For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
VFSTHLSTQLRKALPVQVSHKFAASSAVFDDDHLVSCAGLVPVMTLAAQTGLAQLLAAKVRITEPRIKSG SANPAPKLTTVVAGMCAGADCIDDLDLVRSGGMKTLFDGVYAPSTIGTLLREFTFGHARQLESVLREHLA GLCERVQLLPGSDERAFVDIDSLLRPVYGRAKQGASYGHTKIAGKQILRKGLSPLVTTISTETAAPVITG ARLRAGKTNSGKGAARMIAQAVATARASGVTGQILVRGDSAYGNSAVVAACRRAGARFSLVLTKTAAVAA AIESISESAWVPVKYPGAVRDPDTGAWISDAEVAETTYTAFSSTKTPVTARLIVRRVKDARFLDALFPVW RYHPFFTDSDEPVDASDITHRRHAIIETVFADLIDGPLAHMPSGRFGANSAWILCAAIAYNLLRAVGVLA GGVHAVARGATLRRKFVNIPARLARPQRRAILHLPTHWPWAQQWLTLWRNTIGHSPPTAATH
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. vanbaalenii PYR-1 | Mvan_5550 | - | - | 100% (482) | transposase, IS4 family protein |
| M. vanbaalenii PYR-1 | Mvan_3553 | - | 0.0 | 100.00% (482) | transposase, IS4 family protein |
| M. vanbaalenii PYR-1 | Mvan_3030 | - | 0.0 | 100.00% (482) | transposase, IS4 family protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_4617 | - | 1e-138 | 81.37% (306) | TnpC protein |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_3317 | - | 1e-19 | 26.33% (471) | transposase for ISMyma07 |
| M. avium 104 | MAV_1481 | - | 0.0 | 81.86% (397) | TnpC protein |
| M. smegmatis MC2 155 | MSMEG_6654 | - | 0.0 | 89.08% (467) | TnpC protein |
| M. thermoresistible (build 8) | TH_0489 | - | 0.0 | 75.33% (450) | TnpC protein |
| M. ulcerans Agy99 | - | - | - | - | - |
CLUSTAL 2.0.9 multiple sequence alignment
Mvan_5550|M.vanbaalenii_PYR-1 MFSTHLSTQLRKALPVQVSHKFAASSAVFDDDHLVSCAGLVPVMTLAAQT
MSMEG_6654|M.smegmatis_MC2_155 ---------------MKVSHNFMAASAVFDDEHLVSCAGLVPVMTLASQT
MAV_1481|M.avium_104 --------------------------------------------------
TH_0489|M.thermoresistible__bu ---------------------------VFDDDNLVSCAGLVPVMGQAEQT
Mflv_4617|M.gilvum_PYR-GCK MFSTHLSAQLGKALPVQVSHRFAASSAVFDDERLVSCAGLVPVMALAEQT
MMAR_3317|M.marinum_M ---------------MESSAAVSRVKVSAGGRGVVSHAGMGLLRELADLT
Mvan_5550|M.vanbaalenii_PYR-1 GLAQLLAAKVRITEPRIKSGSANPAPKLTTVVAGMCAGADCIDDLDLVRS
MSMEG_6654|M.smegmatis_MC2_155 GLSDLIADKVEIVEPRIKSGSANPSPKLTTVIAGMCAGADSIDDLDLVRS
MAV_1481|M.avium_104 ----------------------------------MCVGADSIDDLDLVRA
TH_0489|M.thermoresistible__bu GLSDLLAQHVHITETRIKSGAANLAPKLATVIAAMCAGADCIDDVDVLRS
Mflv_4617|M.gilvum_PYR-GCK GLSSSLADKVRFSCERVKSGAANPSPKLTTLIAGMCTGADSIDDLDVVRS
MMAR_3317|M.marinum_M GLSAQVTAAP--ADTYRGPWVYAPGDIFADLAAAVADGADCIDGVGQL-C
:. ***.**.:. : .
Mvan_5550|M.vanbaalenii_PYR-1 GGMKTLFDGVYAPSTIGTLLREFTFGHARQLESVLREHLAGLCERVQLLP
MSMEG_6654|M.smegmatis_MC2_155 GGMKALFGGVYAPSTIGTLLREFTFGHARQLEAVLREHLGGLCERVALLP
MAV_1481|M.avium_104 GGMKSLFGGVYAASTVGTLLREFTFGHARQLESVLRHHLSHLCQRVDLLP
TH_0489|M.thermoresistible__bu GGMKTLFDNVYAPSTIGTLLREFTFGHNRQLESVLRHHLSALCGHVDLLP
Mflv_4617|M.gilvum_PYR-GCK GGMKTLFGEVYAPSTIGTLLREFTFGHARQLESVLSEHVGALCERVDLLP
MMAR_3317|M.marinum_M GDREHVFGAKASTTTMWRLVDQRIDAAHLPGIHAARAAARAAAWAAGAAP
*. : :*. :.:*: *: : . . . . *
Mvan_5550|M.vanbaalenii_PYR-1 GSDERAFVDIDSLLRPVYGRAKQGASYGHTKIAGKQILRKGLSPLVTTIS
MSMEG_6654|M.smegmatis_MC2_155 GADTQAFVDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLITTIS
MAV_1481|M.avium_104 GSDKGAFIDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLVTTIS
TH_0489|M.thermoresistible__bu GAAQRVFVDIDSLLGPVYGHAKQGASYGHTKIAGKQVLRKGLSPLATTIS
Mflv_4617|M.gilvum_PYR-GCK GADGRVFIDIDSLLRPVYGQAKQGASYGHTKIAGKQILRKGLSPLVTTIS
MMAR_3317|M.marinum_M APGEWLHIDIDATLVIDHSDNKELATPTWKKSFGVHPLLAFLDRPEIAGG
.. .:***: * :. *: *: .* * : * *. : .
