For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_3544 | - | - | 100% (259) | ABC transporter related |
| M. thermoresistible (build 8) | TH_3537 | - | 4e-34 | 41.03% (234) | PUTATIVE oligopeptide/dipeptide ABC transporter, ATPase subunit |
| M. thermoresistible (build 8) | TH_4070 | - | 1e-31 | 41.99% (231) | PUTATIVE ABC transporter related |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | Mb3687c | dppD | 5e-42 | 45.83% (240) | peptide ABC transporter ATP-binding protein |
| M. gilvum PYR-GCK | Mflv_0116 | - | 3e-89 | 67.76% (245) | ABC transporter related |
| M. tuberculosis H37Rv | Rv3663c | dppD | 5e-42 | 45.83% (240) | peptide ABC transporter ATP-binding protein |
| M. leprae Br4923 | MLBr_01122 | - | 3e-37 | 42.74% (234) | putative ABC transport protein, ATP-binding component |
| M. abscessus ATCC 19977 | MAB_0429 | - | 1e-33 | 39.02% (246) | putative oligopeptide ABC transporter, ATP-binding protein |
| M. marinum M | MMAR_5151 | dppD | 1e-37 | 42.06% (252) | dipeptide-transport ATP-binding protein ABC transporter DppD |
| M. avium 104 | MAV_0467 | dppD | 2e-40 | 46.89% (209) | ABC transporter, ATP-binding protein DppD |
| M. smegmatis MC2 155 | MSMEG_0640 | - | 1e-35 | 41.49% (241) | oligopeptide transport ATP-binding protein OppD |
| M. ulcerans Agy99 | MUL_4237 | dppD | 1e-37 | 42.06% (252) | dipeptide-transport ATP-binding protein ABC transporter DppD |
| M. vanbaalenii PYR-1 | Mvan_0435 | - | 1e-36 | 40.25% (241) | oligopeptide/dipeptide ABC transporter, ATPase subunit |
CLUSTAL 2.0.9 multiple sequence alignment
MSMEG_0640|M.smegmatis_MC2_155 ---MS--ALLQVNDLRVSFTTDGG----VVRAVDGVSFDLKRGEILAVVG
Mvan_0435|M.vanbaalenii_PYR-1 ---MTREPLLRVDDLRVSFATEDG----VLQAVDGVSFDLTPGEVLAVVG
MLBr_01122|M.leprae_Br4923 ---MS--PLLEVTDLAVTFETNGE----PVTAVRGISYRINAGEVVAMVG
MAB_0429|M.abscessus_ATCC_1997 MEVPTSDSVVDITGLTVDFEVDKQ----WVPAVKGVSLSVAKGEVLAIVG
Mb3687c|M.bovis_AF2122/97 -MSVPAAPLLSVEGLEVTFGT-------DAPAVCGVDLAVRSGQTVAVVG
Rv3663c|M.tuberculosis_H37Rv -MSVPAAPLLSVEGLEVTFGT-------DAPAVCGVDLAVRSGQTVAVVG
MMAR_5151|M.marinum_M -MSTAAAPLLSVHGLQVRFGT-------DEPVVAGMDLSVYRGQTVAVVG
MUL_4237|M.ulcerans_Agy99 -MSTAAAPLLSVHGLQVRFGT-------DEPVVAGMDLSVYRGQTVAVVG
MAV_0467|M.avium_104 -MAGMTTPLLSVEGLHVGFG--------EHAAVRGLDLRVLPGQTVAVVG
TH_3544|M.thermoresistible__bu --VVNVPTAARLTDLTVDIATRPGRRAPVVRTLTGVDLRVRAGEVTALIG
Mflv_0116|M.gilvum_PYR-GCK -----MVSAARLTGLTVGIDLRRGRASAVVDVLDDVHLDIPAGRVTALVG
. : .* * : .: .: : *. *::*
MSMEG_0640|M.smegmatis_MC2_155 ESGSGKSVTAQTLIGLTRASNSAITGAIDFDGRDINSLDDGALREIRGEH
Mvan_0435|M.vanbaalenii_PYR-1 ESGCGKSVTAQTLTGLTRSPNTRISGSVTYRGRELTGLGDDALRDIRGEE
MLBr_01122|M.leprae_Br4923 ESGSGKSAAAMAVVGLLP-EYAQVRGSVRLHNTELVGLADKTMSRFRGKA
MAB_0429|M.abscessus_ATCC_1997 ESGSGKSTTAMAIPALLP-PSARVRGSVKLNGAELLGATNDELRAVRGKD
Mb3687c|M.bovis_AF2122/97 ESGSGKSTTAAAILGLLPAGGRITAGRVVFDGRDITGADAKRLRSIRGRE
Rv3663c|M.tuberculosis_H37Rv ESGSGKSTTAAAILGLLPAGGRITAGRVVFDGRDITGADAKRLRSIRGRE
MMAR_5151|M.marinum_M ESGSGKSTAAAAILGLLAPGGRITAGRIIFDGRDITSADRRVMRTIRGRE
MUL_4237|M.ulcerans_Agy99 ESGSGKSTAAAAILGLLAPGGRITAGRIIFDGRDITSADRRVMRTIRGRE
MAV_0467|M.avium_104 ESGSGKSSTAAAILGLLPPGGRITAGRIMFDGVDISAADRRALRSMRGRQ
TH_3544|M.thermoresistible__bu ESGCGKSLVAAALCGLLP-PGSRVTGRITIAGADIAHHDEKRWRRLRGRH
