For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VPSWTNPTEPREGLGADPWRAVVRPEGLLPRIDRVVLPGRGPLRDWVERIWSLSWAEPVPADFSGVIAHP TVHLTLEGGPPGEIRHGHRLPAGLLHGVVTERFAVDLPAPGWVVGLHLRPGAIFDLTGTEASTWTGRVVP WDQAWPGWDLTAVWEACDARARAEAIERAAQEMLGGRRPTADGHRARSVERLVRTDPSIASVADLAARAA LSQRSLQRLCRSHLGVSPRWLLRRARVIDAHQLLSETDLDVAEVASRLGWYDQAHLTRDYTKLTGTPPVR LRQERREGR
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. abscessus ATCC 19977 | MAB_0738 | - | - | 100% (289) | AraC family transcriptional regulator |
| M. abscessus ATCC 19977 | MAB_4712 | - | 9e-08 | 35.37% (82) | putative transcriptional regulator, AraC |
| M. abscessus ATCC 19977 | MAB_0557 | - | 4e-07 | 36.90% (84) | AraC family transcriptional regulator |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_2241 | - | 3e-26 | 33.56% (295) | helix-turn-helix domain-containing protein |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. marinum M | MMAR_1063 | - | 3e-08 | 26.70% (176) | transcriptional regulatory protein |
| M. avium 104 | MAV_0221 | - | 2e-08 | 26.13% (199) | transcriptional regulator, AraC family protein |
| M. smegmatis MC2 155 | MSMEG_5025 | - | 8e-28 | 35.17% (236) | putative transcriptional regulator |
| M. thermoresistible (build 8) | TH_1844 | - | 6e-30 | 34.29% (245) | putative transcriptional regulator |
| M. ulcerans Agy99 | MUL_0821 | - | 5e-08 | 27.84% (176) | transcriptional regulatory protein |
| M. vanbaalenii PYR-1 | Mvan_4454 | - | 5e-30 | 33.92% (286) | helix-turn-helix domain-containing protein |
CLUSTAL 2.0.9 multiple sequence alignment
Mflv_2241|M.gilvum_PYR-GCK --------MAAWKNTTA------GAPLRGVVGRPAGASAFDLRRWAADGR
Mvan_4454|M.vanbaalenii_PYR-1 --------MGAWKNATA------GEPLRGVVGRPASSSVFDLRRWAADGR
MSMEG_5025|M.smegmatis_MC2_155 --------MAAWKN----------APERGVVGRPGSASAFDLTRWAPSPE
TH_1844|M.thermoresistible__bu ------VTVGAWKNASPP-----VAPVRGVVGRAVDASVYDLYRWEPSAE
MMAR_1063|M.marinum_M ------MAQAARLIQHRS-----GVPIYGYRTDPDIPRVSVLRPGPEDLG
MUL_0821|M.ulcerans_Agy99 MDYLWRMAQAARLIQHRS-----GVPIYGYRTDPDIPRVSVRRPGPEDLG
MAB_0738|M.abscessus_ATCC_1997 --------MPSWTNPTEPREGLGADPWRAVVRPEGLLPRIDRVVLPGRGP
MAV_0221|M.avium_104 ---------------------------MYRPSPPLAEHIEYFGYWRGDEA
Mflv_2241|M.gilvum_PYR-GCK TSRYVEHYWSVNWDLRGNDPFDSTVITFPAMHITHEWGQDA-VRHGFSLP
Mvan_4454|M.vanbaalenii_PYR-1 TGRYVEHFWSVAWDLRGRDPFDTSVITFPAMHITREWGEDG-ARHGFPLP
MSMEG_5025|M.smegmatis_MC2_155 AGRFVEHYWSVRWDRREAGPHESTVITFPAVHLTREWGDDI-ARHGHPLP
TH_1844|M.thermoresistible__bu AAPFVEHFWAVSWDLRDRPPQPSTVISFPVMHLTHEWGEDG-VRHGFSLP
MMAR_1063|M.marinum_M DRARHIHDFPALWYVPAAG--LVYIAAAGQVLEPTQFGSLQ-GGVAMFFD
MUL_0821|M.ulcerans_Agy99 DRARHIHDFPALWYVPAAG--LVYIAAAGQVLEPTQFGSLQ-AGVAMFFD
MAB_0738|M.abscessus_ATCC_1997 LRDWVERIWSLSWA-EPVPADFSGVIAHPTVHLTLEGGPPGEIRHGHRLP
MAV_0221|M.avium_104 LGVHTSRALP--------RGAVTAIIDVGGRTDLGFYASDA--RTPLTVP
: . : . .