Mvan_5550|M.vanbaalenii_PYR-1 TETAAPVITGARLRAGKTNSGKGAARMIAQAVATARASGVTG------QI
MSMEG_6654|M.smegmatis_MC2_155 TTTGAPMITGARLRAGKTNSGKGAARMIAQAVTTARAAGVNG------QI
MAV_1481|M.avium_104 TTGAAPAITGMRLRAGKANSGKGAGRMIAQAIGTARAAGVRG------QI
TH_0489|M.thermoresistible__bu TDTAAPVIAGMRLQAGKTGSGKGAGRMIAQAIVTARAAGASG------QI
Mflv_4617|M.gilvum_PYR-GCK TEHCAPVITGARLRAGKTNSGKGAARMIAQAVATARGAGVTG------RI
MMAR_3317|M.marinum_M EALAGLLHTGRAGSNTAADHITVLDQALASLPPAWRPDPGRGGDPDAPKV
. :* :. . : :*. : * * ::
Mvan_5550|M.vanbaalenii_PYR-1 LVRGDSAYGNSAVVAACRRAGARFSLVLTKTAAVAAAIESISE-SAWVP-
MSMEG_6654|M.smegmatis_MC2_155 LVRGDSAYGNSTVVNACRRAGAHFSLVLTKTRAVAAAIEAISD-NAWTP-
MAV_1481|M.avium_104 LVRGDSAYGTRAVVGACRSHGARFSLVMTRNTAIDRAINSIDE-SAWTP-
TH_0489|M.thermoresistible__bu LVRGDSVYGRRAVVKACRRAGAQFSLVWTKNTAVRTAIAAIDE-DAWIP-
Mflv_4617|M.gilvum_PYR-GCK LVRGDSAYGNSSVVTACRRAGARFSLVLTKTAAVVAAIADIND-TAWIP-
MMAR_3317|M.marinum_M LVRCDSAGSTHAFADACRAAGVGFSFGYPVDWRVQDAVDTLTLGDAWYPG
*** **. . :.. *** *. **: . : *: : ** *
Mvan_5550|M.vanbaalenii_PYR-1 VKYPGAVRDPDTGAWISDAE--VAETTYTAFSSTKTPVTARLIVRRVKDA
MSMEG_6654|M.smegmatis_MC2_155 VNYPGAVRDPDTGAWISDAE--VAETTYTAFSSTNTPVTARLIVRRVKDA
MAV_1481|M.avium_104 VRYPGAVRDPDTGDWISDAE--VAEIGYTAFASTKDRFTARLVVRRVKDA
TH_0489|M.thermoresistible__bu VRYPGAVQDPDSGKWISDAE--VAEIGYTAFASTKDAITARLIVRRVKDA
Mflv_4617|M.gilvum_PYR-GCK VCYPAAIPTPVPG-------------------------------------
MMAR_3317|M.marinum_M IDTDGGIRD---GAWVAEATGLVNLSAWPAGTRLILRKERPHPGAQLRFT
: ..: *
Mvan_5550|M.vanbaalenii_PYR-1 RFLDALFPVWRYHPFFTDSDEPVDASDITHRRHAIIETVFADLIDGPLAH
MSMEG_6654|M.smegmatis_MC2_155 RYLDALFPVWRYHPFFTDSDEPVDAADITHRRHAIIETVFADLIDGPLAH
MAV_1481|M.avium_104 RFRDALFPVWRYHPFFTNTDLPTAEADITHRQHAIIETVFADLIDGPLAH
TH_0489|M.thermoresistible__bu RHRDALFPVWRCHPFLTNSDEPTADADITNRHRAVVETTFADLIDGPLAR
Mflv_4617|M.gilvum_PYR-GCK ---------------------------------------------SPMPK
MMAR_3317|M.marinum_M DADGMRVTAFITDTGPAAVPGQVAGLELRHRQHARVEDRIRELKSTGLRN
: .
Mvan_5550|M.vanbaalenii_PYR-1 MPSGRFGANSAW---ILCAAIAYNLLRAVGVLAGGVHAVARGATLRRKFV
MSMEG_6654|M.smegmatis_MC2_155 MPSGRFGANSAW---ILCAAIAHNLLRAAGVLAGGAHALARGATLRRKIV
MAV_1481|M.avium_104 MPSGQFGANSAW---VLCAAIAHNLLRAAGVLAGGAHAVARGATLRRKIV
TH_0489|M.thermoresistible__bu MPSGHFGANSAW---ILCAGIAHNLLRGAATLAGEPHIVARGA-MRRKIV
Mflv_4617|M.gilvum_PYR-GCK SP------------------------------------------------
MMAR_3317|M.marinum_M LPCHAFSANAAWQEIILAAADLITWTRLIGFTTQPELARVEITTFRYRVL
*
Mvan_5550|M.vanbaalenii_PYR-1 NIPARLARPQRRAILHLPTHWPWAQQWLTLWRNTIGHSPPTAATH-
MSMEG_6654|M.smegmatis_MC2_155 NIPARLARPQRRPILHLPSHWPWAQQWLTLWRNTIGYSPPTAATH-
MAV_1481|M.avium_104 NIPARLACPQRRPILHLPTHWPWADHWITLWCNTIGHSPPTTATI-
TH_0489|M.thermoresistible__bu NIPARLARPQRRPVLHLPSHWPWADAWLRLWHNLFRERPPPQTVPA
Mflv_4617|M.gilvum_PYR-GCK KPPAPLSVPRRLRSRHG-----------------------------
MMAR_3317|M.marinum_M HVAARITRGARQVRLCIDATWRWAAMIATAWQAIRTAFG-------
: .* :: *