Mflv_0116|M.gilvum_PYR-GCK ESGCGKSLVAAALSGLLP-PGSRVHGTVHVGGRQVRCDDERAWRALRGRH
***.*** .* :: .* * : . :: .**.
MSMEG_0640|M.smegmatis_MC2_155 IAMVFQDPMTSLNPVYRVGDQIIEMIRAHR-DVSKAEARDKAVELLRAVG
Mvan_0435|M.vanbaalenii_PYR-1 IAMVFQDPMSSLNPVYRVGDQIVEMIRAHR-DVSKKEARERTVELLTSVG
MLBr_01122|M.leprae_Br4923 IGTVFQDPMSALTPVYTVGDQITEAIKVHQPRVGKKAAHRRAVELLELVG
MAB_0429|M.abscessus_ATCC_1997 VAVIFQEPMTALNPVYTIGWQIAEAVCAHK-KMSRRQARDRAVELLDLVD
Mb3687c|M.bovis_AF2122/97 IGYVPQDPMTNLNPVWKVGFQVTEALRANT---DGRAARRRAVELLAEAG
Rv3663c|M.tuberculosis_H37Rv IGYVPQDPMTNLNPVWKVGFQVTEALRANT---DGRAARRRAVELLAEAG
MMAR_5151|M.marinum_M IGYVPQDPMTNLNPVWKVGFQIREALRANT---DGRDARRRTVELLAQAG
MUL_4237|M.ulcerans_Agy99 IGYVPQDPMTNLNPVWKVGFQIREALRANT---DGRDARRRTVELLAQAG
MAV_0467|M.avium_104 IGYIPQDPMTNLNPVWKVGFQIREALRANT---SDRDTRRRAVQLLEAAG
TH_3544|M.thermoresistible__bu IGLVPQSAATSFTPVRPVGDQLAEVCHRLR-------ADRTPIQLLATVG
Mflv_0116|M.gilvum_PYR-GCK VGSVPQSAATSFTPVRTVGSQLAEICARLR-------SDRTPEHLCAAMA
:. : *.. : :.** :* *: * : . .*
MSMEG_0640|M.smegmatis_MC2_155 IPHPEQRVSDYPHEFSGGMRQRVMIAMALALEPEVLIADEPTTALDVTVQ
Mvan_0435|M.vanbaalenii_PYR-1 IPNPQARVRSYPHEFSGGMRQRVMIAMALALEPAVLIADEPTTALDVTVQ
MLBr_01122|M.leprae_Br4923 ITQPDRRARAFPHELSGGERQRVVIATAIANDPDLLICDEPTTALDVTVQ
MAB_0429|M.abscessus_ATCC_1997 MPEPAKRVKHYPHQLSGGQRQRAMIAQALALDPGLLIADEPTTALDVTVQ
Mb3687c|M.bovis_AF2122/97 LPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPTSALDVTVQ
Rv3663c|M.tuberculosis_H37Rv LPDPAKQAGRYPHQLSGGMCQRALIAIGLAGRPRLLIADEPTSALDVTVQ
MMAR_5151|M.marinum_M MPDPDKHAQRYPHQLSGGMCQRALIAIGLAGRPALLIADEPTSALDVTVQ
MUL_4237|M.ulcerans_Agy99 MPDPDKHAQRYPHQLSGGMCQRALIAIGLAGRPALLIADEPTSALDVTVQ
MAV_0467|M.avium_104 MPDPAKQAARYPHQLSGGMCQRALIAIGLAGRPRLLIADEPTSALDVTVQ
TH_3544|M.thermoresistible__bu LT--ADVAARYPHELSGGMAQRVAIAAALAGRPGLLLADEPTTGLDPDNA
Mflv_0116|M.gilvum_PYR-GCK LP--AGVVDRYPHELSGGMAQRVAIAAALAGRPGLLIADEPTSALDPDNA
