For questions or suggestions e-mail us at: ioerger@cs.tamu.edu
aa seq not available
Operon Prediction Model: Genebank
Paralogs
| species | id | gene | e-value | identity (len) | annotation |
| M. thermoresistible (build 8) | TH_0489 | - | - | 100% (456) | TnpC protein |
| M. thermoresistible (build 8) | TH_1997 | - | 1e-09 | 23.87% (243) | ISMsm3, transposase |
| M. thermoresistible (build 8) | TH_4295 | - | 4e-09 | 23.91% (414) | PUTATIVE transposase, IS4 family protein |
Closest Orthologs (e-value cutoff: 1e-4)
| species | id | gene | e-value | identity (len) | annotation |
| M. bovis AF2122 / 97 | - | - | - | - | - |
| M. gilvum PYR-GCK | Mflv_4617 | - | 1e-110 | 73.02% (278) | TnpC protein |
| M. tuberculosis H37Rv | - | - | - | - | - |
| M. leprae Br4923 | - | - | - | - | - |
| M. abscessus ATCC 19977 | - | - | - | - | - |
| M. marinum M | MMAR_3317 | - | 4e-14 | 25.70% (467) | transposase for ISMyma07 |
| M. avium 104 | MAV_1481 | - | 1e-176 | 76.84% (393) | TnpC protein |
| M. smegmatis MC2 155 | MSMEG_1591 | - | 0.0 | 75.33% (450) | TnpC protein |
| M. ulcerans Agy99 | - | - | - | - | - |
| M. vanbaalenii PYR-1 | Mvan_5550 | - | 0.0 | 75.33% (450) | transposase, IS4 family protein |
CLUSTAL 2.0.9 multiple sequence alignment
MAV_1481|M.avium_104 --------------------------------------------------
MSMEG_1591|M.smegmatis_MC2_155 ---------------MQVSHRFAVSSAVFDDAHLVSCAGLVPVMTLAAQT
TH_0489|M.thermoresistible__bu ---------------------------VFDDDNLVSCAGLVPVMGQAEQT
Mvan_5550|M.vanbaalenii_PYR-1 MFSTHLSTQLRKALPVQVSHKFAASSAVFDDDHLVSCAGLVPVMTLAAQT
Mflv_4617|M.gilvum_PYR-GCK MFSTHLSAQLGKALPVQVSHRFAASSAVFDDERLVSCAGLVPVMALAEQT
MMAR_3317|M.marinum_M ---------------MESSAAVSRVKVSAGGRGVVSHAGMGLLRELADLT
MAV_1481|M.avium_104 ----------------------------------MCVGADSIDDLDLVRA
MSMEG_1591|M.smegmatis_MC2_155 GLPKLLADKISIPAPKIKSGSANPSPKLTTVIAGMCVGADSIDDLDLVRG
TH_0489|M.thermoresistible__bu GLSDLLAQHVHITETRIKSGAANLAPKLATVIAAMCAGADCIDDVDVLRS
Mvan_5550|M.vanbaalenii_PYR-1 GLAQLLAAKVRITEPRIKSGSANPAPKLTTVVAGMCAGADCIDDLDLVRS
Mflv_4617|M.gilvum_PYR-GCK GLSSSLADKVRFSCERVKSGAANPSPKLTTLIAGMCTGADSIDDLDVVRS
MMAR_3317|M.marinum_M GLSAQVTAAP--ADTYRGPWVYAPGDIFADLAAAVADGADCIDGVGQL-C
:. ***.**.:. :
MAV_1481|M.avium_104 GGMKSLFGGVYAASTVGTLLREFTFGHARQLESVLRHHLSHLCQRVDLLP
MSMEG_1591|M.smegmatis_MC2_155 GGMKTLFGGVYAPSTVGTLLREFTFGHARQLESVLRHHLAALCARVDLLP
TH_0489|M.thermoresistible__bu GGMKTLFDNVYAPSTIGTLLREFTFGHNRQLESVLRHHLSALCGHVDLLP
Mvan_5550|M.vanbaalenii_PYR-1 GGMKTLFDGVYAPSTIGTLLREFTFGHARQLESVLREHLAGLCERVQLLP
Mflv_4617|M.gilvum_PYR-GCK GGMKTLFGEVYAPSTIGTLLREFTFGHARQLESVLSEHVGALCERVDLLP
MMAR_3317|M.marinum_M GDREHVFGAKASTTTMWRLVDQRIDAAHLPGIHAARAAARAAAWAAGAAP
*. : :*. :.:*: *: : . . . . *
MAV_1481|M.avium_104 GSDKGAFIDIDSLLRPVYGHAKQGASYGHTKIAGKQILRKGLSPLVTTIS
MSMEG_1591|M.smegmatis_MC2_155 GSDTGAFIDIDSLLRPVYGHAKQGASYGHTKIAGKQVLRKGLSPLATTIS
TH_0489|M.thermoresistible__bu GAAQRVFVDIDSLLGPVYGHAKQGASYGHTKIAGKQVLRKGLSPLATTIS
Mvan_5550|M.vanbaalenii_PYR-1 GSDERAFVDIDSLLRPVYGRAKQGASYGHTKIAGKQILRKGLSPLVTTIS
Mflv_4617|M.gilvum_PYR-GCK GADGRVFIDIDSLLRPVYGQAKQGASYGHTKIAGKQILRKGLSPLVTTIS
MMAR_3317|M.marinum_M APGEWLHIDIDATLVIDHSDNKELATPTWKKSFGVHPLLAFLDRPEIAGG
.. .:***: * :. *: *: .* * : * *. : .
