For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_0226 | hypC | - | 100% (90) | hydrogenase assembly chaperone HypC/HupF |
| M. thermoresistible (build 8) | TH_1943 | hypC | 5e-19 | 59.26% (81) | hydrogenase assembly chaperone HypC/HupF |
| M. thermoresistible (build 8) | TH_1947 | hypC | 4e-13 | 45.33% (75) | hydrogenase assembly chaperone HypC/HupF |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_3980 | - | 1e-08 | 32.95% (88) | hydrogenase assembly chaperone hypC/hupF |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_1858 | hypC | 4e-36 | 81.11% (90) | hydrogenase maturation factor, HypC |
| M. avium 104 | - | - | - | - | - |
| M. smegmatis MC2 155 | MSMEG_2703 | hypC | 3e-25 | 62.37% (93) | hydrogenase assembly chaperone HypC/HupF |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_2406 | - | 6e-10 | 35.29% (85) | hydrogenase assembly chaperone hypC/hupF |
CLUSTAL 2.0.9 multiple sequence alignment
TH_0226|M.thermoresistible__bu MCLGIPGRIVEITDAE-NGLAKVDVSGVQRVISVRLLEQ-PPE----PDD
MMAR_1858|M.marinum_M MCLGIPGRIVEITDPE-NYLAKVDVSGVQRTISVRLLDEDTPQ----PDD
MSMEG_2703|M.smegmatis_MC2_155 MCLGIPGQVVDIVDTE-AHLAKVDVNGVRRVISVRLLATDNPEDILRVGD
Mflv_3980|M.gilvum_PYR-GCK MCLAVPGRILSIHERDGTTMSVVDFGGIRKNVCLQYLPDAQVG------Q
Mvan_2406|M.vanbaalenii_PYR-1 MCLAVPGKIVSIDERDGTLMSIVDFGGVEKDVCLQYIPDAEVG------Q
***.:**:::.* : : :: **..*:.: :.:: : :
TH_0226|M.thermoresistible__bu WVLVHVGFAMAKIDETEALLTLAAVQKLGEAYDSELEGLDSSSII-----
MMAR_1858|M.marinum_M WVLVHVGFAMAKIDESEALLTLAAIKQLGEAYTAEMEAFDSSSIV-----
MSMEG_2703|M.smegmatis_MC2_155 WVLVHVGFAMAKIDEREAQLTLDQVQKMGADYTNEIDAFTSSEIA-----
Mflv_3980|M.gilvum_PYR-GCK YVVVHVGFAIQRLDEESARRTLAEFAHLGVLDEEFADGFASAARQARLAN
Mvan_2406|M.vanbaalenii_PYR-1 YVVVHVGFAIQRLDEESAIRTLAEFEHLGVLKEEFADGFELAARQAGLAN
:*:******: ::** .* ** . ::* :.: :
TH_0226|M.thermoresistible__bu ------------
MMAR_1858|M.marinum_M ------------
MSMEG_2703|M.smegmatis_MC2_155 ------------
Mflv_3980|M.gilvum_PYR-GCK PDTGARSESIP-
Mvan_2406|M.vanbaalenii_PYR-1 PNTNG----VPR