Mflv_2241|M.gilvum_PYR-GCK NTLVHGVVEQVFRTTISEKGCVVGARFRPGGFT--ARFGGDASVRTGCVE
Mvan_4454|M.vanbaalenii_PYR-1 NTLVHGVVEQVFRTTISERGWVVGARFRPGGFT--ARFGGDASTMTGRIQ
MSMEG_5025|M.smegmatis_MC2_155 NTLLHGVVTQVFRTTISSRGVVVGARFHPGGFT--ARFGRDAGELTDRVV
TH_1844|M.thermoresistible__bu ATLIHGVVPQVFRITLNERGAVAGARFRPGGFT--ARFGRDAASYTGRVV
MMAR_1063|M.marinum_M PAALGGDGGSPWPSWRTHPLLFPFLHGHSGGILRLEVPAARRSTWDGAIA
MUL_0821|M.ulcerans_Agy99 PAALGGDGGSPWPSWRTHPLLFPFLHGHSGGILRLEVPAARRSTWDGAIA
MAB_0738|M.abscessus_ATCC_1997 AGLLHGVVTERFAVDLPAPGWVVGLHLRPGAIF--DLTGTEASTWTGRVV
MAV_0221|M.avium_104 PAFAAGAGATAYVVRVAPAHTVMTIHFRPAGAL--AFLGSPLSDLEDALV
* : . : :... . . . :
Mflv_2241|M.gilvum_PYR-GCK PIGDL-----FGAAVALPDDVEDAAAELD----TLIGG-GGPPDAVFDAL
Mvan_4454|M.vanbaalenii_PYR-1 PVDDLSD--VFGGPVLVPDDVDAAAAEFD----RLIAH-GAEPDDTYRAL
MSMEG_5025|M.smegmatis_MC2_155 PVDDD----LFGGPIDLGCDVSVVRSGFD----AVIGDYSGDPDPVYARL
TH_1844|M.thermoresistible__bu RAEHELSG-ELSIGTIISDELTAVAEQLD----TVIGGHRGAPDTTYVAL
MMAR_1063|M.marinum_M AIEAELTARQQGYGQAVAAHLTLLLIELARLARDVVGDLRRSGEPLLAEV
MUL_0821|M.ulcerans_Agy99 AIEAELTTRQQGYGQAVTAHLTLLLIELARLARDVVGDLRRSGEPLLAEV
MAB_0738|M.abscessus_ATCC_1997 PWDQAWPG-WDLTAVWEACDARARAEAIERAAQEMLGGRRPTADG--HRA
MAV_0221|M.avium_104 GLEDLWGR-DAALLREQLIDAGSPPRRVALLQAFLVRRMRRNAVWPPARL
. . ::
Mflv_2241|M.gilvum_PYR-GCK SALVDRIRDDSGVHRVEQVMDLSPWSVRTTQRVFRRYVGVPVKWVLCRYR
Mvan_4454|M.vanbaalenii_PYR-1 AAVVDRIRDDSGIHRVEQVMSHSPWSVRTTQRVFRRYVGVPVKWVLCRYR
MSMEG_5025|M.smegmatis_MC2_155 MPLLERMREDPTLHRVEQVMEHSPWSVRTTQRVFRRYVGVPVKWVLCRYR
TH_1844|M.thermoresistible__bu TRLLDRIREDDRMHRVDQVMEHAPWSVRTTQRIFRRYVGVPVKWVLCRYR
MMAR_1063|M.marinum_M FEVIDRRHAEP--LSLRDVAAEVGMTPGHLTTIVRRRTGRTVQEWIIERR
MUL_0821|M.ulcerans_Agy99 FEVIDRRHAEP--LSLRDVAAEVGMTPGHLTTIVRRRTGRTVQEWIIERR
MAB_0738|M.abscessus_ATCC_1997 RSVERLVRTDPSIASVADLAARAALSQRSLQRLCRSHLGVSPRWLLRRAR
MAV_0221|M.avium_104 APVLRGADLDPS-MRVSKAQELSGLSRKRFAALFRCEVGLSPKAYLRVLR
: : : . : : * * . : : *
Mflv_2241|M.gilvum_PYR-GCK LQNAALEIETDPGVDFADLAVRLGWYDQAHFINDFRSMLGSTPGEYAATY
Mvan_4454|M.vanbaalenii_PYR-1 LQNAALEIETDPAVDFADLAVRLGWYDQAHFINDFRAMLGSTPGEYAATH
MSMEG_5025|M.smegmatis_MC2_155 LQQAALEIESTGSVDFADLAVRLGWYDQAHFINDFRGMLGCTPGEYAMRF
TH_1844|M.thermoresistible__bu LQQAALEIESSPDVDFADLAVRLGWYDQPHFINDFRAMLGCTPAQYADRY
MMAR_1063|M.marinum_M MAQAR-ELLVATDLAVGEVARRVGISDPGYFSRLFSRAHGTSPRQWRALP
MUL_0821|M.ulcerans_Agy99 MAQAR-ELLVATDLAVGEVARRVGISDPGYFSRLFSRAHGTSPRQWRALP
MAB_0738|M.abscessus_ATCC_1997 VIDAH-QLLSETDLDVAEVASRLGWYDQAHLTRDYTKLTGTPPVRLRQER
MAV_0221|M.avium_104 LQAALRALDTP--ARGATIAADLGYFDQAHFVREFRAFTGATPTQYARRR
: * : . :* :* * :: . : * .* .
Mflv_2241|M.gilvum_PYR-GCK GQGR-------
Mvan_4454|M.vanbaalenii_PYR-1 GRRP-------
MSMEG_5025|M.smegmatis_MC2_155 GQKGGGS----
TH_1844|M.thermoresistible__bu RSRT-------
MMAR_1063|M.marinum_M PRH--------
MUL_0821|M.ulcerans_Agy99 PRH--------
MAB_0738|M.abscessus_ATCC_1997 REGR-------
MAV_0221|M.avium_104 SSMPGHVELAR