:. . :**::*** **. ** .:* * :*:.****:.**
MSMEG_0640|M.smegmatis_MC2_155 AQILRLVDRLNQERELAVVLITHDLG--VVAEVADRVVVMYAGQIVEDGT
Mvan_0435|M.vanbaalenii_PYR-1 AQILRLLADLNRERELAVVLITHDLG--VVAEVADRVVVMYAGQIVEDGT
MLBr_01122|M.leprae_Br4923 AQILEVLKTARDVTGAGVLIITHDLG--VVTEFADQALVMYAGRVVESAQ
MAB_0429|M.abscessus_ATCC_1997 AEILDLMRDLRHRIDAGIILITHDMG--VVADMADRIMVMKDGEVVEQGD
Mb3687c|M.bovis_AF2122/97 RQVLDHLQGLTDELGTALLLITHDLA--LAAQRAEAVVVVRRGVVVESGA
Rv3663c|M.tuberculosis_H37Rv RQVLDHLQGLTDELGTALLLITHDLA--LAAQRAEAVVVVRRGVVVESGA
MMAR_5151|M.marinum_M RQVLDHLQRRTDELGTALLLITHDLA--LAAERAESVLVVHHGVVVESGT
MUL_4237|M.ulcerans_Agy99 RQVLDHLQRRTDEVGTALLLITHDLA--LAAERAESVLVVDHGVVVESGT
MAV_0467|M.avium_104 RQVLDHLQRLTADLGTAVLLITHDLA--LAAERAESVVVVHDGVAVESGA
TH_3544|M.thermoresistible__bu AMVWRLLGEAAAE-GAGVLVITHDLPALMRAQVCAEVALMRAGTVVAQEP
Mflv_0116|M.gilvum_PYR-GCK AVIWRLLGDAASD-GAGVLVITHDMPSLLRAQVCDEVAVMARGTVLSQAP
: : .:::****: : :: . :: * : .
MSMEG_0640|M.smegmatis_MC2_155 LDEIFYDPQHPYTWGLLGSLPRVEDTNQER----------LQQIPGQPPS
Mvan_0435|M.vanbaalenii_PYR-1 VDDIFYSPQHPYTWGLLGSLARLDRPRTER----------LAQIAGAPPS
MLBr_01122|M.leprae_Br4923 VSTLYRERQMPYTVGLLGSVPRLDATQGTR----------LVPIPGAPPS
MAB_0429|M.abscessus_ATCC_1997 AEGIFHRAQQPYTRQLLASVPHLGATLHGR----------DESNP--PPT
Mb3687c|M.bovis_AF2122/97 AQSILQSPQHEYTRRLVAAAPSLTARSRRPPESR----SRATTQAG---D
Rv3663c|M.tuberculosis_H37Rv AQSILQSPQHEYTRRLVAAAPSLTARSRRPPESR----SRATTQAG---D
MMAR_5151|M.marinum_M ASDILRSPQHEYTKRLVAAAPSLTVRDPRRAPARGPVPGGADQPAGGCGD
MUL_4237|M.ulcerans_Agy99 ASDILRSPQHEYTKRLVAAAPSLTVRDPRRAPARGPVPGGADQPAGGCGD
MAV_0467|M.avium_104 AQSILQDPRHEYTRRLVAAAPALTVSGGARTGPR-----QPDRTQPEPAD
TH_3544|M.thermoresistible__bu LDVMSTRT-DGYVGRFFSPAVL----------------------------
Mflv_0116|M.gilvum_PYR-GCK LSDALGSP-DPYTQALLGTVLV----------------------------
. *. :...
