAAAIEVAGTMGIGGLTYRSVDAAANVP
Mvan_0313|M.vanbaalenii_PYR-1 --------MSAEERHRNRRTRLIEAATELIGTRGVAAATVTAVCAESGVT
** : * : * . : * : :.
MMAR_5226|M.marinum_M AGTTSNYFRTRQALLEATASRTVDLHWQRVQVLRSAVGSLSRDGVKALMT
MUL_4301|M.ulcerans_Agy99 AGTTSNYFRTRQALLEATASRTVDLHWQRVQVLRSAVGSLSRDGVKALMT
Mb3093|M.bovis_AF2122/97 VGSTTYYFNDLDALREAALAHAANASADLLAQWRSDL-DKDRDLAATLAR
Rv3066|M.tuberculosis_H37Rv VGSTTYYFNDLDALREAALAHAANASADLLAQWRSDL-DKDRDLAATLAR
MAV_2985|M.avium_104 DGTTSFYFRTRSALLRAAAERLAELDLAELQEIADSS-GPGPSPSR-LSQ
MSMEG_0656|M.smegmatis_MC2_155 DGTTSFYFRTSSALLHAVAGRVAELDLQDLTAATEPP-APGENPAAGLAA
Mflv_3484|M.gilvum_PYR-GCK EGTASYYFRTRAALLRGVGDRVAEIDVANLRSLADRP-LDTNAPFAHLAE
TH_4019|M.thermoresistible__bu ASLTAYYFATLDDLLVAALSSVADGYTERIREIIERP----GDRLRGLAE
MAB_0969|M.abscessus_ATCC_1997 SGTTSNHFRTRDALLLGAILEIEKLRRAFWRALVTEINPTTVSDLVGIGT
Mvan_0313|M.vanbaalenii_PYR-1 SRYFYQHFSGRDALLRAVYQQLYATFQEVIVDAIPDAGEPPEVLAYAPIR
:* * ..
MMAR_5226|M.marinum_M KMLTDPDEQFRRNTLARFELFMEGTRRPELQP-------FLVELQRAAVK
MUL_4301|M.ulcerans_Agy99 KMLTDPDEQFRRNTLARFELFMEGTRRPELQP-------FLVELQRAAVK
Mb3093|M.bovis_AF2122/97 LTTVYLADQDRYRTLN--ELYMAAAHRPELQRLARLWPDGLLALLEPRIG
Rv3066|M.tuberculosis_H37Rv LTTVYLADQDRYRTLN--ELYMAAAHRPELQRLARLWPDGLLALLEPRIG
MAV_2985|M.avium_104 VVAQAGADPQLYRTRARYELTLQATRDPALAAILQQATDAFTKLHREILV
MSMEG_0656|M.smegmatis_MC2_155 LVMRAADGPGFVRSRARLELAMPSSRDPGLAQVFALHQQRFVDMHRDVVQ
Mflv_3484|M.gilvum_PYR-GCK LTLMQSQGRGLMLNRARHELLLNAVRDPELSGPAQGLVSEVITLTRTAIA
TH_4019|M.thermoresistible__bu LIVES-AGPGRERALAERELSTLAARRPALQPVARRWRDNVAELASTLTD
MAB_0969|M.abscessus_ATCC_1997 AYANGAVGAMSTRVRAYMALLMEGWSHPELREP-------LQRGRDAQIP
Mvan_0313|M.vanbaalenii_PYR-1 RLVSMIDNDPRLGRILFVESATEPLLRELRSELMAGFTDLVLREARLHLD
.
MMAR_5226|M.marinum_M SATLIFEAAGFAPTPEQMDQLSRLLNGYVFSHLT-LPGDDDPAALVDRLL
MUL_4301|M.ulcerans_Agy99 SATLIFEAAGFAPTPEQMDQLIRLLNGYVFSHLT-LPGDDDPAALVDRLL
Mb3093|M.bovis_AF2122/97 RRAANAVTVFFDGATLHALITGTPLSTDELTDAI-ARLVADGPEQREVGQ
Rv3066|M.tuberculosis_H37Rv RRAANAVTVFFDGATLHALITGTPLSTDELTDAI-ARLVADGPEQREVGQ
MAV_2985|M.avium_104 QLMPHGAQLDPAVVEDLSNVTLTFINGLLQRLVH-GDRIVDSPEQLDGIL
MSMEG_0656|M.smegmatis_MC2_155 RLSPD---ADPAEVAERTYVLLTFISGLLLALSR-GDRTIGSAEQLEAII
Mflv_3484|M.gilvum_PYR-GCK RLQPDT--TDPDLLDAQASAVTTFIAGVFLRFVA-GDQTFNDPDKLSRQL
TH_4019|M.thermoresistible__bu ---------DPQAIAALVAASDGLCTAILIDNAP-ADVDFAHG-VLRRAL
MAB_0969|M.abscessus_ATCC_1997 RTLHLMCKVDPKTPQLHAEIFQDYLTGIIYQQLANPVADFNPRPGIEALL
Mvan_0313|M.vanbaalenii_PYR-1 IADSAVGVAHLASTLGVGGLFEVLRRRLDGELEFTTDELVQHCAGFLGSL
MMAR_5226|M.marinum_M PAYFDA---------------------------
MUL_4301|M.ulcerans_Agy99 PAYFDA---------------------------
Mb3093|M.bovis_AF2122/97 SAHAGRTPD------------------------
Rv3066|M.tuberculosis_H37Rv SAHAGRTPD------------------------
MAV_2985|M.avium_104 SAIATGILKSPDKGRLTRTGGQAAARRRADDSE
MSMEG_0656|M.smegmatis_MC2_155 CSLCRGGPQ-PEQG-------------------
Mflv_3484|M.gilvum_PYR-GCK QAIADAVAHDYGESN------------------
TH_4019|M.thermoresistible__bu GVPAEHQP-------------------------
MAB_0969|M.abscessus_ATCC_1997 TALVTPPQTPRAAQR------------------
Mvan_0313|M.vanbaalenii_PYR-1 GNYVLLQNTDQSATTEARPHR------------