For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_1947 | hypC | - | 100% (87) | hydrogenase assembly chaperone HypC/HupF |
| M. thermoresistible (build 8) | TH_0226 | hypC | 4e-13 | 45.33% (75) | hydrogenase assembly chaperone HypC/HupF |
| M. thermoresistible (build 8) | TH_1943 | hypC | 3e-10 | 46.43% (56) | hydrogenase assembly chaperone HypC/HupF |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_3980 | - | 9e-10 | 37.33% (75) | hydrogenase assembly chaperone hypC/hupF |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_1863 | - | 2e-27 | 68.00% (75) | HupF/HypC family protein |
| M. avium 104 | - | - | - | - | - |
| M. smegmatis MC2 155 | MSMEG_2712 | hypC | 2e-30 | 67.44% (86) | hydrogenase assembly chaperone HypC/HupF |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_2408 | - | 1e-28 | 67.44% (86) | hydrogenase assembly chaperone hypC/hupF |
CLUSTAL 2.0.9 multiple sequence alignment
MSMEG_2712|M.smegmatis_MC2_155 MCLGIPGRVVRMLDGYGGQLALVDVAGEHRKVNVGMLPEETFAEGDWVVI
Mvan_2408|M.vanbaalenii_PYR-1 MCLGIPGQVVGMLDGYGDQLALVDVAGEHRRVNVGMLPEERFAPGDWVII
MMAR_1863|M.marinum_M MCLGIPGQVIRILDGYEGQLALVEVTGEARKVNIGMLPDETFSPGDWVII
TH_1947|M.thermoresistible__bu VCLGIPGRVVRMLEGYGGQLALVDVAGEHRKVNVGMLADQAVGPGDWVII
Mflv_3980|M.gilvum_PYR-GCK MCLAVPGRILSIHERDGTTMSVVDFGGIRKNVCLQYLPDAQV--GQYVVV
:**.:**::: : : :::*:. * :.* : *.: . *::*::
MSMEG_2712|M.smegmatis_MC2_155 HMGFVVEKTDAAGAQAALEGLELMG-----------RGRPES-LGGAP--
Mvan_2408|M.vanbaalenii_PYR-1 HMGFVVEKTDKAGADAAWAGLELMG-----------RGPGD---GDPP--
MMAR_1863|M.marinum_M HMGFAIEKTDRAGAEQAMAGLELMG-----------RGRTDTDFTDGG--
TH_1947|M.thermoresistible__bu HMGFALERTDEQGAAAALAGLRLLG-----------NNSNPAAGADP---
Mflv_3980|M.gilvum_PYR-GCK HVGFAIQRLDEESARRTLAEFAHLGVLDEEFADGFASAARQARLANPDTG
*:**.::: * .* : : :* .
MSMEG_2712|M.smegmatis_MC2_155 -------
Mvan_2408|M.vanbaalenii_PYR-1 -------
MMAR_1863|M.marinum_M -------
TH_1947|M.thermoresistible__bu -------
Mflv_3980|M.gilvum_PYR-GCK ARSESIP