MSMEG_0640|M.smegmatis_MC2_155 LLNPPTGCRFAARCA----HAFSKCTQPPPLEDRKGDGHLDRCWLTPEE-
Mvan_0435|M.vanbaalenii_PYR-1 LLDPPSGCRFAPRCA----FQFDRCDQPPPL-DHDGGTHLDRCWLGGDV-
MLBr_01122|M.leprae_Br4923 LAGLQQECPFAPRCP----LVVDECRLREPELVEVRAGHRTACIRTDQVS
MAB_0429|M.abscessus_ATCC_1997 DLALSVEHAVIEYPG----KSGSFRAVDDVSFTIGRGEVVGLVGESGSG-
Mb3687c|M.bovis_AF2122/97 ILVVSELTKIYRESRGAPWRRVESRAVDGVSFRLPRASTLAIVGESGSG-
Rv3663c|M.tuberculosis_H37Rv ILVVSELTKIYRESRGAPWRRVESRAVDGVSFRLPRASTLAIVGESGSG-
MMAR_5151|M.marinum_M ILSVSELTKIYRESRGAPWRRGEFRAVDSVSFRLRRASTLAIVGESGSG-
MUL_4237|M.ulcerans_Agy99 ILSVSELTKIYRESRGAPWRRGEFRAVDSVSFRLRRASTLAIVGESGSG-
MAV_0467|M.avium_104 ILVASDLTKLYREPRATLWRRTEFRAVDAVSFRLHRARTLAIAGESGSG-
TH_3544|M.thermoresistible__bu --------------------------------------------------
Mflv_0116|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_0640|M.smegmatis_MC2_155 ----------KRTLR-----------------------------------
Mvan_0435|M.vanbaalenii_PYR-1 ----------KAEVRP----------------------------------
MLBr_01122|M.leprae_Br4923 GRSAADIYGINTDTRTSATSDSSVVVRVRDLVKTYRLTKGVGLRRAIGEI
MAB_0429|M.abscessus_ATCC_1997 ----------KSTIGRAAVG------------------------------
Mb3687c|M.bovis_AF2122/97 ----------KSTLARMVLG------------------------------
Rv3663c|M.tuberculosis_H37Rv ----------KSTLARMVLG------------------------------
MMAR_5151|M.marinum_M ----------KSTVARMVLG------------------------------
MUL_4237|M.ulcerans_Agy99 ----------KSTVARMVLG------------------------------
MAV_0467|M.avium_104 ----------KSTLALMVLG------------------------------
TH_3544|M.thermoresistible__bu --------------------------------------------------
Mflv_0116|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_0640|M.smegmatis_MC2_155 --------------------------------------------------
Mvan_0435|M.vanbaalenii_PYR-1 --------------------------------------------------
MLBr_01122|M.leprae_Br4923 RAVNGVSFELQQGRTLGIVGESGSGKSTTLHEILRLAVPQSGSIEVLGI-
MAB_0429|M.abscessus_ATCC_1997 -----------------------------------LLRVASGTICVAGQ-
Mb3687c|M.bovis_AF2122/97 -----------------------------------LLQPTSGTVVFDGT-
Rv3663c|M.tuberculosis_H37Rv -----------------------------------LLQPTSGTVVFDGT-
MMAR_5151|M.marinum_M -----------------------------------LLQPTSGTVSFDGAR
MUL_4237|M.ulcerans_Agy99 -----------------------------------LLQPTSGTVSFDGAR
MAV_0467|M.avium_104 -----------------------------------LLPPTSGTVVFDGTR
TH_3544|M.thermoresistible__bu --------------------------------------------------
Mflv_0116|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_0640|M.smegmatis_MC2_155 --------------------------------------------------
Mvan_0435|M.vanbaalenii_PYR-1 --------------------------------------------------
MLBr_01122|M.leprae_Br4923 -DVATLNRASRRSMRRNIQVVFQDPVASLDPRLPVFELIAEPLHAN-GFS
MAB_0429|M.abscessus_ATCC_1997 -DISTANRKQLRDIRSKVGVVFQDPGSSLNPRWPIGQSIAEPLTLHTDMD
Mb3687c|M.bovis_AF2122/97 YDVGALARDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGD
Rv3663c|M.tuberculosis_H37Rv YDVGALARDQVLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRVHHVGD
MMAR_5151|M.marinum_M IQPDKLDRDAQLAFRRRIQPVFQNPYSSLDPMYSVFRAIEEPLRIHRVGD