MAV_1481|M.avium_104 TTGAAPAITGMRLRAGKANSGKGAGRMIAQAIGTARAAGVRG------QI
MSMEG_1591|M.smegmatis_MC2_155 TPGAAPVIAGMRLRAGKTSSGKGAGRMVAQAIATARAAGVRG------QL
TH_0489|M.thermoresistible__bu TDTAAPVIAGMRLQAGKTGSGKGAGRMIAQAIVTARAAGASG------QI
Mvan_5550|M.vanbaalenii_PYR-1 TETAAPVITGARLRAGKTNSGKGAARMIAQAVATARASGVTG------QI
Mflv_4617|M.gilvum_PYR-GCK TEHCAPVITGARLRAGKTNSGKGAARMIAQAVATARGAGVTG------RI
MMAR_3317|M.marinum_M EALAGLLHTGRAGSNTAADHITVLDQALASLPPAWRPDPGRGGDPDAPKV
.. :* :. . : :*. : * * ::
MAV_1481|M.avium_104 LVRGDSAYGTRAVVGACRSHGARFSLVMTRNTAIDRAINSIDE-SAWTP-
MSMEG_1591|M.smegmatis_MC2_155 LVRGDSSYGTRSVVGACRAHNAHFSVVMTRNTAVDRAISSIDE-QAWEP-
TH_0489|M.thermoresistible__bu LVRGDSVYGRRAVVKACRRAGAQFSLVWTKNTAVRTAIAAIDE-DAWIP-
Mvan_5550|M.vanbaalenii_PYR-1 LVRGDSAYGNSAVVAACRRAGARFSLVLTKTAAVAAAIESISE-SAWVP-
Mflv_4617|M.gilvum_PYR-GCK LVRGDSAYGNSSVVTACRRAGARFSLVLTKTAAVVAAIADIND-TAWIP-
MMAR_3317|M.marinum_M LVRCDSAGSTHAFADACRAAGVGFSFGYPVDWRVQDAVDTLTLGDAWYPG
*** ** . :.. *** .. **. . : *: : ** *
MAV_1481|M.avium_104 VRYPGAVRDPDTGDWISDAE--VAEIGYTAFASTKDRFTARLVVRRVKDA
MSMEG_1591|M.smegmatis_MC2_155 VNYPGAVRDPDTGDWISDAE--VAEVSYTAFASTKDRFTARLVVRRVKDA
TH_0489|M.thermoresistible__bu VRYPGAVQDPDSGKWISDAE--VAEIGYTAFASTKDAITARLIVRRVKDA
Mvan_5550|M.vanbaalenii_PYR-1 VKYPGAVRDPDTGAWISDAE--VAETTYTAFSSTKTPVTARLIVRRVKDA
Mflv_4617|M.gilvum_PYR-GCK VCYPAAIPTPVPG-------------------------------------
MMAR_3317|M.marinum_M IDTDGGIRD---GAWVAEATGLVNLSAWPAGTRLILRKERPHPGAQLRFT
: ..: *
MAV_1481|M.avium_104 RFRDALFPVWRYHPFFTNTDLPTAEADITHRQHAIIETVFADLIDGPLAH
MSMEG_1591|M.smegmatis_MC2_155 RFRDALFPVWRYHPFFTNTDLPTAEADITHRQHAIIETVFADLIDGPLAH
TH_0489|M.thermoresistible__bu RHRDALFPVWRCHPFLTNSDEPTADADITNRHRAVVETTFADLIDGPLAR
Mvan_5550|M.vanbaalenii_PYR-1 RFLDALFPVWRYHPFFTDSDEPVDASDITHRRHAIIETVFADLIDGPLAH
Mflv_4617|M.gilvum_PYR-GCK ---------------------------------------------SPMPK
MMAR_3317|M.marinum_M DADGMRVTAFITDTGPAAVPGQVAGLELRHRQHARVEDRIRELKSTGLRN
: .
MAV_1481|M.avium_104 MPSGQFGANSAW---VLCAAIAHNLLRAAGVLAGGAHAVARGATLRRKIV
MSMEG_1591|M.smegmatis_MC2_155 MPSGQFGANSAW---VLCAAIAHNLLRAAGVLAGGAHVVARGATLRRKIV
TH_0489|M.thermoresistible__bu MPSGHFGANSAW---ILCAGIAHNLLRGAATLAGEPHIVARGA-MRRKIV
Mvan_5550|M.vanbaalenii_PYR-1 MPSGRFGANSAW---ILCAAIAYNLLRAVGVLAGGVHAVARGATLRRKFV
Mflv_4617|M.gilvum_PYR-GCK SP------------------------------------------------
MMAR_3317|M.marinum_M LPCHAFSANAAWQEIILAAADLITWTRLIGFTTQPELARVEITTFRYRVL
*
MAV_1481|M.avium_104 NIPARLACPQRRPILHLPTHWPWADHWITLWCNTIGHSPPTTATI-
MSMEG_1591|M.smegmatis_MC2_155 NIPARLARPQRRPILHLPEHWPWTEHWLTLWRNTIGYSPPLPATT-
TH_0489|M.thermoresistible__bu NIPARLARPQRRPVLHLPSHWPWADAWLRLWHNLFRERPPPQTVPA
Mvan_5550|M.vanbaalenii_PYR-1 NIPARLARPQRRAILHLPTHWPWAQQWLTLWRNTIGHSPPTAATH-
Mflv_4617|M.gilvum_PYR-GCK KPPAPLSVPRRLRSRHG-----------------------------
MMAR_3317|M.marinum_M HVAARITRGARQVRLCIDATWRWAAMIATAWQAIRTAFG-------
: .* :: *