MUL_4237|M.ulcerans_Agy99 IQPDKLDRDAQLAFRCRIQPVFQNPYSSLDPMYSVFRAIEEPLRIHRVGD
MAV_0467|M.avium_104 IDDT-LSGDQHLAFRRRVQPVFQNPYSSLDPMYSVFRAIEEPLRIHRVGD
TH_3544|M.thermoresistible__bu --------------------------------------------------
Mflv_0116|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_0640|M.smegmatis_MC2_155 --------------------------------------------------
Mvan_0435|M.vanbaalenii_PYR-1 --------------------------------------------------
MLBr_01122|M.leprae_Br4923 KNYTQMRVAELLDIVGLRRDDATRYPTEFSGGQKQRIGIARALALQPKIL
MAB_0429|M.abscessus_ATCC_1997 RTQREGRVKTLLEQVQLPAAMRNRFPHQLSGGQRQRVGIARALALEPTLL
Mb3687c|M.bovis_AF2122/97 RRQRQRAVRELVDQVALPSSILGRRPRELSGGQRQRVAIARALALRPEVL
Rv3663c|M.tuberculosis_H37Rv RRQRQRAVRELVDQVALPSSILGRRPRELSGGQRQRVAIARALALRPEVL
MMAR_5151|M.marinum_M RAQRRQMVAELVDQVALPSSVLGRLPRELSGGQRQRVAIARALALRPDVL
MUL_4237|M.ulcerans_Agy99 RGQRRQMVAELVDQVALPSSVLGRLPRELSGGQRQRVAIARALALRPDVL
MAV_0467|M.avium_104 RRQRAKAVHDLVDQVALPSSVLNRLPRELSGGQRQRVAIARALALRPQVL
TH_3544|M.thermoresistible__bu --------------------------------------------------
Mflv_0116|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_0640|M.smegmatis_MC2_155 --------------------------------------------------
Mvan_0435|M.vanbaalenii_PYR-1 --------------------------------------------------
MLBr_01122|M.leprae_Br4923 AFDEPVSALDVSIQAGIINLLLDLQDRLGLSYLFVSHDLSVIKHLAHQVA
MAB_0429|M.abscessus_ATCC_1997 IADEPTSALDVSVQATVLDLFAELQREHGFACLFISHDLAVVELVASRIA
Mb3687c|M.bovis_AF2122/97 VCDEAVSALDVLVQAQILDLLADLQADLGLTYLFISHDLAVIRQIADDVL
Rv3663c|M.tuberculosis_H37Rv VCDEAVSALDVLVQAQILDLLADLQADLGLTYLFISHDLAVIRQIADDVL
MMAR_5151|M.marinum_M VCDEAVSALDVLVQAQILDLLAELQADLGLAYLFISHDLAVVRQISDDVL
MUL_4237|M.ulcerans_Agy99 VCDEAVSALDVLVQAQILDLLAELQADLGLAYLFISHDLAVVRQISDDVL
MAV_0467|M.avium_104 VCDEAVSALDVLVQAQILELLARLQAELGLAYLFISHDLAVIRQIADDVL
TH_3544|M.thermoresistible__bu --------------------------------------------------
Mflv_0116|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_0640|M.smegmatis_MC2_155 --------------------------------------------------
Mvan_0435|M.vanbaalenii_PYR-1 --------------------------------------------------
MLBr_01122|M.leprae_Br4923 VMLAGTIVEQGDSHDVFRNPQHDYTRRLLGAIPRPEVG------------
MAB_0429|M.abscessus_ATCC_1997 VLNRGRLAEFGSDTQVLTAPKDDYTKRLLAAVPVPDPEQQRIRREERQAL
Mb3687c|M.bovis_AF2122/97 VMRAGRVVEHASTEEVFSRPRHEYTRQLLQAIPGAPSAPRKVGNL-----
Rv3663c|M.tuberculosis_H37Rv VMRAGRVVEHASTEEVFSRPRHEYTRQLLQAIPGAPSAPRKVGNL-----
MMAR_5151|M.marinum_M VMRAGQVVEHAPTEEVFTRPGAQYTQRLLEAIPGGPVAPR----------
MUL_4237|M.ulcerans_Agy99 VMRAGQVVEHAPTEEVFTRPGAQYTQRLLEAIPGGPVAPR----------
MAV_0467|M.avium_104 VMRAGRVVEQAPTEKLFTAPAQDYTRQLLDAIPRPRRGGDRLSSCDG---
TH_3544|M.thermoresistible__bu --------------------------------------------------
Mflv_0116|M.gilvum_PYR-GCK --------------------------------------------------
MSMEG_0640|M.smegmatis_MC2_155 -
Mvan_0435|M.vanbaalenii_PYR-1 -
MLBr_01122|M.leprae_Br4923 -
MAB_0429|M.abscessus_ATCC_1997 R
Mb3687c|M.bovis_AF2122/97 -
Rv3663c|M.tuberculosis_H37Rv -
MMAR_5151|M.marinum_M -
MUL_4237|M.ulcerans_Agy99 -
MAV_0467|M.avium_104 -
TH_3544|M.thermoresistible__bu -
Mflv_0116|M.gilvum_PYR-GCK -